Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 0.0e+00 1083.9 525 100.0
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 2.2e-288 995.0 525 91.8
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 1.3e-272 942.6 526 86.5
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 2.2e-267 925.2 523 84.9
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 2.4e-258 895.2 525 82.5
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 2.4e-258 895.2 525 82.5
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 9.5e-255 883.2 525 81.0
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 2.3e-253 878.6 525 80.6
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 3.7e-251 871.3 525 79.8
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 6.4e-235 817.4 526 75.3
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 7.1e-226 787.3 525 74.9
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 1.4e-213 746.5 526 69.2
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 6.3e-198 694.5 496 67.9
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 8.8e-176 620.9 521 58.5
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 4.1e-173 612.1 516 59.1
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 4.5e-172 608.6 537 54.2
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 1.7e-171 606.7 355 83.7
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 4.2e-170 602.1 523 57.0
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 7.2e-170 601.3 518 55.8
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 3.6e-169 599.0 533 54.6
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 3.6e-169 599.0 523 56.8
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 2.3e-168 596.3 519 58.8
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 5.2e-168 595.1 518 56.0
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 8.8e-168 594.3 470 59.4
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.6e-167 592.8 492 57.7
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 4.4e-167 592.0 512 56.4
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 9.7e-167 590.9 518 55.8
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 9.7e-167 590.9 535 54.0
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 9.7e-167 590.9 522 56.1
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 1.7e-166 590.1 510 55.7
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 1.7e-166 590.1 474 60.8
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 2.2e-166 589.7 466 61.2
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 4.8e-166 588.6 492 57.5
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 6.3e-166 588.2 518 55.8
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 5.3e-165 585.1 563 51.7
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 5.3e-165 585.1 470 61.1
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 7.0e-165 584.7 474 60.3
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 9.1e-165 584.3 522 55.4
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 1.6e-164 583.6 471 60.7
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 4.5e-164 582.0 474 59.3
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 7.7e-164 581.3 518 55.6
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 1.7e-163 580.1 522 55.0
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 2.9e-163 579.3 474 60.8
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 8.5e-163 577.8 469 61.4
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 4.2e-162 575.5 467 58.2
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 5.5e-162 575.1 522 55.0
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 3.6e-161 572.4 460 58.3
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 8.0e-161 571.2 474 60.1
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 1.0e-160 570.9 477 58.7
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 8.8e-160 567.8 491 57.6
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 8.8e-160 567.8 470 58.3
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 2.0e-159 566.6 471 60.5
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 2.6e-159 566.2 526 54.6
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 1.3e-158 563.9 505 53.3
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 1.3e-158 563.9 523 53.5
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 2.8e-158 562.8 526 53.4
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 6.3e-158 561.6 473 57.9
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 8.3e-158 561.2 475 57.3
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 1.4e-157 560.5 524 54.2
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 4.1e-157 558.9 522 53.6
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 4.1e-157 558.9 525 52.4
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 5.4e-157 558.5 495 54.3
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 9.1e-157 557.8 521 52.6
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 9.1e-157 557.8 464 59.3
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 1.2e-156 557.4 470 57.7
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 1.0e-155 554.3 486 55.6
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 1.3e-155 553.9 463 59.0
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 6.5e-155 551.6 486 55.6
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 8.5e-155 551.2 601 49.1
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 5.5e-154 548.5 478 55.4
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 2.7e-153 546.2 472 56.4
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 3.6e-153 545.8 571 49.7
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 1.4e-152 543.9 514 53.3
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 1.4e-152 543.9 517 53.0
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 8.8e-152 541.2 521 52.6
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 4.9e-150 535.4 571 48.7
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 3.1e-149 532.7 472 55.7
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 2.9e-147 526.2 486 55.3
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 2.9e-147 526.2 486 55.3
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 4.3e-146 522.3 528 52.3
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.4e-144 517.3 469 56.3
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 3.4e-143 512.7 628 45.4
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.7e-142 510.4 469 55.4
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 1.7e-142 510.4 489 50.5
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 1.1e-141 507.7 463 54.6
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 5.9e-140 501.9 509 52.1
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 6.6e-139 498.4 426 57.0
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 1.0e-136 491.1 488 47.7
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 1.0e-136 491.1 477 53.2
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 1.3e-134 484.2 472 51.5
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 2.2e-134 483.4 375 61.6
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 6.4e-134 481.9 474 50.4
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 2.0e-132 476.9 524 48.3
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 1.6e-129 467.2 500 46.6
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 3.5e-116 422.9 278 75.2
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 1.0e-99 368.2 351 53.6
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 1.9e-98 364.0 329 55.9
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 2.9e-94 350.1 499 38.1
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 1.9e-93 347.4 493 40.0
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 4.6e-92 342.8 491 37.1
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 5.3e-88 329.3 296 55.1
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 7.6e-87 325.5 290 54.5
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 3.9e-83 313.2 511 37.4
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 1.3e-81 308.1 298 48.7
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 4.1e-80 303.1 289 53.3
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 1.2e-79 301.6 289 53.3
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 1.4e-77 294.7 219 61.2
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 2.2e-73 280.8 264 54.2
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 1.1e-64 251.9 209 59.3
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 4.8e-57 226.5 335 37.6
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 2.6e-50 204.1 203 50.2
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 2.4e-32 144.4 346 33.2
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 3.1e-32 144.1 202 39.6
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 1.2e-31 142.1 85 75.3
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 1.3e-22 112.1 76 63.2
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 5.0e-22 110.2 127 46.5
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 8.6e-22 109.4 92 54.3
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 7.5e-18 96.3 128 37.5
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 6.4e-17 93.2 100 49.0
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 7.0e-16 89.7 75 60.0
CSS0004694 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.1e-13 82.4 53 69.8
CSS0019302 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.5e-13 82.0 53 69.8
CSS0027478 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 4.7e-12 77.0 53 64.2
CSS0028236 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 4.7e-12 77.0 53 64.2
CSS0047987 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.1e-11 75.9 53 67.9
QL02p008273 Quercus lobata HOM05D006037 ORTHO05D007384 1.8e-11 75.1 40 82.5
SEGI_25624 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 8.9e-11 72.8 177 27.7
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 2.4e-08 64.7 76 42.1
PRCOL_00001454 Prasinoderma coloniale HOM05D020990 ORTHO05D028642 4.6e-07 60.5 208 25.5


User provided reference genes

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