Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G41600 Arabidopsis lyrata HOM05D003399 ORTHO05D003393 4.4e-25 117.1 56 100.0
BcaC05g26811 Brassica carinata HOM05D003399 ORTHO05D003393 5.0e-21 103.6 54 88.9
A09p38010 Brassica napus HOM05D003399 ORTHO05D003393 3.3e-20 100.9 54 85.2
BraA09t39311Z Brassica rapa HOM05D003399 ORTHO05D003393 3.3e-20 100.9 54 85.2
Sp1g24260 Schrenkiella parvula HOM05D003399 ORTHO05D003393 5.6e-20 100.1 59 84.7
A08p25910 Brassica napus HOM05D003399 ORTHO05D003393 7.3e-20 99.8 59 84.7
BraA08t34543Z Brassica rapa HOM05D003399 ORTHO05D003393 7.3e-20 99.8 59 84.7
C07p17320 Brassica napus HOM05D003399 ORTHO05D003393 1.2e-19 99.0 59 81.4
BolC7t42236H Brassica oleracea HOM05D003399 ORTHO05D003393 1.2e-19 99.0 59 81.4
BcaC05g26625 Brassica carinata HOM05D003399 ORTHO05D003393 1.6e-19 98.6 54 83.3
C03p74730 Brassica napus HOM05D003399 ORTHO05D003393 1.6e-19 98.6 59 83.1
C05p26750 Brassica napus HOM05D003399 ORTHO05D003393 1.6e-19 98.6 54 83.3
Carub.0001s2651 Capsella rubella HOM05D003399 ORTHO05D003393 2.8e-19 97.8 60 80.0
Thhalv10009364m.g Eutrema salsugineum HOM05D003399 ORTHO05D003393 4.4e-17 90.5 60 76.7
Potri.001G062700 Populus trichocarpa HOM05D003399 ORTHO05D003393 6.0e-14 80.1 56 66.1
CARHR200200 Cardamine hirsuta HOM05D003399 ORTHO05D003393 1.0e-13 79.3 57 66.7
Potri.003G164800 Populus trichocarpa HOM05D003399 ORTHO05D003393 1.7e-13 78.6 56 64.3
TPR.G2909 Trifolium pratense HOM05D003399 ORTHO05D003393 3.0e-13 77.8 54 64.8
QL03p050027 Quercus lobata HOM05D003399 ORTHO05D003393 3.9e-13 77.4 55 65.5
BraA02t05155Z Brassica rapa HOM05D003399 ORTHO05D003393 5.0e-13 77.0 57 63.2
Carub.0006s1142 Capsella rubella HOM05D003399 ORTHO05D003393 5.0e-13 77.0 59 62.7
Nn4g22186 Nelumbo nucifera HOM05D003399 ORTHO05D003393 5.0e-13 77.0 52 73.1
Sed0004087 Sechium edule HOM05D003399 ORTHO05D003393 5.0e-13 77.0 53 64.2
TWI36G0503 Tripterygium wilfordii HOM05D003399 ORTHO05D003393 5.0e-13 77.0 56 66.1
AT5G13250 Arabidopsis thaliana HOM05D003399 ORTHO05D003393 8.6e-13 76.3 57 63.2
Atru.chr11.2413 Acer truncatum HOM05D003399 ORTHO05D003393 1.5e-12 75.5 56 62.5
A10p24960 Brassica napus HOM05D003399 ORTHO05D003393 1.5e-12 75.5 58 62.1
C09p63830 Brassica napus HOM05D003399 ORTHO05D003393 1.5e-12 75.5 58 62.1
BolC9t59223H Brassica oleracea HOM05D003399 ORTHO05D003393 1.5e-12 75.5 58 62.1
BraA10t44558Z Brassica rapa HOM05D003399 ORTHO05D003393 1.5e-12 75.5 58 62.1
Psat3g189760 Pisum sativum HOM05D003399 ORTHO05D003393 1.5e-12 75.5 54 63.0
THA.LOC104814204 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 1.5e-12 75.5 62 62.9
TAR374G0208 Trochodendron aralioides HOM05D003399 ORTHO05D003393 1.5e-12 75.5 56 67.9
Dinv12132 Davidia involucrata HOM05D003399 ORTHO05D003393 1.9e-12 75.1 56 62.5
Glyma.18G282500 Glycine max HOM05D003399 ORTHO05D003393 1.9e-12 75.1 55 65.5
Lj1g0015103 Lotus japonicus HOM05D003399 ORTHO05D003393 1.9e-12 75.1 53 66.0
Manes.08G102600 Manihot esculenta HOM05D003399 ORTHO05D003393 1.9e-12 75.1 54 68.5
Sp6g30740 Schrenkiella parvula HOM05D003399 ORTHO05D003393 1.9e-12 75.1 57 59.6
arahy.Tifrunner.gnm1.ann1.FX1Z4A Arachis hypogaea HOM05D003399 ORTHO05D003393 2.5e-12 74.7 57 61.4
arahy.Tifrunner.gnm1.ann1.ULYV8E Arachis hypogaea HOM05D003399 ORTHO05D003393 2.5e-12 74.7 57 61.4
Duzib248G1620 Durio zibethinus HOM05D003399 ORTHO05D003393 3.3e-12 74.3 56 64.3
Phvul.008G018800 Phaseolus vulgaris HOM05D003399 ORTHO05D003393 3.3e-12 74.3 55 67.3
ClCG07G011820 Citrullus lanatus HOM05D003399 ORTHO05D003393 4.3e-12 73.9 54 66.7
TAR622G1322 Trochodendron aralioides HOM05D003399 ORTHO05D003393 4.3e-12 73.9 56 66.1
Lalb_Chr10g0092161 Lupinus albus HOM05D003399 ORTHO05D003393 5.6e-12 73.6 55 65.5
Nn3g16314 Nelumbo nucifera HOM05D003399 ORTHO05D003393 5.6e-12 73.6 56 66.1
Duzib052G0315 Durio zibethinus HOM05D003399 ORTHO05D003393 9.5e-12 72.8 56 60.7
THA.LOC104807363 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 1.2e-11 72.4 59 57.6
CARHR027540 Cardamine hirsuta HOM05D003399 ORTHO05D003393 1.6e-11 72.0 39 87.2
TWI75G1177 Tripterygium wilfordii HOM05D003399 ORTHO05D003393 1.6e-11 72.0 56 60.7
Aqoxy3G01823 Aquilegia oxysepala HOM05D003399 ORTHO05D003393 2.1e-11 71.6 56 62.5
C03p06820 Brassica napus HOM05D003399 ORTHO05D003393 2.1e-11 71.6 58 58.6
BolC3t13193H Brassica oleracea HOM05D003399 ORTHO05D003393 2.1e-11 71.6 58 58.6
MBI07_g40352_MAGBIO Magnolia biondii HOM05D003399 ORTHO05D003393 2.1e-11 71.6 56 60.7
MD13G1127900 Malus domestica HOM05D003399 ORTHO05D003393 2.1e-11 71.6 54 63.0
Sabra03G0119900 Salix brachista HOM05D003399 ORTHO05D003393 2.1e-11 71.6 56 64.3
Actinidia22126 Actinidia chinensis HOM05D003399 ORTHO05D003393 2.8e-11 71.2 58 63.8
MD16G1128300 Malus domestica HOM05D003399 ORTHO05D003393 3.6e-11 70.9 54 63.0
TWI18G1150 Tripterygium wilfordii HOM05D003399 ORTHO05D003393 3.6e-11 70.9 56 60.7
GSVIVG01000970001 Vitis vinifera HOM05D003399 ORTHO05D003393 3.6e-11 70.9 57 59.6
A03p05900 Brassica napus HOM05D003399 ORTHO05D003393 4.7e-11 70.5 58 56.9
BraA03t09928Z Brassica rapa HOM05D003399 ORTHO05D003393 4.7e-11 70.5 58 56.9
MELO3C017803.2 Cucumis melo HOM05D003399 ORTHO05D003393 4.7e-11 70.5 53 64.2
Glyma.08G258100 Glycine max HOM05D003399 ORTHO05D003393 4.7e-11 70.5 55 63.6
THA.LOC104820532 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 4.7e-11 70.5 59 64.4
Oeu055475.1 Olea europaea HOM05D003399 ORTHO05D003393 6.2e-11 70.1 53 60.4
PSO017G5218 Papaver somniferum HOM05D003399 ORTHO05D003393 6.2e-11 70.1 58 60.3
PSO478G0797 Papaver somniferum HOM05D003399 ORTHO05D003393 6.2e-11 70.1 58 60.3
Migut.K01039 Erythranthe guttata HOM05D003399 ORTHO05D003393 8.0e-11 69.7 55 52.7
MSTRG.465 Avicennia marina HOM05D003399 ORTHO05D003393 1.1e-10 69.3 54 59.3
Gohir.D02G174700 Gossypium hirsutum HOM05D003399 ORTHO05D003393 1.1e-10 69.3 54 61.1
Gorai.005G196300 Gossypium raimondii HOM05D003399 ORTHO05D003393 1.1e-10 69.3 54 61.1
Prupe.1G218100 Prunus persica HOM05D003399 ORTHO05D003393 1.1e-10 69.3 57 63.2
C02p06020 Brassica napus HOM05D003399 ORTHO05D003393 1.4e-10 68.9 56 58.9
BolC2t06544H Brassica oleracea HOM05D003399 ORTHO05D003393 1.4e-10 68.9 56 58.9
Oeu003275.1 Olea europaea HOM05D003399 ORTHO05D003393 1.4e-10 68.9 53 60.4
SalBow2G2541 Salvia bowleyana HOM05D003399 ORTHO05D003393 1.4e-10 68.9 54 61.1
SalBow7G1980 Salvia bowleyana HOM05D003399 ORTHO05D003393 1.4e-10 68.9 54 61.1
Sopen01g005220 Solanum pennellii HOM05D003399 ORTHO05D003393 1.8e-10 68.6 55 52.7
Eucgr.G01956 Eucalyptus grandis HOM05D003399 ORTHO05D003393 2.3e-10 68.2 55 54.5
FvH4_4g22950 Fragaria vesca HOM05D003399 ORTHO05D003393 3.1e-10 67.8 65 52.3
Actinidia34007 Actinidia chinensis HOM05D003399 ORTHO05D003393 4.0e-10 67.4 56 58.9
EL10Ac6g13590 Beta vulgaris HOM05D003399 ORTHO05D003393 4.0e-10 67.4 54 59.3
Gohir.A03G151600 Gossypium hirsutum HOM05D003399 ORTHO05D003393 4.0e-10 67.4 54 59.3
CANSAT01G0203 Cannabis sativa HOM05D003399 ORTHO05D003393 5.2e-10 67.0 57 59.6
Lalb_Chr04g0258081 Lupinus albus HOM05D003399 ORTHO05D003393 5.2e-10 67.0 54 61.1
TAR629G1336 Trochodendron aralioides HOM05D003399 ORTHO05D003393 5.2e-10 67.0 56 60.7
Eucgr.B03547 Eucalyptus grandis HOM05D003399 ORTHO05D003393 6.8e-10 66.6 57 59.6
Sc11g0000180 Simmondsia chinensis HOM05D003399 ORTHO05D003393 6.8e-10 66.6 53 64.2
ClCG06G001790 Citrullus lanatus HOM05D003399 ORTHO05D003393 8.9e-10 66.2 51 58.8
Duzib132G1194 Durio zibethinus HOM05D003399 ORTHO05D003393 8.9e-10 66.2 57 59.6
Sed0023362 Sechium edule HOM05D003399 ORTHO05D003393 1.5e-09 65.5 51 60.8
Oeu019432.1 Olea europaea HOM05D003399 ORTHO05D003393 3.4e-09 64.3 56 53.6
RcHm_v2.0_Chr4g0429231 Rosa chinensis HOM05D003399 ORTHO05D003393 3.4e-09 64.3 62 51.6
THA.LOC104825469 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 3.4e-09 64.3 57 54.4
FAN12G0769 Fragaria x ananassa HOM05D003399 ORTHO05D003393 4.4e-09 63.9 65 50.8
FAN17G2315 Fragaria x ananassa HOM05D003399 ORTHO05D003393 4.4e-09 63.9 65 50.8
unitig_22.g6383 Utricularia gibba HOM05D003399 ORTHO05D003393 7.5e-09 63.2 53 56.6
MELO3C022349.2 Cucumis melo HOM05D003399 ORTHO05D003393 1.3e-08 62.4 51 56.9
CsaV3_6G007830 Cucumis sativus L. HOM05D003399 ORTHO05D003393 1.3e-08 62.4 51 56.9
PGR119G0713 Punica granatum HOM05D003399 ORTHO05D003393 3.7e-08 60.8 65 46.2
Gohir.D12G144800 Gossypium hirsutum HOM05D003399 ORTHO05D003393 8.3e-08 59.7 59 45.8
Gorai.008G156200 Gossypium raimondii HOM05D003399 ORTHO05D003393 8.3e-08 59.7 59 45.8
Lsat_1_v5_gn_4_1321 Lactuca sativa HOM05D003399 ORTHO05D003393 8.3e-08 59.7 56 53.6
Oeu044505.1 Olea europaea HOM05D003399 ORTHO05D003393 1.1e-07 59.3 56 55.4
Aqoxy5G03202 Aquilegia oxysepala HOM05D003399 ORTHO05D003393 1.4e-07 58.9 55 54.5
Gohir.A12G140200 Gossypium hirsutum HOM05D003399 ORTHO05D003393 1.9e-07 58.5 59 45.8
HanXRQChr08g0210071 Helianthus annuus HOM05D003399 ORTHO05D003393 2.4e-07 58.2 56 48.2
HanXRQChr12g0362291 Helianthus annuus HOM05D003399 ORTHO05D003393 2.4e-07 58.2 57 50.9
Os04g0396500 Oryza sativa ssp. japonica HOM05D003399 ORTHO05D003393 7.0e-07 56.6 56 53.6
Gohir.D04G140300 Gossypium hirsutum HOM05D003399 ORTHO05D003393 1.2e-06 55.8 60 51.7
Gorai.012G125300 Gossypium raimondii HOM05D003399 ORTHO05D003393 1.2e-06 55.8 60 51.7
SEGI_35003 Sequoiadendron giganteum HOM05D001069 ORTHO05D003393 1.6e-06 55.5 53 49.1
HPP92_023020 Vanilla planifolia HOM05D003399 ORTHO05D003393 1.6e-06 55.5 56 48.2
Gohir.A04G101200 Gossypium hirsutum HOM05D003399 ORTHO05D003393 4.6e-06 53.9 57 50.9
PSO478G0221 Papaver somniferum HOM05D003399 ORTHO05D003393 4.6e-06 53.9 68 48.5
Zm00001eb084940 Zea mays HOM05D003399 ORTHO05D003393 4.6e-06 53.9 58 46.6
Sc04g0010500 Simmondsia chinensis HOM05D003399 ORTHO05D003393 6.0e-06 53.5 51 47.1
HPP92_020103 Vanilla planifolia HOM05D003399 ORTHO05D003393 6.0e-06 53.5 56 46.4
ECA233G3644 Erigeron canadensis HOM05D003399 ORTHO05D003393 7.8e-06 53.1 56 44.6
HPP92_023093 Vanilla planifolia HOM05D003399 ORTHO05D003393 7.8e-06 53.1 56 48.2


User provided reference genes

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