Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G39420 Arabidopsis lyrata HOM05D004942 ORTHO05D005687 0.0e+00 2404.8 1205 100.0
AT1G26330 Arabidopsis thaliana HOM05D004942 ORTHO05D005687 0.0e+00 2159.4 1207 90.6
CARHR025590 Cardamine hirsuta HOM05D004942 ORTHO05D005687 0.0e+00 1875.9 1218 79.6
Thhalv10006590m.g Eutrema salsugineum HOM05D004942 ORTHO05D005687 0.0e+00 1787.3 1218 76.2
Sp1g22360 Schrenkiella parvula HOM05D004942 ORTHO05D005687 0.0e+00 1776.1 1221 75.6
A09p39800 Brassica napus HOM05D004942 ORTHO05D005687 0.0e+00 1714.1 1289 70.0
Carub.0001s2467 Capsella rubella HOM05D004942 ORTHO05D005687 0.0e+00 1710.7 1211 74.9
C05p24600 Brassica napus HOM05D004942 ORTHO05D005687 0.0e+00 1705.3 1290 70.2
BolC5t31196H Brassica oleracea HOM05D004942 ORTHO05D005687 0.0e+00 1705.3 1290 70.2
BraA09t39480Z Brassica rapa HOM05D004942 ORTHO05D005687 0.0e+00 1702.2 1301 69.3
BcaC05g26635 Brassica carinata HOM05D004942 ORTHO05D005687 0.0e+00 1697.9 1284 69.9
BcaC05g26421 Brassica carinata HOM05D004942 ORTHO05D005687 0.0e+00 1690.2 1289 69.7
Aa31LG7G8720 Aethionema arabicum HOM05D004942 ORTHO05D005687 0.0e+00 1304.3 1183 61.1
THA.LOC104822000 Tarenaya hassleriana HOM05D004942 ORTHO05D005687 0.0e+00 1182.2 1240 54.1
Cfa008858 Carpinus fangiana HOM05D004942 ORTHO05D005687 9.9e-207 724.9 1298 39.0
QL03p073561 Quercus lobata HOM05D004942 ORTHO05D005687 2.2e-206 723.8 1311 38.4
Haze_11879 Corylus avellana HOM05D004942 ORTHO05D005687 6.4e-206 722.2 1321 38.7
Manes.01G026200 Manihot esculenta HOM05D004942 ORTHO05D005687 1.1e-202 711.4 1265 38.0
Duzib251G0048 Durio zibethinus HOM05D004942 ORTHO05D005687 4.3e-202 709.5 1309 37.3
Thecc.02G326800 Theobroma cacao HOM05D004942 ORTHO05D005687 5.6e-202 709.1 1311 38.9
CiPaw.06G093500 Carya illinoinensis HOM05D004942 ORTHO05D005687 2.9e-198 696.8 1250 38.0
Potri.008G097700 Populus trichocarpa HOM05D004942 ORTHO05D005687 6.4e-198 695.7 1299 36.0
GSVIVG01012245001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.3e-195 688.0 1244 37.8
Gorai.008G175800 Gossypium raimondii HOM05D004942 ORTHO05D005687 3.7e-193 679.9 1323 36.6
Prupe.1G290000 Prunus persica HOM05D004942 ORTHO05D005687 2.8e-185 653.7 1300 37.2
Cpa.g.sc1669.1 Carica papaya HOM05D004942 ORTHO05D005687 1.1e-184 651.7 1234 37.8
TWI79G0892 Tripterygium wilfordii HOM05D004942 ORTHO05D005687 1.5e-175 621.3 1224 36.0
CANSAT64G2200 Cannabis sativa HOM05D004942 ORTHO05D005687 8.5e-174 615.5 1242 34.5
RcHm_v2.0_Chr4g0437911 Rosa chinensis HOM05D004942 ORTHO05D005687 7.2e-173 612.5 1330 34.6
MD16G1059100 Malus domestica HOM05D004942 ORTHO05D005687 1.2e-172 611.7 1429 34.4
Ciclev10033741m.g Citrus clementina HOM05D004942 ORTHO05D005687 2.7e-172 610.5 1207 36.0
FAN22G2425 Fragaria x ananassa HOM05D004942 ORTHO05D005687 3.6e-172 610.1 1316 35.4
Sabra08G0073900 Salix brachista HOM05D004942 ORTHO05D005687 1.0e-171 608.6 1345 35.2
FvH4_4g29660 Fragaria vesca HOM05D004942 ORTHO05D005687 6.9e-168 595.9 1295 34.5
FAN07G2875 Fragaria x ananassa HOM05D004942 ORTHO05D005687 5.5e-165 586.3 1350 34.0
Aqoxy3G00534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 2.6e-162 577.4 1311 33.8
FAN12G1725 Fragaria x ananassa HOM05D004942 ORTHO05D005687 1.4e-160 571.6 1332 33.8
Sc04g0007460 Simmondsia chinensis HOM05D004942 ORTHO05D005687 3.1e-160 570.5 1317 33.2
Rhsim09G0125700 Rhododendron simsii HOM05D004942 ORTHO05D005687 1.6e-159 568.2 1385 32.6
Nn3g17507 Nelumbo nucifera HOM05D004942 ORTHO05D005687 2.1e-156 557.8 1426 31.3
Aqoxy4G01534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 1.2e-151 542.0 1318 32.3
Oeu020362.1 Olea europaea HOM05D004942 ORTHO05D005687 1.6e-151 541.6 1243 32.4
Hma1.2p1_2519F.1_g323790 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 5.9e-151 539.7 1197 34.2
Cc11_g11760 Coffea canephora HOM05D004942 ORTHO05D005687 5.0e-150 536.6 1267 33.8
Hund25161 Selenicereus undatus HOM05D004942 ORTHO05D005687 2.3e-147 527.7 1250 33.0
VMungo0251G2230 Vigna mungo HOM05D004942 ORTHO05D005687 2.3e-147 527.7 1252 32.3
Lalb_Chr09g0334721 Lupinus albus HOM05D004942 ORTHO05D005687 5.2e-147 526.6 1354 32.3
COL.COLO4_27850 Corchorus olitorius HOM05D004942 ORTHO05D005687 1.2e-146 525.4 1219 33.1
Glyma.16G091700 Glycine max HOM05D004942 ORTHO05D005687 2.6e-146 524.2 1248 32.6
PGR031G3471 Punica granatum HOM05D004942 ORTHO05D005687 3.4e-146 523.9 1277 32.8
PSO478G0521 Papaver somniferum HOM05D004942 ORTHO05D005687 4.8e-145 520.0 1365 31.9
PSO017G2640 Papaver somniferum HOM05D004942 ORTHO05D005687 6.3e-145 519.6 1374 31.6
Medtr8g066290 Medicago truncatula HOM05D004942 ORTHO05D005687 1.1e-144 518.8 1297 32.4
Phvul.003G282800 Phaseolus vulgaris HOM05D004942 ORTHO05D005687 5.4e-144 516.5 1250 31.9
EL10Ac6g15023 Beta vulgaris HOM05D004942 ORTHO05D005687 5.0e-142 510.0 1307 32.2
AUR62007894 Chenopodium quinoa HOM05D004942 ORTHO05D005687 1.1e-141 508.8 1392 31.0
Lj4g0014066 Lotus japonicus HOM05D004942 ORTHO05D005687 1.9e-141 508.1 1246 32.3
Ah.03g138750 Amaranthus hybridus HOM05D004942 ORTHO05D005687 3.6e-140 503.8 1297 31.8
Peaxi162Scf00175g00531 Petunia axillaris HOM05D004942 ORTHO05D005687 1.4e-139 501.9 1254 31.9
Sed0022979 Sechium edule HOM05D004942 ORTHO05D005687 2.3e-139 501.1 1316 30.6
ECA234G0983 Erigeron canadensis HOM05D004942 ORTHO05D005687 2.2e-137 494.6 1247 31.8
Nitab4.5_0000027g0020 Nicotiana tabacum HOM05D004942 ORTHO05D005687 1.2e-135 488.8 1246 31.7
AUR62003077 Chenopodium quinoa HOM05D004942 ORTHO05D005687 1.5e-133 481.9 1467 29.7
MELO3C012244.2 Cucumis melo HOM05D004942 ORTHO05D005687 7.3e-133 479.6 1303 30.5
HanXRQChr17g0568411 Helianthus annuus HOM05D004942 ORTHO05D005687 1.2e-132 478.8 1227 30.7
Psat4g122040 Pisum sativum HOM05D004942 ORTHO05D005687 1.4e-131 475.3 1237 30.7
Migut.L01173 Erythranthe guttata HOM05D004942 ORTHO05D005687 2.6e-130 471.1 1235 32.0
Nitab4.5_0003545g0010 Nicotiana tabacum HOM05D004942 ORTHO05D005687 5.7e-130 469.9 1265 31.9
ClCG05G022730 Citrullus lanatus HOM05D004942 ORTHO05D005687 1.4e-128 465.3 1294 29.9
Lj3A1029T37 Lonicera japonica HOM05D004942 ORTHO05D005687 8.6e-126 456.1 1357 30.3
MBI16_g37883_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 5.6e-125 453.4 1598 28.7
Gohir.A12G159900 Gossypium hirsutum HOM05D004942 ORTHO05D005687 2.1e-124 451.4 921 35.8
Sopen05g006850 Solanum pennellii HOM05D004942 ORTHO05D005687 7.5e-122 443.0 1517 28.3
Hma1.2p1_0566F.1_g179990 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 3.7e-121 440.7 1172 31.9
Solyc05g012060.4 Solanum lycopersicum HOM05D004942 ORTHO05D005687 3.2e-120 437.6 1517 28.3
Gohir.D12G163200 Gossypium hirsutum HOM05D004942 ORTHO05D005687 2.7e-119 434.5 958 34.6
SalBow2G1731 Salvia bowleyana HOM05D004942 ORTHO05D005687 6.0e-119 433.3 1234 31.1
SGA_v2.0_scaffold16G07813 Striga asiatica HOM05D004942 ORTHO05D005687 2.1e-116 424.9 1255 30.9
Psat1g014920 Pisum sativum HOM05D004942 ORTHO05D005687 2.6e-114 417.9 1238 28.8
TPR.G3371 Trifolium pratense HOM05D004942 ORTHO05D005687 5.8e-114 416.8 1203 29.8
ATR0827G101 Amborella trichopoda HOM05D004942 ORTHO05D005687 2.9e-113 414.5 1541 27.4
Os09g0101800 Oryza sativa ssp. japonica HOM05D004942 ORTHO05D005687 4.6e-103 380.6 1246 27.6
Ca_22664_v3 Cicer arietinum L. HOM05D004942 ORTHO05D005687 3.0e-102 377.9 1053 31.4
CAN.G707.24 Capsicum annuum HOM05D004942 ORTHO05D005687 6.6e-102 376.7 1433 26.9
Migut.A01205 Erythranthe guttata HOM05D004942 ORTHO05D005687 1.8e-99 368.6 1210 28.4
vmacro10440 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 1.8e-99 368.6 474 42.2
HPP92_000888 Vanilla planifolia HOM05D004942 ORTHO05D005687 3.1e-99 367.9 1367 27.5
Zm00001eb095700 Zea mays HOM05D004942 ORTHO05D005687 2.6e-98 364.8 1284 27.3
Lsat_1_v5_gn_4_11720 Lactuca sativa HOM05D004942 ORTHO05D005687 2.5e-93 348.2 1260 26.5
Migut.A01186 Erythranthe guttata HOM05D004942 ORTHO05D005687 8.1e-92 343.2 1205 27.6
CsaV3_5G034290 Cucumis sativus L. HOM05D004942 ORTHO05D005687 1.3e-89 335.9 1047 29.0
DCAR_023750 Daucus carota HOM05D004942 ORTHO05D005687 3.5e-87 327.8 1271 26.6
Dinv34045 Davidia involucrata HOM05D004942 ORTHO05D005687 2.2e-81 308.5 843 31.2
MBI16_g47660_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 7.1e-80 303.5 332 47.3
TAR629G1003 Trochodendron aralioides HOM05D004942 ORTHO05D005687 4.6e-79 300.8 284 50.7
TPR.G31932 Trifolium pratense HOM05D004942 ORTHO05D005687 6.2e-76 290.4 478 35.4
Atru.chr11.1596 Acer truncatum HOM05D004942 ORTHO05D005687 1.1e-72 279.6 274 50.7
Atru.chr11.1595 Acer truncatum HOM05D004942 ORTHO05D005687 3.2e-72 278.1 680 32.9
unitig_26.g10284 Utricularia gibba HOM05D004942 ORTHO05D005687 1.5e-69 269.2 1256 25.3
Actinidia28654 Actinidia chinensis HOM05D004942 ORTHO05D005687 3.1e-67 261.5 461 36.9
TAR629G1720 Trochodendron aralioides HOM05D004942 ORTHO05D005687 5.7e-61 240.7 360 44.4
vmacro10441 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 1.4e-59 236.1 506 35.0
CSS0007829 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 3.1e-59 235.0 924 27.9
CSS0011617 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 3.1e-59 235.0 924 27.9
Gohir.A12G159850 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.5e-58 232.6 222 54.5
TPR.G31934 Trifolium pratense HOM05D004942 ORTHO05D005687 7.9e-55 220.3 452 37.6
Actinidia27212 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.7e-49 202.6 217 51.6
Actinidia28653 Actinidia chinensis HOM05D004942 ORTHO05D005687 8.5e-49 200.3 213 51.2
CDE11G1026 Ceratophyllum demersum HOM05D004942 ORTHO05D005687 7.2e-48 197.2 441 30.2
Gohir.D12G163150 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.7e-41 176.0 118 66.1
SHI10798 Sapria himalayana HOM05D004942 ORTHO05D005687 3.6e-39 168.3 267 38.2
Gorai.012G127400 Gossypium raimondii HOM05D004942 ORTHO05D005687 4.0e-38 164.9 125 60.0
MSTRG.7735 Avicennia marina HOM05D004942 ORTHO05D005687 2.2e-36 159.1 113 64.6
GSVIVG01026037001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.3e-33 149.8 149 51.0
CSS0006420 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.7e-28 132.9 90 68.9
SEGI_21482 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 1.7e-28 132.9 137 47.4
Mapoly0001s0391 Marchantia polymorpha HOM05D004942 ORTHO05D005687 3.7e-28 131.7 133 48.1
SMO269G0037 Selaginella moellendorffii HOM05D004942 ORTHO05D005687 1.2e-26 126.7 1187 20.5
CSS0004641 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.5e-24 119.8 170 42.4
CSS0033973 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.6e-23 116.3 76 69.7
MBI16_g47661_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 6.8e-22 110.9 82 59.8
GSVIVG01015130001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.3e-17 96.7 64 68.8
Aqoxy4G01498 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 1.5e-16 93.2 73 57.5
GSVIVG01037061001 Vitis vinifera HOM05D004942 ORTHO05D005687 2.8e-15 89.0 63 65.1
GSVIVG01026043001 Vitis vinifera HOM05D004942 ORTHO05D005687 8.0e-15 87.4 63 63.5
SHI10799 Sapria himalayana HOM05D004942 ORTHO05D005687 1.8e-14 86.3 96 46.9
MCO07G070 Micromonas commoda HOM05D004942 ORTHO05D005687 8.3e-12 77.4 124 33.1
SEGI_38362 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 5.4e-11 74.7 86 39.5
BolC9t55861H Brassica oleracea HOM05D017037 ORTHO05D021661 1.3e-09 70.1 38 89.5
Eucgr.G02429 Eucalyptus grandis HOM05D004942 ORTHO05D005687 2.3e-09 69.3 67 47.8
SHI10796 Sapria himalayana HOM05D004942 ORTHO05D005687 1.9e-08 66.2 125 32.8
TPR.G8934 Trifolium pratense HOM05D004942 ORTHO05D005687 1.9e-08 66.2 107 37.4
C09p29970 Brassica napus HOM05D017037 ORTHO05D021661 4.3e-08 65.1 45 75.6
BcaC04g21602 Brassica carinata HOM05D017037 ORTHO05D021661 5.6e-08 64.7 45 75.6
C06p35080 Brassica napus HOM05D017037 ORTHO05D021661 2.1e-07 62.8 38 84.2
BolC6t38612H Brassica oleracea HOM05D017037 ORTHO05D021661 8.0e-07 60.8 38 81.6
CBR_g26527 Chara braunii HOM05D001007 ORTHO05D008005 1.4e-06 60.1 100 33.0


User provided reference genes

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