Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G40850 Arabidopsis lyrata HOM05D006885 ORTHO05D008606 1.6e-39 165.6 82 100.0
AT1G27435 Arabidopsis thaliana HOM05D006885 ORTHO05D008606 3.6e-36 154.5 80 95.0
Thhalv10009236m.g Eutrema salsugineum HOM05D006885 ORTHO05D008606 4.8e-36 154.1 82 91.5
Carub.0001s2598 Capsella rubella HOM05D006885 ORTHO05D008606 1.1e-35 152.9 84 91.7
Sp1g23670 Schrenkiella parvula HOM05D006885 ORTHO05D008606 2.2e-33 145.2 82 86.6
CARHR027030 Cardamine hirsuta HOM05D006885 ORTHO05D008606 1.2e-31 139.4 79 88.6
BcaC01g01613 Brassica carinata HOM05D006885 ORTHO05D008606 1.1e-29 132.9 79 82.3
BcaC01g06952 Brassica carinata HOM05D006885 ORTHO05D008606 1.5e-29 132.5 75 84.0
C03p73770 Brassica napus HOM05D006885 ORTHO05D008606 1.5e-29 132.5 79 82.3
A08p26290 Brassica napus HOM05D006885 ORTHO05D008606 1.9e-29 132.1 77 83.1
BraA08t34580Z Brassica rapa HOM05D006885 ORTHO05D008606 1.9e-29 132.1 77 83.1
BcaB03g13983 Brassica carinata HOM05D006885 ORTHO05D008606 1.3e-28 129.4 74 85.1
BolC3t19669H Brassica oleracea HOM05D006885 ORTHO05D008606 4.8e-28 127.5 77 81.8
Aa31LG7G9990 Aethionema arabicum HOM05D006885 ORTHO05D008606 5.3e-27 124.0 79 83.5
BraA07t28960Z Brassica rapa HOM05D006885 ORTHO05D008606 2.0e-26 122.1 75 81.3
A07p11750 Brassica napus HOM05D006885 ORTHO05D008606 2.6e-26 121.7 75 81.3
BcaC06g35293 Brassica carinata HOM05D006885 ORTHO05D008606 4.5e-26 120.9 75 81.3
C07p17740 Brassica napus HOM05D006885 ORTHO05D008606 4.5e-26 120.9 75 81.3
BolC7t42280H Brassica oleracea HOM05D006885 ORTHO05D008606 4.5e-26 120.9 75 81.3
THA.LOC104825479 Tarenaya hassleriana HOM05D006885 ORTHO05D008606 1.4e-24 115.9 65 84.6
Duzib248G1150 Durio zibethinus HOM05D006885 ORTHO05D008606 7.9e-23 110.2 59 88.1
Duzib052G0936 Durio zibethinus HOM05D006885 ORTHO05D008606 1.8e-22 109.0 59 86.4
CiPaw.05G104600 Carya illinoinensis HOM05D006885 ORTHO05D008606 3.9e-22 107.8 77 68.8
AUR62005687 Chenopodium quinoa HOM05D006885 ORTHO05D008606 3.9e-22 107.8 61 85.2
AUR62028871 Chenopodium quinoa HOM05D006885 ORTHO05D008606 6.7e-22 107.1 79 65.8
Cc11_g17420 Coffea canephora HOM05D006885 ORTHO05D008606 8.7e-22 106.7 56 87.5
Thecc.02G198000 Theobroma cacao HOM05D006885 ORTHO05D008606 8.7e-22 106.7 77 68.8
Cfa008736 Carpinus fangiana HOM05D000120 ORTHO05D000068 1.1e-21 106.3 67 79.1
Lsat_1_v5_gn_4_1780 Lactuca sativa HOM05D006885 ORTHO05D008606 1.1e-21 106.3 68 76.5
Phvul.008G000900 Phaseolus vulgaris HOM05D006885 ORTHO05D008606 1.1e-21 106.3 65 76.9
Actinidia19564 Actinidia chinensis HOM05D006885 ORTHO05D008606 1.5e-21 105.9 57 86.0
Migut.K00992 Erythranthe guttata HOM05D006885 ORTHO05D008606 1.5e-21 105.9 76 71.1
MSTRG.471 Avicennia marina HOM05D006885 ORTHO05D008606 1.9e-21 105.5 54 90.7
FvH4_4g23120 Fragaria vesca HOM05D006885 ORTHO05D008606 1.9e-21 105.5 62 80.6
FAN07G1762 Fragaria x ananassa HOM05D006885 ORTHO05D008606 1.9e-21 105.5 62 80.6
FAN12G2334 Fragaria x ananassa HOM05D006885 ORTHO05D008606 1.9e-21 105.5 62 80.6
FAN17G2783 Fragaria x ananassa HOM05D006885 ORTHO05D008606 1.9e-21 105.5 62 80.6
Medtr3g074700 Medicago truncatula HOM05D006885 ORTHO05D008606 1.9e-21 105.5 75 70.7
Nitab4.5_0000913g0010 Nicotiana tabacum HOM05D006885 ORTHO05D008606 1.9e-21 105.5 59 84.7
Oeu011334.1 Olea europaea HOM05D006885 ORTHO05D008606 1.9e-21 105.5 54 90.7
Oeu044483.1 Olea europaea HOM05D006885 ORTHO05D008606 1.9e-21 105.5 54 90.7
Peaxi162Scf00962g00024 Petunia axillaris HOM05D006885 ORTHO05D008606 1.9e-21 105.5 60 83.3
TWI75G1759 Tripterygium wilfordii HOM05D006885 ORTHO05D008606 1.9e-21 105.5 56 85.7
Ca_06520_v3 Cicer arietinum L. HOM05D006885 ORTHO05D008606 2.5e-21 105.1 72 75.0
CsaV3_6G007910 Cucumis sativus L. HOM05D006885 ORTHO05D008606 2.5e-21 105.1 77 70.1
Prupe.1G220300 Prunus persica HOM05D006885 ORTHO05D008606 2.5e-21 105.1 64 78.1
CiPaw.06G106900 Carya illinoinensis HOM05D006885 ORTHO05D008606 3.3e-21 104.8 80 67.5
Atru.chr11.2397 Acer truncatum HOM05D006885 ORTHO05D008606 4.3e-21 104.4 64 78.1
PGR119G0226 Punica granatum HOM05D006885 ORTHO05D008606 4.3e-21 104.4 82 67.1
Sabra16G0207500 Salix brachista HOM05D006885 ORTHO05D008606 4.3e-21 104.4 57 86.0
RcHm_v2.0_Chr4g0429451 Rosa chinensis HOM05D006885 ORTHO05D008606 5.6e-21 104.0 63 79.4
TPR.G15605 Trifolium pratense HOM05D006885 ORTHO05D008606 5.6e-21 104.0 77 68.8
CANSAT01G1896 Cannabis sativa HOM05D006885 ORTHO05D008606 7.4e-21 103.6 72 72.2
ClCG06G001860 Citrullus lanatus HOM05D006885 ORTHO05D008606 7.4e-21 103.6 77 70.1
Dinv33305 Davidia involucrata HOM05D006885 ORTHO05D008606 7.4e-21 103.6 56 85.7
Gohir.A04G101300 Gossypium hirsutum HOM05D006885 ORTHO05D008606 7.4e-21 103.6 54 88.9
Gohir.D04G140400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 7.4e-21 103.6 54 88.9
Gorai.012G125400 Gossypium raimondii HOM05D006885 ORTHO05D008606 7.4e-21 103.6 54 88.9
MD16G1125900 Malus domestica HOM05D006885 ORTHO05D008606 7.4e-21 103.6 64 76.6
ECA232G0525 Erigeron canadensis HOM05D006885 ORTHO05D008606 9.6e-21 103.2 55 87.3
Potri.001G325000 Populus trichocarpa HOM05D006885 ORTHO05D008606 9.6e-21 103.2 57 84.2
Ciclev10033198m.g Citrus clementina HOM05D006885 ORTHO05D008606 1.3e-20 102.8 54 88.9
Aqoxy5G03235 Aquilegia oxysepala HOM05D006885 ORTHO05D008606 1.6e-20 102.4 54 87.0
PGSC0003DMG400011888 Solanum tuberosum HOM05D006885 ORTHO05D008606 2.1e-20 102.1 60 85.0
Hma1.2p1_0459F.1_g157320 Hydrangea macrophylla HOM05D006885 ORTHO05D008606 2.8e-20 101.7 54 87.0
MD13G1125100 Malus domestica HOM05D006885 ORTHO05D008606 2.8e-20 101.7 65 73.8
Manes.11G080000 Manihot esculenta HOM05D006885 ORTHO05D008606 2.8e-20 101.7 55 83.6
TAR629G2182 Trochodendron aralioides HOM05D006885 ORTHO05D008606 2.8e-20 101.7 57 84.2
Manes.04G090052 Manihot esculenta HOM05D006885 ORTHO05D008606 3.7e-20 101.3 76 68.4
unitig_26.g10421 Utricularia gibba HOM05D006885 ORTHO05D008606 3.7e-20 101.3 54 87.0
CAN.G1264.4 Capsicum annuum HOM05D006885 ORTHO05D008606 6.2e-20 100.5 54 88.9
Sopen01g005380 Solanum pennellii HOM05D006885 ORTHO05D008606 6.2e-20 100.5 54 87.0
LjContig00312_ERROPOS870357g0004846 Lotus japonicus HOM05D006885 ORTHO05D008606 8.1e-20 100.1 77 66.2
Dinv25633 Davidia involucrata HOM05D006885 ORTHO05D008606 1.4e-19 99.4 57 78.9
Eucgr.B03538 Eucalyptus grandis HOM05D006885 ORTHO05D008606 1.4e-19 99.4 74 66.2
Lj6A834T26 Lonicera japonica HOM05D006885 ORTHO05D008606 1.4e-19 99.4 65 76.9
DCAR_024641 Daucus carota HOM05D006885 ORTHO05D008606 1.8e-19 99.0 55 81.8
Psat0s1880g0200 Pisum sativum HOM05D006885 ORTHO05D008606 2.4e-19 98.6 72 70.8
Sed0025765 Sechium edule HOM05D006885 ORTHO05D008606 3.1e-19 98.2 62 72.6
Glyma.08G361800 Glycine max HOM05D006885 ORTHO05D008606 4.0e-19 97.8 51 88.2
SalBow2G1383 Salvia bowleyana HOM05D006885 ORTHO05D008606 4.0e-19 97.8 60 81.7
Glyma.18G300000 Glycine max HOM05D006885 ORTHO05D008606 9.0e-19 96.7 59 79.7
Nn2g15930 Nelumbo nucifera HOM05D006885 ORTHO05D008606 9.0e-19 96.7 70 70.0
HPP92_021628 Vanilla planifolia HOM05D006885 ORTHO05D008606 2.6e-18 95.1 57 77.2
HPP92_021686 Vanilla planifolia HOM05D006885 ORTHO05D008606 2.6e-18 95.1 57 77.2
Zm00001eb133070 Zea mays HOM05D006885 ORTHO05D008606 4.5e-18 94.4 71 63.4
Lalb_Chr10g0091171 Lupinus albus HOM05D006885 ORTHO05D008606 7.6e-18 93.6 52 86.5
Zm00001eb408880 Zea mays HOM05D006885 ORTHO05D008606 1.3e-17 92.8 61 73.8
PSO017G7113 Papaver somniferum HOM05D006885 ORTHO05D008606 1.7e-17 92.4 67 67.2
SHI04153 Sapria himalayana HOM05D006885 ORTHO05D008606 1.7e-17 92.4 68 69.1
Ah.03g135790 Amaranthus hybridus HOM05D006885 ORTHO05D008606 2.2e-17 92.0 47 89.4
Hund25491 Selenicereus undatus HOM05D006885 ORTHO05D008606 6.5e-17 90.5 47 87.2
SGA_v2.0_scaffold9G04792 Striga asiatica HOM05D006885 ORTHO05D008606 8.4e-17 90.1 91 54.9
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 1.9e-16 89.0 55 81.8
EL10Ac6g13573 Beta vulgaris HOM05D006885 ORTHO05D008606 4.2e-16 87.8 46 89.1
CSS0038255 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 7.1e-16 87.0 47 85.1
QL03p050754 Quercus lobata HOM05D006885 ORTHO05D008606 1.2e-15 86.3 46 87.0
Dinv09126 Davidia involucrata HOM05D006885 ORTHO05D008606 2.1e-15 85.5 49 81.6
Haze_11752 Corylus avellana HOM05D006885 ORTHO05D008606 2.7e-15 85.1 110 48.2
MELO3C035240.2 Cucumis melo HOM05D006885 ORTHO05D008606 2.7e-15 85.1 47 80.9
CDE05G1244 Ceratophyllum demersum HOM05D006885 ORTHO05D008606 4.6e-15 84.3 73 60.3
ATR0582G111 Amborella trichopoda HOM05D006885 ORTHO05D008606 1.8e-14 82.4 55 78.2
Sc11g0000250 Simmondsia chinensis HOM05D006885 ORTHO05D008606 3.0e-14 81.6 42 88.1
GSVIVG01000942001 Vitis vinifera HOM05D006885 ORTHO05D008606 3.0e-14 81.6 60 68.3
HanXRQChr03g0067371 Helianthus annuus HOM05D006885 ORTHO05D008606 8.7e-14 80.1 44 79.5
Gorai.001G210600 Gossypium raimondii HOM05D006885 ORTHO05D008606 6.2e-12 73.9 60 63.3
Gohir.D07G189020 Gossypium hirsutum HOM05D006885 ORTHO05D008606 2.4e-11 72.0 49 69.4
MBI12_g28748_MAGBIO Magnolia biondii HOM05D006885 ORTHO05D008606 2.0e-10 68.9 57 63.2
CSS0039361 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 4.5e-10 67.8 37 83.8
Gohir.A06G101502 Gossypium hirsutum HOM05D006885 ORTHO05D008606 3.8e-09 64.7 43 67.4
Gohir.D02G113400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 4.2e-08 61.2 38 68.4
Gorai.005G128300 Gossypium raimondii HOM05D006885 ORTHO05D008606 4.2e-08 61.2 38 68.4
TPR.G7690 Trifolium pratense HOM05D006885 ORTHO05D008606 5.5e-08 60.8 28 92.9
AagrBONN_evm.TU.Sc2ySwM_362.2152 Anthoceros agrestis HOM05D006885 ORTHO05D008606 7.9e-07 57.0 57 50.9
Pp3c6_10000 Physcomitrium patens HOM05D006885 ORTHO05D008606 2.3e-06 55.5 66 53.0


User provided reference genes

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