Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.0e-72 276.6 135 100.0
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 5.4e-69 264.2 135 96.3
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 8.6e-67 256.9 134 94.0
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 1.0e-64 250.0 135 88.9
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 2.4e-61 238.8 134 85.1
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 7.0e-61 237.3 134 83.6
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 1.0e-59 233.4 136 84.6
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 1.0e-59 233.4 136 84.6
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 1.7e-59 232.6 136 83.1
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 5.0e-59 231.1 136 82.4
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 5.0e-59 231.1 138 82.6
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 8.6e-59 230.3 138 82.6
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 1.1e-58 229.9 136 83.8
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 1.5e-58 229.6 136 81.6
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 4.3e-58 228.0 136 80.9
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 2.1e-57 225.7 136 80.9
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 1.2e-55 219.9 134 78.4
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 7.8e-52 207.2 134 75.4
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 4.7e-49 198.0 129 72.1
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 7.5e-47 190.7 135 71.9
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 2.9e-46 188.7 130 71.5
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 8.3e-46 187.2 114 82.5
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 5.6e-42 174.5 134 64.9
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 6.2e-41 171.0 135 65.9
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 4.0e-40 168.3 131 61.8
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 2.0e-39 166.0 130 62.3
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 3.4e-39 165.2 139 60.4
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 7.6e-39 164.1 134 59.0
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 1.7e-38 162.9 131 61.8
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 6.4e-38 161.0 134 63.4
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 2.4e-37 159.1 139 59.7
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 5.4e-37 157.9 130 60.8
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 7.1e-37 157.5 109 67.9
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 2.7e-36 155.6 130 60.0
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 4.6e-36 154.8 114 61.4
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 2.3e-35 152.5 134 57.5
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 3.0e-35 152.1 113 61.9
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 3.0e-35 152.1 124 60.5
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 1.1e-34 150.2 131 58.0
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 1.1e-34 150.2 134 56.0
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.1e-34 150.2 134 56.0
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 3.3e-34 148.7 135 57.0
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 7.3e-34 147.5 136 56.6
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 1.6e-33 146.4 133 56.4
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.6e-33 146.4 134 55.2
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 2.1e-33 146.0 111 61.3
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 2.1e-33 146.0 137 58.4
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 6.2e-33 144.4 134 54.5
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 6.2e-33 144.4 134 58.2
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 8.1e-33 144.1 116 59.5
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 1.1e-32 143.7 135 54.8
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 1.1e-32 143.7 135 54.8
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 1.8e-32 142.9 142 54.2
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 4.0e-32 141.7 122 60.7
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.5e-31 139.8 136 55.9
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 3.4e-31 138.7 126 57.9
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 4.4e-31 138.3 136 55.1
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 4.4e-31 138.3 145 55.2
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 4.4e-31 138.3 119 60.5
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 4.4e-31 138.3 134 53.7
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 7.6e-31 137.5 129 58.1
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 9.9e-31 137.1 138 55.1
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 9.9e-31 137.1 143 55.2
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 1.3e-30 136.7 115 60.9
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 1.7e-30 136.3 143 54.5
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 2.2e-30 136.0 129 55.8
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 4.9e-30 134.8 136 55.1
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 8.4e-30 134.0 104 60.6
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.9e-29 132.9 123 58.5
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 2.4e-29 132.5 138 52.2
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 2.4e-29 132.5 135 52.6
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 5.4e-29 131.3 129 51.2
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 9.3e-29 130.6 134 56.0
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 1.6e-28 129.8 93 66.7
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 3.5e-28 128.6 132 50.8
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 3.5e-28 128.6 129 54.3
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 1.0e-27 127.1 136 50.7
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.7e-27 126.3 127 52.8
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 1.7e-27 126.3 134 49.3
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 1.7e-27 126.3 110 58.2
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 3.9e-27 125.2 131 48.1
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 5.1e-27 124.8 118 56.8
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 1.1e-26 123.6 136 50.0
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 1.1e-26 123.6 129 50.4
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 1.1e-26 123.6 108 60.2
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 1.5e-26 123.2 128 50.0
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 1.9e-26 122.9 128 48.4
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 1.9e-26 122.9 85 68.2
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.9e-26 122.9 108 60.2
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 2.5e-26 122.5 106 57.5
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 4.3e-26 121.7 114 52.6
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 5.6e-26 121.3 87 65.5
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 5.6e-26 121.3 127 53.5
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 5.6e-26 121.3 96 58.3
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.3e-25 120.2 104 58.7
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 1.6e-25 119.8 95 64.2
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 1.6e-25 119.8 97 57.7
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 2.1e-25 119.4 134 50.0
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 2.1e-25 119.4 134 50.0
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 2.1e-25 119.4 96 57.3
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 4.8e-25 118.2 117 54.7
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 4.8e-25 118.2 114 58.8
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 6.2e-25 117.9 103 55.3
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.1e-24 117.1 127 52.0
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 1.4e-24 116.7 181 40.9
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 1.4e-24 116.7 129 48.8
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.8e-24 116.3 127 51.2
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 4.0e-24 115.2 103 61.2
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 6.9e-24 114.4 111 51.4
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 6.9e-24 114.4 57 89.5
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 6.9e-24 114.4 89 62.9
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 9.0e-24 114.0 94 58.5
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 1.5e-23 113.2 96 55.2
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 2.6e-23 112.5 58 84.5
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 3.4e-23 112.1 112 54.5
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 3.4e-23 112.1 64 76.6
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 9.9e-23 110.5 64 78.1
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 2.2e-22 109.4 113 55.8
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 2.9e-22 109.0 61 75.4
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 4.9e-22 108.2 103 51.5
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 1.1e-21 107.1 130 44.6
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 1.4e-21 106.7 96 56.2
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.4e-21 105.9 57 78.9
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 4.2e-21 105.1 135 45.9
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 1.2e-20 103.6 147 41.5
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 3.0e-19 99.0 74 66.2
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 3.9e-19 98.6 114 50.0
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 3.9e-19 98.6 114 50.0
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 1.5e-18 96.7 58 70.7
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 4.3e-18 95.1 48 85.4
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 2.1e-17 92.8 119 43.7
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 4.8e-17 91.7 113 46.9
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 2.6e-15 85.9 112 50.0
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 1.3e-14 83.6 114 49.1
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 6.4e-14 81.3 54 59.3
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 8.4e-14 80.9 102 46.1
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 1.4e-13 80.1 53 60.4
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.9e-13 79.7 50 62.0
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 9.3e-13 77.4 95 46.3
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 9.3e-13 77.4 49 67.3
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 1.8e-11 73.2 48 70.8
Nitab4.5_0000014g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.8e-11 73.2 128 39.1
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 6.7e-11 71.2 103 44.7
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 1.1e-10 70.5 74 51.4
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 3.3e-10 68.9 92 42.4
COL.COLO4_27990 Corchorus olitorius HOM05D004542 ORTHO05D005380 9.0e-08 60.8 81 43.2
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 2.2e-06 56.2 37 70.3
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 2.9e-06 55.8 79 36.7
CBR_g39054 Chara braunii HOM05D004542 ORTHO05D005380 6.5e-06 54.7 60 38.3


User provided reference genes

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