Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 1.3e-46 190.3 175 100.0
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 2.1e-41 172.9 175 78.9
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 5.4e-37 158.3 178 65.7
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 6.6e-35 151.4 176 53.4
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 1.5e-31 140.2 176 46.0
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 1.5e-31 140.2 176 46.0
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 1.5e-31 140.2 176 46.0
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 6.4e-30 134.8 176 54.5
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 6.4e-30 134.8 176 54.5
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 2.4e-29 132.9 176 54.0
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 2.4e-29 132.9 176 54.0
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 4.1e-29 132.1 180 46.1
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 2.7e-28 129.4 181 48.1
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 3.5e-28 129.0 176 44.3
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 3.5e-28 129.0 176 44.3
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 7.3e-26 121.3 123 61.8
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 8.1e-25 117.9 74 79.7
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 8.1e-25 117.9 74 79.7
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 1.8e-24 116.7 74 78.4
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 1.8e-24 116.7 181 44.2
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 1.8e-24 116.7 74 78.4
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 1.8e-24 116.7 181 44.2
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 5.2e-24 115.2 74 78.4
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 6.8e-24 114.8 174 54.6
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 8.9e-24 114.4 74 77.0
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 1.2e-23 114.0 180 45.6
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 1.2e-23 114.0 180 45.6
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 2.6e-23 112.8 74 75.7
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 4.4e-23 112.1 74 77.0
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 1.7e-22 110.2 74 74.3
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 2.9e-22 109.4 74 75.7
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 3.7e-22 109.0 74 74.3
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 8.3e-22 107.8 74 73.0
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 1.1e-21 107.5 78 74.4
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 1.9e-21 106.7 76 71.1
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 2.4e-21 106.3 75 73.3
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 2.4e-21 106.3 75 73.3
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 2.4e-21 106.3 75 73.3
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 2.4e-21 106.3 75 73.3
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 2.4e-21 106.3 75 73.3
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 5.4e-21 105.1 121 49.6
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 7.1e-21 104.8 130 63.1
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 1.6e-20 103.6 121 60.3
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 1.1e-16 90.9 72 69.4
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.7e-14 83.6 69 62.3
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 3.7e-14 82.4 69 62.3
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.1e-13 80.9 69 60.9
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.4e-13 80.5 69 63.8
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 2.4e-13 79.7 72 59.7
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 3.2e-13 79.3 73 60.3
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 4.1e-13 79.0 70 61.4
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 4.1e-13 79.0 70 61.4
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 7.1e-13 78.2 72 59.7
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 7.1e-13 78.2 71 62.0
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 9.2e-13 77.8 72 58.3
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.2e-12 77.4 75 60.0
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.2e-12 77.4 70 60.0
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 1.2e-12 77.4 72 59.7
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 1.2e-12 77.4 71 59.2
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.2e-12 77.4 73 61.6
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 1.6e-12 77.0 76 55.3
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 2.1e-12 76.6 71 59.2
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 2.7e-12 76.3 74 56.8
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 2.7e-12 76.3 70 61.4
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 2.7e-12 76.3 70 61.4
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 2.7e-12 76.3 69 58.0
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 3.5e-12 75.9 72 56.9
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 4.6e-12 75.5 66 63.6
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 6.0e-12 75.1 71 60.6
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 1.3e-11 73.9 76 56.6
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 1.3e-11 73.9 72 58.3
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 1.3e-11 73.9 68 57.4
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 1.3e-11 73.9 75 56.0
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 1.3e-11 73.9 72 56.9
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 1.3e-11 73.9 72 56.9
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 1.3e-11 73.9 69 55.1
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 1.7e-11 73.6 70 60.0
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 2.3e-11 73.2 69 59.4
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 2.3e-11 73.2 72 56.9
BNapus_Darmor_BZH_scaffold_256p00010 Brassica napus HOM05D005097 ORTHO05D006186 3.0e-11 72.8 54 66.7
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 3.0e-11 72.8 70 58.6
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 3.0e-11 72.8 70 57.1
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 3.0e-11 72.8 72 54.2
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 3.0e-11 72.8 71 53.5
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 3.0e-11 72.8 69 53.6
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 3.9e-11 72.4 70 52.9
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 3.9e-11 72.4 71 53.5
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 3.9e-11 72.4 71 53.5
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 5.1e-11 72.0 72 58.3
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 6.6e-11 71.6 68 52.9
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 6.6e-11 71.6 70 58.6
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 6.6e-11 71.6 70 57.1
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 8.6e-11 71.2 75 57.3
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 8.6e-11 71.2 75 53.3
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.1e-10 70.9 74 55.4
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 1.5e-10 70.5 69 53.6
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 1.5e-10 70.5 70 51.4
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.5e-10 70.5 80 51.2
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 1.5e-10 70.5 66 57.6
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 1.5e-10 70.5 72 54.2
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 2.5e-10 69.7 77 53.2
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 2.5e-10 69.7 69 58.0
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 3.3e-10 69.3 73 50.7
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 3.3e-10 69.3 83 51.8
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 3.3e-10 69.3 74 54.1
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 3.3e-10 69.3 83 51.8
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 4.3e-10 68.9 79 51.9
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 4.3e-10 68.9 73 54.8
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 4.3e-10 68.9 74 52.7
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 4.3e-10 68.9 70 51.4
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 4.3e-10 68.9 70 57.1
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 5.6e-10 68.6 68 55.9
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 5.6e-10 68.6 67 59.7
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 7.3e-10 68.2 69 52.2
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 7.3e-10 68.2 70 57.1
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 9.6e-10 67.8 77 51.9
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 1.6e-09 67.0 72 52.8
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 2.8e-09 66.2 67 56.7
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 2.8e-09 66.2 69 52.2
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 4.7e-09 65.5 68 52.9
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 4.7e-09 65.5 71 52.1
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 4.7e-09 65.5 69 55.1
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 6.2e-09 65.1 73 50.7
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 6.2e-09 65.1 72 50.0
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 8.1e-09 64.7 70 50.0
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 1.1e-08 64.3 67 53.7
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 1.4e-08 63.9 75 52.0
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 2.4e-08 63.2 82 48.8
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 2.4e-08 63.2 64 54.7
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 4.0e-08 62.4 76 48.7
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 5.2e-08 62.0 75 50.7
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 6.8e-08 61.6 73 47.9
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 6.8e-08 61.6 63 57.1
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 8.9e-08 61.2 71 50.7
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 1.2e-07 60.8 73 49.3
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 5.8e-07 58.5 73 47.9
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 1.7e-06 57.0 67 47.8
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 3.8e-06 55.8 70 47.1


User provided reference genes

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