Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G40700 Arabidopsis lyrata HOM05D006962 ORTHO05D008696 4.6e-98 361.3 194 100.0
A09p38640 Brassica napus HOM05D006962 ORTHO05D008696 2.7e-69 265.8 200 71.5
BraA09t39370Z Brassica rapa HOM05D006962 ORTHO05D008696 2.7e-69 265.8 200 71.5
BcaC05g26736 Brassica carinata HOM05D006962 ORTHO05D008696 1.0e-68 263.8 200 71.5
AT1G27300 Arabidopsis thaliana HOM05D006962 ORTHO05D008696 7.2e-67 257.7 201 74.6
C07p17910 Brassica napus HOM05D006962 ORTHO05D008696 6.1e-66 254.6 196 70.4
Carub.0001s2583 Capsella rubella HOM05D006962 ORTHO05D008696 8.0e-66 254.2 200 72.5
BcaNung06812 Brassica carinata HOM05D006962 ORTHO05D008696 4.0e-65 251.9 201 68.7
BolC7t42297H Brassica oleracea HOM05D006962 ORTHO05D008696 6.8e-65 251.1 196 69.9
C05p26000 Brassica napus HOM05D006962 ORTHO05D008696 1.2e-64 250.4 200 68.5
Thhalv10008828m.g Eutrema salsugineum HOM05D006962 ORTHO05D008696 1.2e-64 250.4 199 69.8
BolC5t31319H Brassica oleracea HOM05D006962 ORTHO05D008696 1.5e-64 250.0 200 68.5
Sp1g23540 Schrenkiella parvula HOM05D006962 ORTHO05D008696 3.4e-64 248.8 199 69.3
CARHR026870 Cardamine hirsuta HOM05D006962 ORTHO05D008696 1.7e-63 246.5 205 67.8
BcaC05g26545 Brassica carinata HOM05D006962 ORTHO05D008696 2.2e-63 246.1 200 67.0
Aa31LG7G9900 Aethionema arabicum HOM05D006962 ORTHO05D008696 1.6e-58 229.9 196 66.8
BcaB03g14005 Brassica carinata HOM05D006962 ORTHO05D008696 2.3e-57 226.1 201 63.7
A07p11980 Brassica napus HOM05D006962 ORTHO05D008696 2.9e-52 209.1 200 61.0
BraA07t28983Z Brassica rapa HOM05D006962 ORTHO05D008696 1.1e-51 207.2 200 60.5
THA.LOC104807506 Tarenaya hassleriana HOM05D006962 ORTHO05D008696 1.6e-50 203.4 212 58.0
Gohir.D04G183600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.4e-25 120.6 207 41.1
Gohir.A04G140400 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.8e-25 120.2 211 40.3
Gorai.012G176600 Gossypium raimondii HOM05D006962 ORTHO05D008696 3.1e-25 119.4 209 40.7
Duzib251G0823 Durio zibethinus HOM05D006962 ORTHO05D008696 5.8e-24 115.2 151 48.3
Potri.003G170700 Populus trichocarpa HOM05D006962 ORTHO05D008696 1.7e-23 113.6 157 45.9
COL.COLO4_20424 Corchorus olitorius HOM05D006962 ORTHO05D008696 1.9e-22 110.2 191 38.2
PGR102G1052 Punica granatum HOM05D006962 ORTHO05D008696 3.5e-21 105.9 164 43.9
Thecc.02G205200 Theobroma cacao HOM05D006962 ORTHO05D008696 7.8e-21 104.8 200 38.0
CiPaw.05G108100 Carya illinoinensis HOM05D006962 ORTHO05D008696 1.3e-20 104.0 163 41.7
TWI75G0385 Tripterygium wilfordii HOM05D006962 ORTHO05D008696 1.7e-20 103.6 205 37.1
Sabra03G0124800 Salix brachista HOM05D006962 ORTHO05D008696 2.3e-20 103.2 195 35.4
Manes.13G010300 Manihot esculenta HOM05D006962 ORTHO05D008696 1.1e-19 100.9 177 41.2
Cfa009377 Carpinus fangiana HOM05D006962 ORTHO05D008696 2.5e-19 99.8 163 42.3
TAR629G1477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 2.5e-19 99.8 162 38.3
ClCG06G002190 Citrullus lanatus HOM05D006962 ORTHO05D008696 7.3e-19 98.2 193 36.8
Haze_12436 Corylus avellana HOM05D006962 ORTHO05D008696 1.2e-18 97.4 162 39.5
MELO3C022311.2 Cucumis melo HOM05D006962 ORTHO05D008696 1.2e-18 97.4 193 35.2
QL03p052240 Quercus lobata HOM05D006962 ORTHO05D008696 3.6e-18 95.9 202 37.6
Ciclev10032798m.g Citrus clementina HOM05D006962 ORTHO05D008696 4.7e-18 95.5 208 37.0
Nitab4.5_0006369g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 4.7e-18 95.5 203 35.5
Potri.001G057700 Populus trichocarpa HOM05D006962 ORTHO05D008696 4.7e-18 95.5 148 41.9
Sc14g0009120 Simmondsia chinensis HOM05D006962 ORTHO05D008696 1.4e-17 94.0 151 43.7
Peaxi162Scf00128g01332 Petunia axillaris HOM05D006962 ORTHO05D008696 1.8e-17 93.6 152 38.2
Prupe.1G224100 Prunus persica HOM05D006962 ORTHO05D008696 1.8e-17 93.6 195 36.4
Gohir.D02G147600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 2.4e-17 93.2 188 35.6
Gohir.A03G124600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 3.1e-17 92.8 189 35.4
FvH4_4g23570 Fragaria vesca HOM05D006962 ORTHO05D008696 4.0e-17 92.4 162 42.0
PGSC0003DMG400034312 Solanum tuberosum HOM05D006962 ORTHO05D008696 4.0e-17 92.4 207 34.8
CSS0033119 Camellia sinensis var. sinensis HOM05D006962 ORTHO05D008696 6.9e-17 91.7 201 34.8
CsaV3_6G008260 Cucumis sativus L. HOM05D006962 ORTHO05D008696 6.9e-17 91.7 192 34.9
TAR636G2109 Trochodendron aralioides HOM05D006962 ORTHO05D008696 6.9e-17 91.7 158 38.6
CANSAT01G0828 Cannabis sativa HOM05D006962 ORTHO05D008696 8.9e-17 91.3 205 36.1
Gorai.005G165400 Gossypium raimondii HOM05D006962 ORTHO05D008696 8.9e-17 91.3 188 35.1
Nitab4.5_0000996g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 8.9e-17 91.3 202 33.2
Dinv17575 Davidia involucrata HOM05D006962 ORTHO05D008696 9.9e-16 87.8 212 34.9
MBI07_g11269_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 9.9e-16 87.8 190 33.2
MSTRG.13306 Avicennia marina HOM05D006962 ORTHO05D008696 1.3e-15 87.4 158 38.6
RcHm_v2.0_Chr4g0429971 Rosa chinensis HOM05D006962 ORTHO05D008696 2.2e-15 86.7 156 41.7
Sabra01G0041700 Salix brachista HOM05D000660 ORTHO05D000766 2.2e-15 86.7 159 37.1
Cc11_g17050 Coffea canephora HOM05D006962 ORTHO05D008696 2.9e-15 86.3 227 33.0
Solyc05g015640.3 Solanum lycopersicum HOM05D006962 ORTHO05D008696 2.9e-15 86.3 208 33.7
TPR.G17769 Trifolium pratense HOM05D006962 ORTHO05D008696 3.8e-15 85.9 150 34.0
Nn3g16434 Nelumbo nucifera HOM05D006962 ORTHO05D008696 4.9e-15 85.5 210 33.3
MBI07_g28246_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 6.4e-15 85.1 190 32.6
GSVIVG01010505001 Vitis vinifera HOM05D006962 ORTHO05D008696 1.1e-14 84.3 193 36.3
ClCG07G015460 Citrullus lanatus HOM05D006962 ORTHO05D008696 3.2e-14 82.8 152 39.5
Sopen05g011100 Solanum pennellii HOM05D006962 ORTHO05D008696 4.2e-14 82.4 196 34.2
Glyma.18G005200 Glycine max HOM05D006962 ORTHO05D008696 1.6e-13 80.5 159 35.8
MD16G1121100 Malus domestica HOM05D006962 ORTHO05D008696 1.6e-13 80.5 202 31.2
VMungo1383G1469 Vigna mungo HOM05D006962 ORTHO05D008696 1.6e-13 80.5 161 36.0
CDE05G3434 Ceratophyllum demersum HOM05D006962 ORTHO05D008696 2.1e-13 80.1 164 31.1
Eucgr.B03508 Eucalyptus grandis HOM05D006962 ORTHO05D008696 2.1e-13 80.1 175 34.3
Lj6g0020338 Lotus japonicus HOM05D006962 ORTHO05D008696 2.7e-13 79.7 157 38.9
Ah.03g136040 Amaranthus hybridus HOM05D006962 ORTHO05D008696 1.7e-12 77.0 164 36.0
Cpa.g.sc43.75 Carica papaya HOM05D006962 ORTHO05D008696 2.3e-12 76.6 174 37.4
HanXRQChr08g0214941 Helianthus annuus HOM05D006962 ORTHO05D008696 2.3e-12 76.6 147 38.8
arahy.Tifrunner.gnm1.ann1.AWLH2F Arachis hypogaea HOM05D006962 ORTHO05D008696 5.1e-12 75.5 167 34.7
Ca_16448_v3 Cicer arietinum L. HOM05D006962 ORTHO05D008696 6.6e-12 75.1 138 37.7
Medtr3g085060 Medicago truncatula HOM05D006962 ORTHO05D008696 6.6e-12 75.1 191 32.5
Sed0011154 Sechium edule HOM05D006962 ORTHO05D008696 8.7e-12 74.7 128 38.3
Phvul.001G262900 Phaseolus vulgaris HOM05D006962 ORTHO05D008696 1.1e-11 74.3 157 37.6
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 1.5e-11 73.9 118 39.8
Lsat_1_v5_gn_4_641 Lactuca sativa HOM05D006962 ORTHO05D008696 1.5e-11 73.9 197 35.5
Zm00001eb241800 Zea mays HOM05D006962 ORTHO05D008696 1.9e-11 73.6 143 37.1
CsaV3_4G003050 Cucumis sativus L. HOM05D006962 ORTHO05D008696 2.5e-11 73.2 145 37.2
Atru.chr11.2343 Acer truncatum HOM05D006962 ORTHO05D008696 3.3e-11 72.8 86 46.5
Gohir.D03G043133 Gossypium hirsutum HOM05D006962 ORTHO05D008696 4.3e-11 72.4 64 51.6
PSO017G7099 Papaver somniferum HOM05D006962 ORTHO05D008696 4.3e-11 72.4 177 29.4
Rhsim12G0024900 Rhododendron simsii HOM05D006962 ORTHO05D008696 5.6e-11 72.0 186 31.2
Hund25473 Selenicereus undatus HOM05D006962 ORTHO05D008696 9.6e-11 71.2 167 31.7
Psat5g097440 Pisum sativum HOM05D006962 ORTHO05D008696 1.3e-10 70.9 143 36.4
PSO478G2808 Papaver somniferum HOM05D006962 ORTHO05D008696 2.1e-10 70.1 177 28.2
AUR62028912 Chenopodium quinoa HOM05D006962 ORTHO05D008696 2.8e-10 69.7 130 37.7
DCAR_007000 Daucus carota HOM05D006962 ORTHO05D008696 2.8e-10 69.7 163 34.4
ECA234G1956 Erigeron canadensis HOM05D006962 ORTHO05D008696 3.6e-10 69.3 117 36.8
AUR62005637 Chenopodium quinoa HOM05D006962 ORTHO05D008696 6.2e-10 68.6 126 36.5
HPP92_023534 Vanilla planifolia HOM05D006962 ORTHO05D008696 8.1e-10 68.2 160 29.4
Gorai.003G044100 Gossypium raimondii HOM05D006962 ORTHO05D008696 1.1e-09 67.8 64 51.6
ATR0561G196 Amborella trichopoda HOM05D006962 ORTHO05D008696 1.4e-09 67.4 89 37.1
Actinidia08062 Actinidia chinensis HOM05D006962 ORTHO05D008696 1.8e-09 67.0 150 36.7
Aqoxy3G01577 Aquilegia oxysepala HOM05D006962 ORTHO05D008696 3.1e-09 66.2 123 37.4
Hma1.2p1_0657F.1_g197165 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 9.0e-09 64.7 99 41.4
Hma1.2p1_0967F.1_g242360 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 9.0e-09 64.7 99 41.4
Lalb_Chr23g0278151 Lupinus albus HOM05D006962 ORTHO05D008696 9.0e-09 64.7 155 32.3
TAR629G0477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 9.0e-09 64.7 108 40.7
MELO3C032628.2 Cucumis melo HOM05D006962 ORTHO05D008696 1.2e-08 64.3 157 33.8
SGA_v2.0_scaffold87G27164 Striga asiatica HOM05D006962 ORTHO05D008696 1.2e-08 64.3 112 40.2
Migut.E00010 Erythranthe guttata HOM05D006962 ORTHO05D008696 1.5e-08 63.9 198 28.3
Glyma.11G251800 Glycine max HOM05D006962 ORTHO05D008696 2.6e-08 63.2 93 39.8
Zm00001eb180910 Zea mays HOM05D006962 ORTHO05D008696 2.6e-08 63.2 114 30.7
Os02g0509600 Oryza sativa ssp. japonica HOM05D006962 ORTHO05D008696 1.3e-07 60.8 113 31.0


User provided reference genes

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