Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G41130 Arabidopsis lyrata HOM05D006518 ORTHO05D008270 4.8e-48 194.1 96 100.0
AL1G38610 Arabidopsis lyrata HOM05D006518 ORTHO05D008270 1.4e-42 176.0 103 88.3
Thhalv10008695m.g Eutrema salsugineum HOM05D006518 ORTHO05D008270 1.7e-40 169.1 103 84.5
CARHR024970 Cardamine hirsuta HOM05D006518 ORTHO05D008270 2.2e-40 168.7 103 82.5
AT1G26940 Arabidopsis thaliana HOM05D006518 ORTHO05D008270 1.8e-39 165.6 103 84.5
Sp1g21840 Schrenkiella parvula HOM05D006518 ORTHO05D008270 2.4e-39 165.2 103 83.5
Carub.0001s2404 Capsella rubella HOM05D006518 ORTHO05D008270 1.6e-38 162.5 103 82.5
A09p40360 Brassica napus HOM05D006518 ORTHO05D008270 3.5e-38 161.4 103 81.6
BraA09t39533Z Brassica rapa HOM05D006518 ORTHO05D008270 3.5e-38 161.4 103 81.6
BolC5t31137H Brassica oleracea HOM05D006518 ORTHO05D008270 4.5e-38 161.0 103 81.6
BcaC05g26368 Brassica carinata HOM05D006518 ORTHO05D008270 1.0e-37 159.8 103 80.6
C08p22660 Brassica napus HOM05D006518 ORTHO05D008270 8.6e-37 156.8 103 78.6
BolC8t49904H Brassica oleracea HOM05D006518 ORTHO05D008270 8.6e-37 156.8 103 78.6
Aa31LG7G8200 Aethionema arabicum HOM05D006518 ORTHO05D008270 1.1e-36 156.4 103 80.6
A08p27650 Brassica napus HOM05D006518 ORTHO05D008270 1.2e-35 152.9 103 77.7
BraA08t34702Z Brassica rapa HOM05D006518 ORTHO05D008270 1.2e-35 152.9 103 77.7
Manes.05G099400 Manihot esculenta HOM05D006518 ORTHO05D008270 4.9e-32 141.0 96 76.0
THA.LOC104822922 Tarenaya hassleriana HOM05D006518 ORTHO05D008270 1.1e-31 139.8 103 71.8
Glyma.02G105500 Glycine max HOM05D006518 ORTHO05D008270 4.1e-31 137.9 96 75.0
Lalb_Chr17g0340541 Lupinus albus HOM05D006518 ORTHO05D008270 1.6e-30 136.0 98 74.5
VMungo1215G0700 Vigna mungo HOM05D006518 ORTHO05D008270 3.5e-30 134.8 99 72.7
GSVIVG01020024001 Vitis vinifera HOM05D006518 ORTHO05D008270 6.0e-30 134.0 96 72.9
TPR.G11706 Trifolium pratense HOM05D006518 ORTHO05D008270 7.8e-30 133.7 98 73.5
Phvul.002G088300 Phaseolus vulgaris HOM05D006518 ORTHO05D008270 2.3e-29 132.1 99 70.7
Psat2g127240 Pisum sativum HOM05D006518 ORTHO05D008270 5.0e-29 131.0 90 75.6
TWI18G0776 Tripterygium wilfordii HOM05D006518 ORTHO05D008270 5.0e-29 131.0 96 68.8
Duzib251G0137 Durio zibethinus HOM05D006518 ORTHO05D008270 8.6e-29 130.2 92 76.1
Medtr5g039210 Medicago truncatula HOM05D006518 ORTHO05D008270 8.6e-29 130.2 90 75.6
Psat2g127200 Pisum sativum HOM05D006518 ORTHO05D008270 8.6e-29 130.2 90 75.6
Lj2g0006932 Lotus japonicus HOM05D006518 ORTHO05D008270 1.1e-28 129.8 98 71.4
arahy.Tifrunner.gnm1.ann1.251ATU Arachis hypogaea HOM05D006518 ORTHO05D008270 1.5e-28 129.4 90 74.4
arahy.Tifrunner.gnm1.ann1.YAGN0V Arachis hypogaea HOM05D006518 ORTHO05D008270 1.5e-28 129.4 90 74.4
CANSAT64G2267 Cannabis sativa HOM05D006518 ORTHO05D008270 1.5e-28 129.4 95 73.7
Ca_04765_v3 Cicer arietinum L. HOM05D006518 ORTHO05D008270 1.5e-28 129.4 90 74.4
Cpa.g.sc183.33 Carica papaya HOM05D006518 ORTHO05D008270 2.5e-28 128.6 99 66.7
CiPaw.06G082900 Carya illinoinensis HOM05D006518 ORTHO05D008270 2.5e-28 128.6 96 69.8
COL.COLO4_22979 Corchorus olitorius HOM05D006518 ORTHO05D008270 3.3e-28 128.3 93 73.1
Sc04g0004950 Simmondsia chinensis HOM05D006518 ORTHO05D008270 3.3e-28 128.3 99 67.7
Thecc.02G349100 Theobroma cacao HOM05D006518 ORTHO05D008270 4.3e-28 127.9 97 71.1
Atru.chr11.1828 Acer truncatum HOM05D006518 ORTHO05D008270 5.6e-28 127.5 80 80.0
Prupe.1G271800 Prunus persica HOM05D006518 ORTHO05D008270 5.6e-28 127.5 110 63.6
MD13G1074200 Malus domestica HOM05D006518 ORTHO05D008270 9.5e-28 126.7 109 65.1
TAR374G0832 Trochodendron aralioides HOM05D006518 ORTHO05D008270 1.2e-27 126.3 98 67.3
Actinidia19864 Actinidia chinensis HOM05D006518 ORTHO05D008270 2.1e-27 125.6 91 73.6
Dinv16627 Davidia involucrata HOM05D006518 ORTHO05D008270 2.8e-27 125.2 92 68.5
Glyma.01G044900 Glycine max HOM05D006518 ORTHO05D008270 2.8e-27 125.2 96 71.9
Gohir.D02G124600 Gossypium hirsutum HOM05D006518 ORTHO05D008270 2.8e-27 125.2 87 73.6
Migut.L01314 Erythranthe guttata HOM05D006518 ORTHO05D008270 3.6e-27 124.8 98 64.3
Peaxi162Scf00026g00297 Petunia axillaris HOM05D006518 ORTHO05D008270 3.6e-27 124.8 98 68.4
QL03p064826 Quercus lobata HOM05D006518 ORTHO05D008270 4.7e-27 124.4 93 73.1
Sopen01g006240 Solanum pennellii HOM05D006518 ORTHO05D008270 4.7e-27 124.4 99 69.7
Nn4g23099 Nelumbo nucifera HOM05D006518 ORTHO05D008270 8.0e-27 123.6 103 64.1
PGR119G2153 Punica granatum HOM05D006518 ORTHO05D008270 1.8e-26 122.5 96 69.8
Rhsim12G0061300 Rhododendron simsii HOM05D006518 ORTHO05D008270 1.8e-26 122.5 82 75.6
Ah.03g135280 Amaranthus hybridus HOM05D006518 ORTHO05D008270 2.3e-26 122.1 82 73.2
Aqoxy3G03336 Aquilegia oxysepala HOM05D006518 ORTHO05D008270 2.3e-26 122.1 97 66.0
Solyc01g010590.2 Solanum lycopersicum HOM05D006518 ORTHO05D008270 2.3e-26 122.1 99 68.7
Eucgr.G02518 Eucalyptus grandis HOM05D006518 ORTHO05D008270 3.1e-26 121.7 95 69.5
PGSC0003DMG400000875 Solanum tuberosum HOM05D006518 ORTHO05D008270 3.1e-26 121.7 99 68.7
CAN.G38.25 Capsicum annuum HOM05D006518 ORTHO05D008270 5.2e-26 120.9 95 67.4
Hma1.2p1_0598F.1_g186750 Hydrangea macrophylla HOM05D006518 ORTHO05D008270 5.2e-26 120.9 91 69.2
Nitab4.5_0000141g0290 Nicotiana tabacum HOM05D006518 ORTHO05D008270 5.2e-26 120.9 98 67.3
Gorai.005G140100 Gossypium raimondii HOM05D006518 ORTHO05D008270 6.8e-26 120.6 87 70.1
MD16G1075600 Malus domestica HOM05D006518 ORTHO05D008270 6.8e-26 120.6 109 62.4
Nitab4.5_0003566g0030 Nicotiana tabacum HOM05D006518 ORTHO05D008270 6.8e-26 120.6 98 67.3
EL10Ac6g13177 Beta vulgaris HOM05D006518 ORTHO05D008270 8.9e-26 120.2 87 66.7
Gohir.A03G099700 Gossypium hirsutum HOM05D006518 ORTHO05D008270 8.9e-26 120.2 87 71.3
CSS0004247 Camellia sinensis var. sinensis HOM05D006518 ORTHO05D008270 1.5e-25 119.4 88 68.2
CSS0005609 Camellia sinensis var. sinensis HOM05D006518 ORTHO05D008270 1.5e-25 119.4 88 68.2
Ciclev10032751m.g Citrus clementina HOM05D006518 ORTHO05D008270 1.5e-25 119.4 100 62.0
Potri.010G012900 Populus trichocarpa HOM05D006518 ORTHO05D008270 1.5e-25 119.4 90 71.1
Hund25256 Selenicereus undatus HOM05D006518 ORTHO05D008270 1.5e-25 119.4 103 61.2
Cc11_g13260 Coffea canephora HOM05D006518 ORTHO05D008270 2.0e-25 119.0 95 67.4
RcHm_v2.0_Chr4g0440101 Rosa chinensis HOM05D006518 ORTHO05D008270 2.0e-25 119.0 98 66.3
SalBow2G1811 Salvia bowleyana HOM05D006518 ORTHO05D008270 2.6e-25 118.6 104 63.5
SGA_v2.0_scaffold302G47835 Striga asiatica HOM05D006518 ORTHO05D008270 3.4e-25 118.2 98 67.3
FAN07G2562 Fragaria x ananassa HOM05D006518 ORTHO05D008270 7.5e-25 117.1 108 61.1
SalBow2G0178 Salvia bowleyana HOM05D006518 ORTHO05D008270 7.5e-25 117.1 104 62.5
MSTRG.7814 Avicennia marina HOM05D006518 ORTHO05D008270 9.8e-25 116.7 99 62.6
Sed0000225 Sechium edule HOM05D006518 ORTHO05D008270 9.8e-25 116.7 80 75.0
AUR62005750 Chenopodium quinoa HOM05D006518 ORTHO05D008270 1.3e-24 116.3 78 74.4
FAN17G1605 Fragaria x ananassa HOM05D006518 ORTHO05D008270 1.3e-24 116.3 108 61.1
MBI02_g34551_MAGBIO Magnolia biondii HOM05D006518 ORTHO05D008270 2.2e-24 115.5 80 72.5
AUR62028810 Chenopodium quinoa HOM05D006518 ORTHO05D008270 2.9e-24 115.2 77 74.0
ClCG11G007330 Citrullus lanatus HOM05D006518 ORTHO05D008270 2.9e-24 115.2 97 66.0
FAN22G1577 Fragaria x ananassa HOM05D006518 ORTHO05D008270 2.9e-24 115.2 108 60.2
Lsat_1_v5_gn_3_52920 Lactuca sativa HOM05D006518 ORTHO05D008270 2.9e-24 115.2 94 67.0
HPP92_016855 Vanilla planifolia HOM05D006518 ORTHO05D008270 2.9e-24 115.2 80 72.5
FvH4_4g31590 Fragaria vesca HOM05D006518 ORTHO05D008270 3.7e-24 114.8 108 60.2
FAN12G4204 Fragaria x ananassa HOM05D006518 ORTHO05D008270 3.7e-24 114.8 108 60.2
HanXRQChr17g0545181 Helianthus annuus HOM05D006518 ORTHO05D008270 3.7e-24 114.8 94 67.0
ECA246G2657 Erigeron canadensis HOM05D006518 ORTHO05D008270 4.9e-24 114.4 87 65.5
Oeu028298.1 Olea europaea HOM05D006518 ORTHO05D008270 4.9e-24 114.4 98 65.3
MELO3C008553.2 Cucumis melo HOM05D006518 ORTHO05D008270 8.3e-24 113.6 100 62.0
CsaV3_2G010590 Cucumis sativus L. HOM05D006518 ORTHO05D008270 8.3e-24 113.6 100 62.0
Zm00001eb114970 Zea mays HOM05D006518 ORTHO05D008270 8.3e-24 113.6 106 61.3
PSO063G1773 Papaver somniferum HOM05D006518 ORTHO05D008270 1.1e-23 113.2 91 63.7
Os11g0602900 Oryza sativa ssp. japonica HOM05D006518 ORTHO05D008270 4.1e-23 111.3 78 70.5
Pp3c22_14990 Physcomitrium patens HOM05D006518 ORTHO05D008270 5.4e-23 110.9 77 72.7
ATR0684G233 Amborella trichopoda HOM05D006518 ORTHO05D008270 9.2e-23 110.2 91 63.7
Haze_12032 Corylus avellana HOM05D006518 ORTHO05D008270 9.2e-23 110.2 120 54.2
unitig_22.g6524 Utricularia gibba HOM05D006518 ORTHO05D008270 6.0e-22 107.5 86 64.0
AagrBONN_evm.TU.Sc2ySwM_344.4129 Anthoceros agrestis HOM05D006518 ORTHO05D008270 1.1e-20 103.2 77 67.5
Sabra10G0008100 Salix brachista HOM05D006518 ORTHO05D008270 1.1e-20 103.2 100 59.0
Hma1.2p1_0598F.1_g186760 Hydrangea macrophylla HOM05D006518 ORTHO05D008270 1.5e-20 102.8 67 77.6
Mapoly0071s0062 Marchantia polymorpha HOM05D006518 ORTHO05D008270 2.5e-20 102.1 102 57.8
Haze_12039 Corylus avellana HOM05D006518 ORTHO05D008270 1.2e-19 99.8 71 71.8
vmacro01240 Vaccinium macrocarpon HOM05D006518 ORTHO05D008270 1.2e-19 99.8 66 77.3
DCAR_031032 Daucus carota HOM05D006518 ORTHO05D008270 2.1e-19 99.0 67 74.6
CARHR024980 Cardamine hirsuta HOM05D006518 ORTHO05D008270 3.1e-18 95.1 58 81.0
Cre06.g292500 Chlamydomonas reinhardtii HOM05D006518 ORTHO05D008270 2.6e-17 92.0 98 55.1
SMO358G0251 Selaginella moellendorffii HOM05D006518 ORTHO05D008270 5.8e-17 90.9 66 69.7
SalBow1G2824 Salvia bowleyana HOM05D006518 ORTHO05D008270 4.0e-10 68.2 66 56.1
MCO05G545 Micromonas commoda HOM05D006518 ORTHO05D008270 8.9e-10 67.0 70 55.7
Sed0010295 Sechium edule HOM05D006518 ORTHO05D008270 2.6e-09 65.5 74 52.7


User provided reference genes

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