Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.6e-147 526.2 292 100.0
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 4.8e-131 471.5 287 88.2
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 2.6e-113 412.5 294 82.7
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 3.0e-101 372.5 298 73.5
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 1.0e-96 357.5 294 72.4
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 1.5e-95 353.6 294 70.1
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 1.0e-93 347.4 290 67.9
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 6.8e-93 344.7 296 69.6
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 6.8e-93 344.7 296 69.6
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 6.8e-93 344.7 296 69.6
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 2.7e-89 332.8 284 65.5
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 5.2e-85 318.5 294 69.0
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.2e-76 290.8 300 56.0
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 6.4e-75 285.0 301 58.8
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 4.1e-74 282.3 290 57.9
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 1.6e-73 280.4 300 60.7
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 1.6e-73 280.4 300 60.7
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 1.0e-72 277.7 300 60.0
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 1.0e-72 277.7 300 60.0
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 3.3e-71 272.7 293 59.0
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 1.8e-69 266.9 307 58.6
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 3.1e-69 266.2 303 58.4
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.5e-68 263.8 297 59.3
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 1.9e-66 256.9 300 56.7
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.4e-66 256.5 298 57.0
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 3.2e-66 256.1 296 57.1
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 4.1e-66 255.8 300 57.3
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 5.4e-66 255.4 300 56.7
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 6.0e-65 251.9 300 56.3
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 3.6e-62 242.7 305 53.4
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 1.1e-61 241.1 298 55.0
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 9.8e-60 234.6 281 57.7
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.1e-42 177.9 320 43.8
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 1.9e-42 177.2 320 45.0
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 4.2e-42 176.0 324 40.7
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 3.3e-39 166.4 309 42.7
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 5.6e-39 165.6 321 42.7
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 1.6e-38 164.1 312 42.9
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 2.8e-38 163.3 310 41.9
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 2.4e-37 160.2 310 40.0
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 1.3e-35 154.5 312 37.5
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.9e-35 152.5 313 38.0
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 7.1e-34 148.7 310 36.5
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 1.3e-32 144.4 321 35.5
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 8.7e-32 141.7 302 40.1
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 1.5e-31 141.0 315 38.4
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 1.6e-30 137.5 334 32.9
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 6.9e-29 132.1 306 34.0
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 2.6e-28 130.2 317 36.0
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 2.6e-28 130.2 294 38.4
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 4.5e-28 129.4 279 32.3
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 1.7e-27 127.5 285 37.2
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 1.6e-25 120.9 298 30.2
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 3.5e-25 119.8 298 35.6
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 6.0e-25 119.0 292 41.4
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 6.0e-25 119.0 280 31.1
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 6.0e-25 119.0 278 31.7
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 6.0e-25 119.0 306 40.8
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.0e-24 118.2 300 31.3
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.3e-24 117.9 305 31.1
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 1.3e-24 117.9 284 31.0
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 1.3e-24 117.9 285 35.8
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.8e-24 117.5 300 31.0
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 3.0e-24 116.7 299 35.8
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 5.1e-24 115.9 302 29.8
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 1.1e-23 114.8 311 31.8
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 1.1e-23 114.8 306 37.6
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.5e-23 113.6 295 37.3
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 2.5e-23 113.6 302 31.1
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 7.4e-23 112.1 295 36.9
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 7.4e-23 112.1 301 37.5
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 9.6e-23 111.7 311 30.5
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.3e-22 111.3 303 35.0
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.6e-22 110.9 303 35.6
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 2.1e-22 110.5 307 31.9
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 2.1e-22 110.5 303 35.0
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 2.8e-22 110.2 328 34.1
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 2.8e-22 110.2 279 34.1
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 2.8e-22 110.2 300 35.7
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 3.7e-22 109.8 293 37.2
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.8e-21 107.5 310 36.1
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 1.8e-21 107.5 306 38.2
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 2.4e-21 107.1 313 34.5
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 3.1e-21 106.7 302 36.8
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 4.0e-21 106.3 310 36.5
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 4.0e-21 106.3 299 31.8
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 5.3e-21 105.9 313 27.5
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 5.3e-21 105.9 311 28.9
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 5.3e-21 105.9 299 35.5
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.2e-20 104.8 314 34.7
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.2e-20 104.8 288 31.2
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 1.5e-20 104.4 288 31.6
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.5e-20 104.4 276 32.2
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 1.5e-20 104.4 313 35.8
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 2.0e-20 104.0 318 34.6
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 2.0e-20 104.0 293 34.1
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 3.4e-20 103.2 308 37.3
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 3.4e-20 103.2 273 30.4
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 5.8e-20 102.4 310 35.8
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 5.8e-20 102.4 310 30.0
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 7.6e-20 102.1 299 38.8
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.0e-19 101.7 314 33.4
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.7e-19 100.9 312 33.0
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.7e-19 100.9 310 29.4
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 2.2e-19 100.5 313 28.1
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 6.5e-19 99.0 322 34.5
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 8.4e-19 98.6 305 29.8
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 4.2e-18 96.3 308 36.4
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 9.3e-18 95.1 306 30.1
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 2.7e-17 93.6 281 32.4
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 4.6e-17 92.8 301 30.9
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 6.0e-17 92.4 296 34.8
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 6.0e-17 92.4 308 32.8
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 2.3e-16 90.5 320 34.4
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 8.7e-16 88.6 298 32.6
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 8.7e-16 88.6 314 28.7
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 1.9e-15 87.4 164 40.9
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.9e-15 87.4 263 33.5
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 5.7e-15 85.9 305 27.9
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 1.6e-14 84.3 186 32.8
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 2.8e-14 83.6 158 36.7
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 3.7e-14 83.2 277 30.7
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 8.2e-14 82.0 171 33.3
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.1e-13 81.6 311 27.0
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 3.1e-13 80.1 273 30.4
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.5e-12 77.8 311 28.6
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 2.6e-12 77.0 273 27.5
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 4.5e-12 76.3 299 25.4
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 1.0e-11 75.1 307 28.3
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.7e-11 74.3 273 27.1
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 2.9e-11 73.6 248 36.3
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 5.0e-11 72.8 145 35.2
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 5.0e-11 72.8 298 35.2
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 1.1e-10 71.6 257 30.4
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 2.5e-10 70.5 186 31.7
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 4.2e-10 69.7 77 49.4
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 5.5e-10 69.3 297 26.9
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 9.3e-10 68.6 153 34.6
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 1.2e-09 68.2 248 36.3
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 1.2e-09 68.2 255 27.1
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 4.6e-09 66.2 259 33.6
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.9e-08 63.2 174 38.5
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 1.1e-07 61.6 68 47.1
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 1.9e-07 60.8 139 30.9
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 3.3e-07 60.1 155 30.3
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 4.3e-07 59.7 238 30.7
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 9.7e-07 58.5 270 31.1
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 2.2e-06 57.4 129 31.0


User provided reference genes

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