Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.6e-98 362.8 190 100.0
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 2.0e-93 345.9 192 96.4
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 3.6e-87 325.1 194 88.1
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 2.6e-85 318.9 196 85.2
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 2.9e-84 315.5 191 85.9
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 8.3e-84 313.9 191 85.3
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.1e-83 313.5 191 84.8
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 2.0e-82 309.3 193 83.4
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 3.5e-82 308.5 194 84.5
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 4.6e-82 308.1 191 87.4
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 1.0e-81 307.0 191 84.3
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 3.6e-79 298.5 209 74.6
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 8.1e-79 297.4 187 80.2
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 2.2e-76 289.3 190 80.0
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 8.3e-76 287.3 191 79.6
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 4.1e-75 285.0 191 78.5
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 7.8e-74 280.8 191 77.5
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 3.0e-73 278.9 180 82.2
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 6.6e-73 277.7 191 75.4
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 8.6e-73 277.3 192 77.1
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 1.1e-72 276.9 167 85.0
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 1.1e-72 276.9 181 79.0
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 1.9e-72 276.2 191 76.4
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 3.3e-72 275.4 191 76.4
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 9.5e-72 273.9 189 76.7
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 3.6e-71 271.9 190 73.2
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 8.1e-71 270.8 191 75.4
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 1.1e-70 270.4 191 73.3
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 1.4e-70 270.0 191 75.4
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 2.3e-70 269.2 191 74.9
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 2.3e-70 269.2 174 81.0
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 2.3e-70 269.2 191 74.9
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 3.1e-70 268.9 189 73.0
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 3.1e-70 268.9 191 74.9
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 8.9e-70 267.3 191 71.7
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 1.2e-69 266.9 190 73.2
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.5e-69 266.5 191 78.0
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.5e-69 266.5 185 74.1
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 1.5e-69 266.5 190 73.2
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 1.5e-69 266.5 191 72.3
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 2.0e-69 266.2 191 71.2
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 2.0e-69 266.2 189 75.1
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 2.0e-69 266.2 190 73.7
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 2.6e-69 265.8 191 76.4
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 4.4e-69 265.0 191 72.3
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 4.4e-69 265.0 189 73.0
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 4.4e-69 265.0 195 71.8
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.3e-68 263.5 185 74.1
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 2.9e-68 262.3 185 74.1
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 4.9e-68 261.5 188 72.3
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 6.4e-68 261.2 199 69.3
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.1e-67 260.4 195 71.8
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 1.1e-67 260.4 197 71.6
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 1.1e-67 260.4 188 74.5
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 2.4e-67 259.2 193 74.1
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 2.4e-67 259.2 188 73.4
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 3.2e-67 258.8 174 77.6
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 7.1e-67 257.7 190 72.6
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 9.2e-67 257.3 188 73.9
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 1.6e-66 256.5 184 74.5
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.1e-66 256.1 188 72.3
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 4.6e-66 255.0 190 70.0
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 6.0e-66 254.6 202 67.8
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 7.8e-66 254.2 203 67.0
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 7.8e-66 254.2 203 67.0
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 7.8e-66 254.2 203 67.0
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 1.7e-65 253.1 201 66.7
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 3.0e-65 252.3 166 75.9
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 5.1e-65 251.5 193 69.4
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 5.1e-65 251.5 191 68.6
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 5.1e-65 251.5 155 80.6
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 5.1e-65 251.5 192 69.3
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 1.1e-64 250.4 186 70.4
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 1.1e-64 250.4 186 70.4
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 1.5e-64 250.0 196 69.4
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 2.5e-64 249.2 193 68.9
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 2.5e-64 249.2 158 79.1
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 2.5e-64 249.2 191 68.6
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 3.3e-64 248.8 193 68.9
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 3.3e-64 248.8 202 66.8
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 4.3e-64 248.4 188 70.7
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 9.6e-64 247.3 190 66.8
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.6e-63 246.5 183 68.9
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 1.6e-63 246.5 184 67.4
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 2.1e-63 246.1 191 67.0
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 3.6e-63 245.4 188 69.7
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 4.7e-63 245.0 160 75.6
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 6.2e-63 244.6 190 66.8
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 6.2e-63 244.6 189 67.2
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 8.1e-63 244.2 188 69.1
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 1.1e-62 243.8 190 67.4
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 1.4e-62 243.4 165 73.3
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 1.4e-62 243.4 190 66.3
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 2.4e-62 242.7 176 70.5
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 5.2e-62 241.5 159 75.5
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.2e-61 240.4 190 67.9
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 1.5e-61 240.0 189 66.1
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 2.0e-61 239.6 189 66.1
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 4.4e-61 238.4 197 65.5
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 7.6e-61 237.7 172 70.9
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 7.6e-61 237.7 176 68.8
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 9.9e-61 237.3 165 70.9
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 9.9e-61 237.3 190 64.7
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 1.3e-60 236.9 193 66.3
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 3.8e-60 235.3 183 67.2
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 4.9e-60 235.0 171 71.9
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 4.9e-60 235.0 183 68.9
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 6.4e-60 234.6 162 71.6
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 8.4e-60 234.2 153 77.8
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 7.1e-59 231.1 185 69.2
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 1.2e-58 230.3 210 61.4
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 1.6e-58 229.9 156 75.0
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 2.1e-58 229.6 190 64.2
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 6.0e-58 228.0 199 63.8
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 3.9e-57 225.3 194 62.9
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 2.5e-56 222.6 156 72.4
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 1.1e-54 217.2 193 59.6
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 1.1e-54 217.2 190 62.1
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 1.4e-54 216.9 191 59.7
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 1.8e-54 216.5 166 69.9
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 5.3e-54 214.9 153 77.1
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.2e-53 213.8 193 61.1
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 1.2e-53 213.8 258 51.2
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 9.9e-53 210.7 168 64.9
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 2.4e-51 206.1 168 63.7
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 7.9e-50 201.1 181 63.0
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 2.1e-47 193.0 155 61.9
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 1.8e-46 189.9 176 58.5
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 5.3e-46 188.3 148 64.9
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 3.4e-45 185.7 191 55.5
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 7.6e-45 184.5 191 55.0
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 6.4e-44 181.4 111 79.3
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 9.3e-43 177.6 233 48.9
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 2.3e-41 172.9 135 68.9
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 4.3e-40 168.7 163 56.4
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 4.3e-40 168.7 104 76.9
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 9.6e-40 167.5 132 64.4
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.1e-38 164.1 174 54.6
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 4.0e-38 162.2 156 52.6
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 2.9e-36 156.0 91 82.4
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 3.8e-36 155.6 176 51.1
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 1.1e-35 154.1 120 69.2
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.1e-35 154.1 129 61.2
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.4e-35 153.7 130 62.3
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.4e-35 153.7 130 62.3
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 1.9e-35 153.3 144 51.4
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 2.5e-35 152.9 156 53.2
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 4.2e-35 152.1 132 62.1
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.2e-34 150.6 130 63.1
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 6.7e-33 144.8 144 47.9
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 1.9e-32 143.3 140 47.9
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 7.4e-32 141.4 82 80.5
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 4.8e-31 138.7 125 58.4
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 3.3e-24 115.9 119 54.6
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 2.8e-23 112.8 180 41.7
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 3.4e-21 105.9 78 74.4
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 2.5e-19 99.8 86 64.0
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 4.8e-15 85.5 58 67.2
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.0e-09 67.8 104 46.2
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 6.7e-09 65.1 176 34.1
SpUn0008_0090 Schrenkiella parvula HOM05D000004 ORTHO05D027095 6.3e-07 58.5 43 67.4


User provided reference genes

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