Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 5.5e-107 391.0 196 100.0
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 1.3e-103 379.8 196 96.9
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 1.4e-102 376.3 196 95.4
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 1.7e-92 342.8 196 86.7
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 2.4e-86 322.4 196 82.7
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 2.4e-86 322.4 196 82.1
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 1.2e-82 310.1 196 76.5
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 1.8e-81 306.2 196 78.6
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 1.5e-80 303.1 196 78.6
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 7.5e-80 300.8 196 78.1
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 2.2e-79 299.3 196 77.6
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 2.2e-79 299.3 196 77.6
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 4.9e-79 298.1 196 77.0
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 1.1e-75 287.0 196 74.5
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 8.0e-74 280.8 196 73.5
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 8.0e-74 280.8 196 73.5
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 3.5e-69 265.4 197 68.5
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 8.3e-63 244.2 196 67.3
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 5.1e-60 235.0 145 80.0
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 3.8e-55 218.8 184 59.2
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 8.4e-55 217.6 185 56.8
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.9e-54 216.5 189 56.1
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 9.2e-54 214.2 186 54.8
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 1.0e-52 210.7 185 57.3
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 1.7e-52 209.9 181 55.2
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 3.9e-52 208.8 185 57.8
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 5.1e-52 208.4 185 54.1
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 8.7e-52 207.6 185 54.6
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 8.7e-52 207.6 185 54.6
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 8.7e-52 207.6 184 55.4
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 8.7e-52 207.6 185 55.7
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 8.7e-52 207.6 185 55.7
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 8.7e-52 207.6 185 55.7
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 1.1e-51 207.2 185 55.1
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 1.1e-51 207.2 185 54.1
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 1.1e-51 207.2 185 54.1
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 1.5e-51 206.8 185 55.7
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 1.5e-51 206.8 189 52.4
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 1.5e-51 206.8 185 55.1
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 1.9e-51 206.5 185 54.6
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 1.9e-51 206.5 185 55.1
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 2.5e-51 206.1 182 57.1
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 3.3e-51 205.7 182 55.5
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 4.3e-51 205.3 185 55.7
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 9.6e-51 204.1 185 53.0
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 9.6e-51 204.1 186 53.8
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 9.6e-51 204.1 185 57.3
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 9.6e-51 204.1 182 54.9
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 1.2e-50 203.8 185 53.5
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 1.6e-50 203.4 185 56.8
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 2.1e-50 203.0 185 54.1
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 2.8e-50 202.6 182 56.0
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 2.8e-50 202.6 189 52.9
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 3.6e-50 202.2 185 54.6
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 8.1e-50 201.1 188 52.7
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 1.1e-49 200.7 182 53.3
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 1.1e-49 200.7 185 55.1
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 1.1e-49 200.7 184 52.7
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 1.4e-49 200.3 182 52.7
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 1.8e-49 199.9 188 54.3
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.8e-49 199.9 185 52.4
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.8e-49 199.9 185 52.4
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 2.4e-49 199.5 200 52.5
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 3.1e-49 199.1 182 53.8
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 4.0e-49 198.7 185 54.1
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 5.3e-49 198.4 184 53.8
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 6.9e-49 198.0 186 53.8
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 6.9e-49 198.0 185 55.1
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 1.2e-48 197.2 188 53.7
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 1.2e-48 197.2 185 56.2
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.2e-48 197.2 185 56.2
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 1.2e-48 197.2 182 53.8
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 1.5e-48 196.8 182 54.4
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 2.0e-48 196.4 188 53.2
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 2.0e-48 196.4 175 54.9
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 2.0e-48 196.4 185 51.4
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 2.6e-48 196.1 175 54.9
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 2.6e-48 196.1 175 54.9
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 3.4e-48 195.7 192 53.1
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 4.4e-48 195.3 183 53.6
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 5.8e-48 194.9 185 52.4
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 7.6e-48 194.5 174 56.9
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 7.6e-48 194.5 185 55.7
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 7.6e-48 194.5 189 50.8
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 9.9e-48 194.1 185 51.4
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 9.9e-48 194.1 190 52.1
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 2.2e-47 193.0 182 52.2
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 2.9e-47 192.6 191 51.8
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 3.8e-47 192.2 175 53.7
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 3.8e-47 192.2 185 51.4
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 3.8e-47 192.2 185 53.0
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 4.9e-47 191.8 192 52.1
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 4.9e-47 191.8 184 52.7
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 6.4e-47 191.4 206 48.5
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 6.4e-47 191.4 186 52.7
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 6.4e-47 191.4 185 49.7
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 8.4e-47 191.0 192 52.6
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 1.1e-46 190.7 185 50.3
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 1.1e-46 190.7 182 50.0
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 1.4e-46 190.3 177 54.2
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 1.4e-46 190.3 174 54.0
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 1.9e-46 189.9 204 47.5
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 3.2e-46 189.1 175 53.1
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 4.2e-46 188.7 185 52.4
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 7.1e-46 188.0 182 50.0
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 1.2e-45 187.2 174 54.6
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 2.7e-45 186.0 188 48.9
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 3.5e-45 185.7 174 54.6
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 7.8e-45 184.5 174 53.4
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 6.6e-44 181.4 197 47.2
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 3.3e-43 179.1 193 46.6
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 5.6e-43 178.3 175 50.3
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 1.3e-42 177.2 172 52.3
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 4.0e-41 172.2 178 47.2
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 2.2e-39 166.4 270 36.3
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 1.9e-38 163.3 156 50.6
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 4.2e-38 162.2 153 51.0
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 5.4e-38 161.8 182 46.7
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 3.3e-35 152.5 159 49.7
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 2.5e-30 136.3 175 46.9
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 3.2e-30 136.0 205 41.5
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 7.1e-30 134.8 185 41.1
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.7e-23 113.6 145 45.5
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 9.3e-22 107.8 112 51.8
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 5.3e-17 92.0 111 42.3
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 5.3e-17 92.0 78 53.8
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 3.4e-16 89.4 73 58.9
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 2.9e-15 86.3 89 50.6
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 2.5e-14 83.2 136 36.0
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 2.7e-13 79.7 138 33.3
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 1.0e-12 77.8 127 35.4
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 2.3e-12 76.6 140 35.0
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 6.7e-12 75.1 90 45.6
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 9.7e-11 71.2 83 47.0
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.8e-09 67.0 87 36.8
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 2.0e-08 63.5 75 44.0
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 6.5e-07 58.5 89 40.4
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.4e-06 57.4 75 38.7
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.4e-06 57.4 75 38.7
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.9e-06 57.0 75 38.7


User provided reference genes

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