Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 2.7e-103 378.6 190 100.0
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 3.5e-98 361.7 190 96.8
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 5.2e-94 347.8 193 93.3
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 1.8e-91 339.3 186 92.5
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 3.5e-90 335.1 191 89.5
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 2.3e-86 322.4 193 87.0
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 3.1e-86 322.0 194 87.6
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 5.2e-86 321.2 190 88.4
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.2e-85 320.1 190 88.9
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 1.5e-85 319.7 191 88.0
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 5.8e-85 317.8 194 86.6
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 3.7e-84 315.1 191 86.4
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 3.7e-84 315.1 191 86.4
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 1.1e-80 303.5 181 87.8
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 1.2e-79 300.1 181 86.2
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.3e-76 290.0 188 76.1
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 2.2e-76 289.3 188 77.1
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 9.9e-69 263.8 153 90.8
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 2.8e-63 245.7 192 74.0
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 2.7e-58 229.2 180 70.6
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 3.3e-56 222.2 123 92.7
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.5e-53 213.4 189 58.2
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 1.7e-52 209.9 191 59.7
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 1.9e-51 206.5 181 58.0
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 7.1e-51 204.5 190 56.8
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 7.1e-51 204.5 177 58.2
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 7.1e-51 204.5 172 59.9
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 4.6e-50 201.8 184 56.5
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 6.0e-50 201.4 180 58.9
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 6.0e-50 201.4 193 57.5
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 1.3e-49 200.3 172 57.6
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.3e-49 200.3 182 56.6
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 2.3e-49 199.5 171 60.2
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 3.0e-49 199.1 179 54.7
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 3.9e-49 198.7 171 59.1
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 6.6e-49 198.0 163 62.0
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 8.7e-49 197.6 179 55.3
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 1.1e-48 197.2 180 55.6
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 1.5e-48 196.8 178 55.6
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 2.5e-48 196.1 190 54.2
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 5.6e-48 194.9 170 56.5
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 7.3e-48 194.5 173 56.6
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 9.6e-48 194.1 173 57.8
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 1.6e-47 193.4 174 55.7
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.6e-47 193.4 172 56.4
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 2.1e-47 193.0 175 57.1
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 2.1e-47 193.0 173 56.1
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 2.8e-47 192.6 180 56.1
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 2.8e-47 192.6 171 58.5
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 3.6e-47 192.2 171 56.7
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 4.8e-47 191.8 172 56.4
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 6.2e-47 191.4 178 56.2
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 6.2e-47 191.4 170 54.1
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 8.1e-47 191.0 168 57.7
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 2.4e-46 189.5 176 54.5
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 2.4e-46 189.5 182 54.4
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 3.1e-46 189.1 174 54.6
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 3.1e-46 189.1 178 54.5
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 3.1e-46 189.1 169 55.6
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 4.0e-46 188.7 172 55.8
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 6.9e-46 188.0 171 55.6
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 9.0e-46 187.6 174 54.6
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 9.0e-46 187.6 175 57.1
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 9.0e-46 187.6 172 55.8
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 1.2e-45 187.2 169 55.0
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 1.2e-45 187.2 164 57.9
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 1.5e-45 186.8 169 55.0
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 2.0e-45 186.4 168 58.3
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 2.0e-45 186.4 180 53.3
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 2.0e-45 186.4 169 56.2
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.6e-45 186.0 168 54.2
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 2.6e-45 186.0 176 55.1
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 2.6e-45 186.0 173 53.8
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 2.6e-45 186.0 169 55.0
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 3.4e-45 185.7 167 56.3
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 3.4e-45 185.7 171 52.6
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 4.5e-45 185.3 181 53.0
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 4.5e-45 185.3 169 54.4
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 5.8e-45 184.9 185 54.6
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 1.3e-44 183.7 171 55.6
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 2.2e-44 183.0 188 54.3
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.9e-44 182.6 178 53.4
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.9e-44 182.6 171 57.9
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 8.4e-44 181.0 175 53.7
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.2e-43 179.1 168 53.0
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 4.2e-43 178.7 169 53.3
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.2e-43 178.7 171 56.7
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 9.3e-43 177.6 203 49.3
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.2e-42 177.2 171 56.1
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.7e-42 176.0 171 56.1
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 3.5e-42 175.6 180 53.9
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 3.5e-42 175.6 169 52.7
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.6e-42 175.3 161 54.0
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 6.7e-41 171.4 209 45.5
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 2.5e-40 169.5 204 48.0
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.5e-40 169.5 159 52.8
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 3.3e-40 169.1 191 50.3
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 4.3e-40 168.7 188 51.6
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 7.4e-40 167.9 188 52.1
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 9.6e-40 167.5 188 52.1
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 1.6e-39 166.8 237 42.6
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 2.8e-39 166.0 125 65.6
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 8.1e-39 164.5 186 48.4
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 9.0e-38 161.0 147 55.8
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 1.2e-37 160.6 125 64.8
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 2.6e-37 159.5 174 50.0
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 2.2e-36 156.4 125 62.4
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 2.9e-36 156.0 144 57.6
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 4.9e-36 155.2 174 49.4
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 4.9e-36 155.2 192 46.4
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 8.4e-36 154.5 174 50.6
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 1.4e-35 153.7 168 51.2
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 7.1e-35 151.4 185 45.4
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 9.3e-35 151.0 185 46.5
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 1.6e-34 150.2 185 46.5
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 3.5e-34 149.1 164 50.0
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 3.5e-34 149.1 109 68.8
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 6.0e-34 148.3 172 44.8
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 6.0e-34 148.3 122 61.5
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 4.8e-31 138.7 141 51.1
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 1.4e-30 137.1 158 43.7
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 5.9e-29 131.7 186 42.5
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 3.2e-27 125.9 122 51.6
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 1.6e-26 123.6 119 53.8
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 4.6e-26 122.1 124 51.6
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 6.1e-26 121.7 141 46.8
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 1.1e-24 117.5 157 44.6
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 1.5e-24 117.1 131 49.6
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 2.5e-24 116.3 118 51.7
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.7e-24 115.2 121 48.8
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 9.7e-24 114.4 122 50.8
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 1.6e-23 113.6 133 44.4
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 4.5e-21 105.5 180 37.2
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 1.3e-20 104.0 156 42.3
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 3.6e-18 95.9 139 39.6
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 6.1e-18 95.1 174 37.4
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 3.0e-17 92.8 83 59.0
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 3.2e-11 72.8 50 68.0
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 3.2e-11 72.8 50 68.0
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 7.2e-11 71.6 54 63.0
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 1.2e-10 70.9 60 56.7
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 2.1e-10 70.1 50 66.0
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 6.1e-10 68.6 60 55.0
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 6.1e-10 68.6 72 44.4
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 1.0e-09 67.8 124 37.1
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.8e-09 67.0 53 60.4
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 8.2e-07 58.2 41 63.4


User provided reference genes

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