Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.7e-177 625.2 309 100.0
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.5e-170 602.8 309 96.1
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.7e-156 555.4 308 86.7
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 6.1e-153 544.3 307 84.7
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 8.0e-153 543.9 310 85.8
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 1.8e-152 542.7 309 84.5
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 3.1e-152 542.0 309 84.1
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.0e-151 539.3 308 83.8
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 2.1e-145 519.2 308 80.8
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 1.8e-144 516.2 308 79.9
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 6.8e-144 514.2 308 80.2
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 1.5e-143 513.1 305 80.7
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.6e-143 512.3 308 78.6
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 5.8e-143 511.1 308 79.2
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 9.8e-143 510.4 308 79.5
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.7e-142 509.6 307 78.8
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 1.7e-142 509.6 305 80.0
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 8.3e-142 507.3 307 79.2
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 5.4e-141 504.6 307 79.2
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.1e-140 502.7 308 77.6
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 4.6e-140 501.5 309 80.9
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.6e-140 501.5 307 77.2
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 7.8e-140 500.7 308 76.9
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 1.0e-139 500.4 308 77.3
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 3.9e-139 498.4 308 76.9
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 8.6e-139 497.3 308 76.9
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 1.2e-137 493.4 296 78.4
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 1.5e-135 486.5 301 80.4
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.5e-135 486.5 308 74.4
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 4.9e-134 481.5 304 77.6
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 1.4e-133 479.9 295 77.6
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 3.5e-132 475.3 308 74.0
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 7.8e-132 474.2 310 73.2
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 8.6e-131 470.7 284 80.6
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 6.8e-128 461.1 308 70.1
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 2.0e-127 459.5 306 70.3
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 2.0e-127 459.5 306 70.3
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 3.4e-127 458.8 306 69.9
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 7.6e-127 457.6 304 70.7
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 1.2e-124 450.3 298 72.8
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.7e-124 449.1 286 73.4
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 3.0e-123 445.7 308 71.1
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 4.8e-121 438.3 306 68.0
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 1.7e-118 429.9 351 63.2
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 2.5e-98 362.8 214 81.3
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 2.5e-98 362.8 214 81.3
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 1.8e-91 340.1 298 54.4
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 5.1e-91 338.6 253 65.2
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 6.7e-91 338.2 295 54.6
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 8.7e-91 337.8 302 53.6
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 4.3e-90 335.5 298 54.7
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 4.3e-90 335.5 292 54.8
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 1.3e-89 334.0 292 56.2
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 1.6e-89 333.6 296 54.7
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 3.7e-89 332.4 292 54.5
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 3.7e-89 332.4 311 53.7
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 3.7e-89 332.4 292 54.5
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 4.8e-89 332.0 306 52.0
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 8.2e-89 331.3 292 56.2
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 8.2e-89 331.3 297 54.9
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 1.1e-88 330.9 301 53.2
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 1.4e-88 330.5 300 54.0
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 1.8e-88 330.1 297 54.2
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 1.8e-88 330.1 302 54.0
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 2.4e-88 329.7 296 53.0
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 3.1e-88 329.3 293 53.6
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 3.1e-88 329.3 299 54.8
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 5.3e-88 328.6 292 54.5
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 6.9e-88 328.2 301 54.2
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 6.9e-88 328.2 292 53.4
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 6.9e-88 328.2 292 55.1
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 9.0e-88 327.8 300 52.3
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 1.2e-87 327.4 303 52.5
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 1.5e-87 327.0 297 54.2
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 2.0e-87 326.6 297 54.2
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 2.6e-87 326.2 299 51.8
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 3.4e-87 325.9 292 55.5
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.9e-87 325.1 220 72.3
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 5.9e-87 325.1 306 51.3
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 5.9e-87 325.1 297 52.9
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 5.9e-87 325.1 297 53.5
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 5.9e-87 325.1 297 53.9
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 7.7e-87 324.7 291 53.3
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 7.7e-87 324.7 292 52.7
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 1.0e-86 324.3 276 56.5
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 1.0e-86 324.3 296 52.4
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 1.0e-86 324.3 305 51.8
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 1.3e-86 323.9 292 54.1
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 1.3e-86 323.9 292 53.8
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 1.7e-86 323.6 297 53.2
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 1.7e-86 323.6 305 51.1
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 2.9e-86 322.8 300 52.0
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 2.9e-86 322.8 301 52.2
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 2.9e-86 322.8 297 52.9
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 3.8e-86 322.4 302 54.3
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 5.0e-86 322.0 291 52.2
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 5.0e-86 322.0 302 53.6
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 6.5e-86 321.6 278 55.0
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 6.5e-86 321.6 291 52.6
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.5e-85 319.7 291 52.2
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 3.2e-85 319.3 292 52.7
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 3.2e-85 319.3 298 52.0
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 4.2e-85 318.9 292 53.8
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 4.2e-85 318.9 299 52.5
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 4.2e-85 318.9 303 53.5
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 5.5e-85 318.5 302 52.3
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 7.2e-85 318.2 297 52.5
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 7.2e-85 318.2 297 51.9
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 1.2e-84 317.4 301 52.5
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 1.2e-84 317.4 297 52.2
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 1.2e-84 317.4 297 52.5
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 2.1e-84 316.6 297 52.2
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 2.7e-84 316.2 292 53.1
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 3.6e-84 315.8 288 52.1
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 3.6e-84 315.8 298 52.0
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 4.6e-84 315.5 290 53.4
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 6.1e-84 315.1 292 51.7
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 7.9e-84 314.7 300 52.7
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.3e-83 313.2 306 51.6
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 3.0e-83 312.8 300 52.3
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 3.9e-83 312.4 291 51.5
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 3.9e-83 312.4 291 51.5
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 1.1e-82 310.8 292 53.1
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 2.0e-82 310.1 308 51.9
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 4.3e-82 308.9 294 52.7
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 4.8e-81 305.4 292 50.3
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 2.4e-80 303.1 303 51.5
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 2.4e-80 303.1 290 49.7
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 3.1e-80 302.8 300 49.3
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 9.1e-80 301.2 291 49.1
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 2.6e-79 299.7 365 43.8
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 3.4e-79 299.3 273 50.9
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.7e-78 297.0 292 51.4
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 2.2e-78 296.6 292 51.4
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 5.0e-78 295.4 294 51.0
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 1.9e-77 293.5 290 49.0
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 5.1e-75 285.4 299 47.8
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 1.1e-74 284.3 150 88.0
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 2.2e-73 280.0 271 49.4
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 2.2e-73 280.0 271 49.4
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.6e-71 273.1 243 53.1
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 5.9e-71 271.9 287 48.1
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 7.7e-71 271.6 297 47.8
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 7.7e-71 271.6 287 47.7
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 2.9e-70 269.6 276 49.6
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 2.1e-68 263.5 281 47.7
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 3.7e-65 252.7 297 45.5
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 7.0e-64 248.4 218 53.7
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 7.0e-64 248.4 308 48.4
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 7.7e-63 245.0 162 75.9
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 2.5e-61 240.0 225 52.0
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 2.1e-60 236.9 218 51.4
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 6.8e-59 231.9 218 50.5
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 1.2e-52 211.1 133 71.4
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 5.7e-50 202.2 133 69.9
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 5.7e-50 202.2 133 69.9
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 3.6e-44 183.0 108 75.0
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 8.9e-43 178.3 169 51.5
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 1.3e-38 164.5 296 33.8
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 1.7e-38 164.1 331 32.9
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 2.3e-38 163.7 210 41.4
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 8.9e-35 151.8 180 43.3
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 6.4e-33 145.6 196 42.3
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 2.1e-15 87.4 74 55.4
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 6.0e-15 85.9 282 25.5
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 7.3e-13 79.0 67 52.2
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 4.4e-10 69.7 74 43.2


User provided reference genes

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