Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 0.0e+00 1408.7 710 100.0
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 0.0e+00 1346.3 710 94.6
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 0.0e+00 1324.3 709 93.4
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 0.0e+00 1288.1 710 90.3
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 0.0e+00 1265.4 710 88.6
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 0.0e+00 1261.9 711 89.0
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 0.0e+00 1253.8 708 87.7
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 0.0e+00 1250.3 710 87.3
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 0.0e+00 1249.6 711 87.3
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 0.0e+00 1243.8 711 86.6
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 0.0e+00 1242.3 711 86.5
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 0.0e+00 1227.6 711 85.8
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 0.0e+00 1226.8 711 85.8
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 0.0e+00 1138.3 710 80.4
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 0.0e+00 1087.8 708 77.4
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 2.8e-286 988.4 680 69.6
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 4.2e-282 974.5 708 66.8
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 4.2e-282 974.5 709 66.7
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 7.2e-282 973.8 708 67.4
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 2.1e-281 972.2 709 66.6
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 4.0e-280 968.0 709 66.6
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 1.2e-279 966.5 734 65.0
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 3.5e-276 954.9 713 66.3
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 1.7e-275 952.6 682 67.6
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 6.5e-275 950.7 708 65.1
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 2.5e-274 948.7 708 65.0
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 2.1e-273 945.7 712 65.7
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 2.1e-273 945.7 701 66.2
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 4.7e-273 944.5 772 61.1
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 2.3e-272 942.2 693 65.9
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 3.0e-272 941.8 708 64.7
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 4.0e-272 941.4 710 65.2
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 8.8e-272 940.3 708 64.5
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 8.8e-272 940.3 689 67.3
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 1.0e-264 916.8 715 63.1
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 3.0e-264 915.2 708 63.1
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 3.0e-264 915.2 684 65.8
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 4.0e-264 914.8 714 64.4
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 6.8e-264 914.1 744 61.0
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 8.9e-264 913.7 710 62.4
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 8.9e-264 913.7 712 62.6
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 1.2e-263 913.3 709 62.8
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 2.6e-263 912.1 708 63.0
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 3.4e-263 911.8 708 62.7
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 9.8e-263 910.2 706 62.0
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 1.3e-262 909.8 708 62.4
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 1.7e-262 909.4 709 60.9
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 1.7e-262 909.4 699 63.7
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 2.2e-262 909.1 707 64.8
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 3.7e-262 908.3 708 62.3
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 1.1e-261 906.7 710 62.7
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 1.1e-261 906.7 748 61.4
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 1.4e-261 906.4 709 63.3
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 2.4e-261 905.6 700 62.6
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 5.4e-261 904.4 684 64.0
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 1.1e-258 896.7 708 61.9
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 4.3e-258 894.8 662 64.8
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 5.6e-258 894.4 736 60.3
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 1.2e-257 893.3 682 63.8
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 8.0e-257 890.6 673 64.2
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 8.0e-257 890.6 712 61.4
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 1.0e-256 890.2 692 62.1
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 5.2e-256 887.9 711 62.9
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 8.9e-256 887.1 756 59.0
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 1.4e-253 879.8 654 64.2
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 3.2e-253 878.6 712 62.4
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.2e-252 876.7 707 62.2
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 6.0e-252 874.4 709 61.9
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 1.9e-250 869.4 698 62.0
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 4.3e-250 868.2 686 61.7
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 7.3e-250 867.5 736 59.9
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 1.2e-249 866.7 698 61.9
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 6.2e-249 864.4 613 68.0
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.8e-240 836.3 707 59.7
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 2.0e-239 832.8 734 58.4
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 9.9e-239 830.5 679 61.9
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 7.8e-236 820.8 688 59.2
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 3.3e-234 815.5 649 61.8
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 2.8e-233 812.4 711 57.5
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 3.6e-233 812.0 712 57.7
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 4.0e-232 808.5 756 57.7
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 1.3e-225 786.9 688 57.3
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 4.9e-222 775.0 703 57.5
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 8.7e-219 764.2 537 68.9
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 2.6e-215 752.7 1008 43.7
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 7.1e-213 744.6 618 61.7
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 1.2e-212 743.8 570 63.3
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 4.6e-212 741.9 496 72.4
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 8.7e-211 737.6 632 60.3
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 2.5e-210 736.1 708 53.5
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 3.7e-209 732.3 525 68.6
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 2.7e-204 716.1 677 54.5
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 6.3e-201 704.9 513 66.1
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 2.0e-191 673.3 689 53.6
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 2.0e-186 656.8 580 56.4
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 1.8e-184 650.2 637 52.9
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 1.2e-175 620.9 655 49.5
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 2.7e-172 609.8 430 67.9
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 1.4e-171 607.4 680 47.9
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 2.1e-148 530.4 407 62.9
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 6.1e-148 528.9 386 66.8
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 3.0e-134 483.4 417 57.8
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 2.2e-129 467.2 499 47.9
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 1.2e-119 434.9 394 55.3
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 3.0e-118 430.3 386 56.5
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 2.5e-109 400.6 326 60.1
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 7.3e-109 399.1 441 47.6
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 1.1e-101 375.2 636 40.1
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 5.6e-101 372.9 333 55.3
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 2.2e-97 360.9 285 61.1
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 2.3e-94 350.9 274 63.1
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 6.7e-94 349.4 280 61.4
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 1.3e-84 318.5 272 58.8
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 4.8e-84 316.6 357 50.1
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 2.1e-79 301.2 233 63.9
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-73 282.3 385 40.8
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 3.9e-70 270.4 286 52.1
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 7.0e-67 259.6 660 30.3
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 1.4e-62 245.4 428 35.5
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 5.3e-59 233.4 573 31.4
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.1e-39 168.3 137 59.1
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 6.1e-39 166.8 276 35.5
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 6.1e-39 166.8 364 34.6
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 7.5e-37 159.8 116 69.8
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 9.2e-35 152.9 99 72.7
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 1.9e-32 145.2 215 40.0
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 2.5e-32 144.8 103 68.9
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 9.5e-32 142.9 226 38.5
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 6.8e-30 136.7 223 38.6
Actinidia30670 Actinidia chinensis HOM05D005075 ORTHO05D007097 2.1e-23 115.2 123 48.0
AagrBONN_evm.TU.Sc2ySwM_228.4177 Anthoceros agrestis HOM05D005075 ORTHO05D007097 8.9e-22 109.8 80 65.0
Atru.chr11.2251 Acer truncatum HOM05D005075 ORTHO05D007097 7.5e-21 106.7 85 55.3
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 7.8e-18 96.7 434 24.7
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 5.6e-16 90.5 152 41.4
HPP92_001243 Vanilla planifolia HOM05D005075 ORTHO05D007097 6.2e-15 87.0 96 41.7
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 8.1e-15 86.7 87 50.6
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 2.3e-14 85.1 135 34.1
MBI13_g10206_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.2e-13 82.8 46 73.9
MBI18_g33166_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.6e-13 81.6 53 62.3
MBI18_g47010_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.6e-13 81.6 73 56.2
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 9.9e-13 79.7 387 24.0
MBI18_g06981_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 4.9e-12 77.4 46 69.6
MBI18_g03943_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 8.3e-12 76.6 50 64.0
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 1.2e-10 72.8 58 58.6
MD16G1112100 Malus domestica HOM05D005075 ORTHO05D037935 8.6e-09 66.6 60 55.0
Sabra10G0048500 Salix brachista HOM05D005075 ORTHO05D007097 2.4e-06 58.5 46 65.2


User provided reference genes

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