Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 3.3e-153 545.0 285 100.0
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 2.0e-150 535.8 285 97.5
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.1e-143 513.5 285 91.9
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 1.2e-142 510.0 285 90.9
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 1.2e-142 510.0 285 90.9
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 1.2e-142 510.0 285 90.9
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 1.5e-142 509.6 277 95.3
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 2.6e-142 508.8 285 90.5
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 2.6e-142 508.8 285 90.5
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 2.6e-142 508.8 285 90.5
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 7.7e-142 507.3 285 92.3
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 1.0e-141 506.9 285 90.2
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 3.8e-141 505.0 285 89.8
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 9.4e-140 500.4 285 89.1
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 2.1e-139 499.2 285 89.5
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 2.7e-139 498.8 285 89.5
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 2.2e-136 489.2 285 87.0
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 1.0e-133 480.3 284 87.7
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 1.6e-123 446.4 286 80.1
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 2.1e-107 392.9 285 73.0
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 6.8e-106 387.9 285 71.6
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 2.0e-105 386.3 282 70.9
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 2.6e-105 386.0 251 80.9
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.7e-104 383.3 285 71.2
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 6.4e-104 381.3 285 70.5
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 8.3e-104 380.9 285 70.5
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 2.4e-103 379.4 285 69.5
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.2e-103 379.0 285 70.2
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 4.1e-103 378.6 282 69.5
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 7.0e-103 377.9 282 69.1
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 2.7e-102 375.9 282 68.8
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 1.0e-101 374.0 289 67.1
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 1.7e-101 373.2 281 68.3
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 3.0e-101 372.5 285 70.5
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 5.0e-101 371.7 282 68.4
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 8.6e-101 370.9 285 67.7
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 1.1e-100 370.5 284 66.9
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 1.1e-100 370.5 286 65.7
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 4.3e-100 368.6 284 68.0
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 5.6e-100 368.2 286 67.8
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 7.3e-100 367.9 284 67.6
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 2.8e-99 365.9 257 73.5
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 4.7e-99 365.2 286 67.5
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 1.1e-98 364.0 284 66.2
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 2.3e-98 362.8 276 68.5
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 3.1e-98 362.5 284 66.2
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 5.2e-98 361.7 285 66.3
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 6.8e-98 361.3 285 67.4
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 8.9e-98 360.9 287 66.9
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 2.0e-97 359.8 284 66.5
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 2.0e-97 359.8 285 68.1
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 2.6e-97 359.4 287 66.2
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 2.6e-97 359.4 285 66.0
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 2.6e-97 359.4 285 66.0
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 2.6e-97 359.4 284 66.2
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 3.4e-97 359.0 282 68.8
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 7.5e-97 357.8 286 67.8
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 2.2e-96 356.3 279 66.3
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 2.9e-96 355.9 287 65.5
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 3.7e-96 355.5 278 67.3
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 4.9e-96 355.1 285 64.9
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 4.9e-96 355.1 287 66.6
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 6.4e-96 354.8 282 65.6
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 6.4e-96 354.8 286 66.8
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 1.1e-95 354.0 287 66.2
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.9e-95 353.2 284 67.6
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 2.4e-95 352.8 283 65.4
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 2.4e-95 352.8 290 64.5
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 4.1e-95 352.1 245 73.1
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 9.2e-95 350.9 293 63.8
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 1.2e-94 350.5 287 64.5
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 1.6e-94 350.1 284 65.5
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 2.7e-94 349.4 278 65.8
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 2.7e-94 349.4 285 65.6
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 4.6e-94 348.6 293 64.2
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.0e-94 348.2 289 65.7
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 6.0e-94 348.2 281 65.1
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 1.7e-93 346.7 280 66.8
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 2.3e-93 346.3 288 64.6
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 3.9e-93 345.5 244 72.5
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 3.9e-93 345.5 286 65.4
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 3.9e-93 345.5 293 61.4
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 5.0e-93 345.1 280 64.3
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 6.6e-93 344.7 271 67.2
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 6.6e-93 344.7 287 63.1
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.5e-92 343.6 227 76.7
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 1.9e-92 343.2 285 64.6
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 1.9e-92 343.2 271 67.5
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 1.2e-91 340.5 321 59.5
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 1.6e-91 340.1 278 66.9
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 2.8e-91 339.3 243 72.0
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.8e-91 339.3 296 63.5
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 8.9e-90 334.3 285 63.9
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 1.2e-89 334.0 277 63.9
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 1.2e-89 334.0 226 72.6
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 3.4e-89 332.4 283 62.5
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 7.5e-89 331.3 280 66.4
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 9.9e-89 330.9 278 64.4
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 1.3e-88 330.5 226 71.7
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 1.7e-88 330.1 278 63.7
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 8.3e-88 327.8 281 61.9
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 1.6e-86 323.6 246 67.9
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 2.7e-86 322.8 216 74.5
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 7.8e-86 321.2 283 60.4
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 1.7e-85 320.1 285 60.7
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 3.9e-85 318.9 279 63.1
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 2.5e-84 316.2 253 65.2
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 3.3e-84 315.8 291 60.1
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 1.6e-83 313.5 277 62.1
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 8.9e-82 307.8 283 60.4
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 2.9e-80 302.8 228 68.0
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 2.7e-78 296.2 283 58.0
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 6.0e-78 295.0 241 64.3
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 4.3e-76 288.9 234 64.1
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 9.6e-76 287.7 234 64.1
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 1.2e-75 287.3 233 61.8
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 4.0e-74 282.3 287 56.8
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 7.6e-73 278.1 215 67.9
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 7.8e-70 268.1 300 48.3
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 1.1e-68 264.2 237 58.6
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 4.3e-68 262.3 262 53.4
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 1.6e-67 260.4 289 50.5
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.5e-60 237.3 197 56.3
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.3e-59 234.2 197 55.8
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.6e-59 233.8 197 55.3
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.7e-59 232.6 197 55.3
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 5.8e-57 225.3 210 59.0
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 3.0e-53 213.0 271 48.3
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.1e-50 204.5 150 66.7
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 7.6e-49 198.4 154 66.2
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.8e-48 196.1 211 54.0
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 6.5e-48 195.3 137 72.3
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 8.4e-48 194.9 197 48.7
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.1e-47 194.5 246 50.0
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.8e-45 187.2 224 50.0
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 7.9e-38 161.8 171 52.6
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-35 153.7 183 46.4
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 4.8e-35 152.5 100 77.0
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 4.8e-35 152.5 100 77.0
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.2e-31 139.4 182 40.7
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 5.1e-29 132.5 118 60.2
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 2.0e-28 130.6 90 74.4
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 9.7e-28 128.3 199 36.2
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 1.7e-24 117.5 192 38.0
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 2.2e-24 117.1 76 73.7
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.4e-23 114.4 206 40.3
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 7.2e-23 112.1 217 32.3
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.7e-22 109.4 190 41.6
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.1e-18 96.7 67 67.2
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 7.0e-18 95.5 51 86.3
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.6e-17 93.6 60 70.0
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 3.5e-17 93.2 91 50.5
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.5e-17 93.2 60 70.0
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.9e-16 90.1 60 68.3
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.6e-14 83.2 66 62.1
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 1.4e-13 81.3 92 50.0
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 5.2e-13 79.3 59 71.2
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 5.2e-13 79.3 59 71.2
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 5.7e-12 75.9 61 65.6
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.5e-12 75.5 53 66.0
BolC6t36313H Brassica oleracea HOM05D004641 ORTHO05D022007 7.7e-09 65.5 44 75.0
BraA03t14352Z Brassica rapa HOM05D004641 ORTHO05D022007 2.2e-08 63.9 46 69.6


User provided reference genes

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