Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G37150 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 6.6e-85 317.4 166 100.0
Carub.0001s2294 Capsella rubella HOM05D008070 ORTHO05D001888 1.8e-74 282.7 167 88.6
AT1G23350 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 5.8e-73 277.7 166 88.0
Sp1g20800 Schrenkiella parvula HOM05D008070 ORTHO05D001888 1.7e-72 276.2 166 87.3
CARHR023800 Cardamine hirsuta HOM05D008070 ORTHO05D001888 4.6e-70 268.1 168 85.1
Thhalv10008931m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 2.1e-67 259.2 169 82.2
BcaC06g35034 Brassica carinata HOM05D008070 ORTHO05D001888 5.4e-63 244.6 165 80.0
BraA07t29145Z Brassica rapa HOM05D008070 ORTHO05D001888 7.1e-63 244.2 165 79.4
BolC7t42570H Brassica oleracea HOM05D008070 ORTHO05D001888 1.2e-62 243.4 165 79.4
BcaB03g11935 Brassica carinata HOM05D008070 ORTHO05D001888 1.0e-61 240.4 164 79.9
BcaC07g39196 Brassica carinata HOM05D008070 ORTHO05D001888 2.3e-61 239.2 163 79.1
BolC8t49825H Brassica oleracea HOM05D008070 ORTHO05D001888 2.3e-61 239.2 163 79.1
BcaB03g14151 Brassica carinata HOM05D008070 ORTHO05D001888 3.0e-61 238.8 165 77.0
A08p28210 Brassica napus HOM05D008070 ORTHO05D001888 2.5e-60 235.7 163 77.9
BraA08t34752Z Brassica rapa HOM05D008070 ORTHO05D001888 2.5e-60 235.7 163 77.9
BcaC05g26248 Brassica carinata HOM05D008070 ORTHO05D001888 3.3e-60 235.3 166 77.1
C05p22620 Brassica napus HOM05D008070 ORTHO05D001888 3.3e-60 235.3 166 77.1
BolC5t30961H Brassica oleracea HOM05D008070 ORTHO05D001888 3.3e-60 235.3 166 77.1
C08p21860 Brassica napus HOM05D008070 ORTHO05D001888 9.6e-60 233.8 163 77.9
BcaB07g32331 Brassica carinata HOM05D008070 ORTHO05D001888 1.8e-58 229.6 166 74.7
Aa31LG7G7380 Aethionema arabicum HOM05D008070 ORTHO05D001888 1.4e-55 219.9 154 72.7
BraA09t39622Z Brassica rapa HOM05D008070 ORTHO05D001888 1.1e-47 193.7 136 76.5
A09p41290 Brassica napus HOM05D008070 ORTHO05D001888 9.3e-47 190.7 136 75.7
Thhalv10019249m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 4.8e-43 178.3 157 60.5
Carub.0002s1726 Capsella rubella HOM05D008070 ORTHO05D001888 6.2e-43 177.9 168 57.7
AL2G29930 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 8.1e-43 177.6 170 58.2
AT1G70540 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 1.4e-42 176.8 170 58.2
BcaC03g15202 Brassica carinata HOM05D008070 ORTHO05D001888 1.5e-41 173.3 167 55.7
C02p27870 Brassica napus HOM05D008070 ORTHO05D001888 1.5e-41 173.3 167 55.7
BolC2t08833H Brassica oleracea HOM05D008070 ORTHO05D001888 1.5e-41 173.3 167 55.7
Sp5g25690 Schrenkiella parvula HOM05D008070 ORTHO05D001888 4.5e-41 171.8 167 56.3
BraA02t06717Z Brassica rapa HOM05D008070 ORTHO05D001888 9.9e-41 170.6 167 55.1
A02p16620 Brassica napus HOM05D008070 ORTHO05D001888 2.9e-40 169.1 167 54.5
CARHR063750 Cardamine hirsuta HOM05D008070 ORTHO05D001888 3.8e-40 168.7 159 59.1
A07p13910 Brassica napus HOM05D001342 ORTHO05D001286 2.2e-32 142.9 107 75.7
C07p20460 Brassica napus HOM05D001342 ORTHO05D001286 2.5e-31 139.4 107 73.8
THA.LOC104822979 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 3.2e-31 139.0 157 50.3
THA.LOC104822159 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 1.6e-30 136.7 163 48.5
Aa31LG4G10410 Aethionema arabicum HOM05D008070 ORTHO05D001888 7.6e-25 117.9 163 44.8
BcaB05g24587 Brassica carinata HOM05D008070 ORTHO05D001888 2.5e-23 112.8 109 54.1
MELO3C010682.2 Cucumis melo HOM05D008070 ORTHO05D001888 2.7e-22 109.4 162 35.8
ClCG08G017790 Citrullus lanatus HOM05D008070 ORTHO05D001888 1.8e-21 106.7 146 40.4
CsaV3_2G024840 Cucumis sativus L. HOM05D008070 ORTHO05D001888 6.7e-21 104.8 159 36.5
Sed0022593 Sechium edule HOM05D008070 ORTHO05D001888 7.4e-20 101.3 134 39.6
Haze_12224 Corylus avellana HOM05D008070 ORTHO05D001888 1.6e-19 100.1 137 40.9
Cfa009190 Carpinus fangiana HOM05D008070 ORTHO05D001888 1.4e-18 97.1 149 37.6
CiPaw.05G184900 Carya illinoinensis HOM05D008070 ORTHO05D001888 2.4e-18 96.3 163 38.7
CANSAT01G1404 Cannabis sativa HOM05D008070 ORTHO05D001888 3.4e-17 92.4 130 39.2
TWI75G1444 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 3.4e-17 92.4 156 34.6
Aa31LG2G9780 Aethionema arabicum HOM05D009121 ORTHO05D001888 1.0e-16 90.9 152 36.8
Atru.chr11.2085 Acer truncatum HOM05D008070 ORTHO05D001888 2.9e-16 89.4 158 38.6
Atru.chr11.2086 Acer truncatum HOM05D008070 ORTHO05D001888 2.9e-16 89.4 158 38.6
TWI36G0098 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 2.9e-16 89.4 143 35.0
MELO3C011974.2 Cucumis melo HOM05D008070 ORTHO05D001888 6.5e-16 88.2 162 35.2
Sed0022116 Sechium edule HOM05D008070 ORTHO05D001888 1.9e-15 86.7 137 36.5
CsaV3_5G031330 Cucumis sativus L. HOM05D008070 ORTHO05D001888 2.5e-15 86.3 135 39.3
Duzib251G0841 Durio zibethinus HOM05D008070 ORTHO05D001888 5.5e-15 85.1 161 34.2
Sed0024894 Sechium edule HOM05D008070 ORTHO05D001888 5.5e-15 85.1 137 39.4
Thhalv10008932m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 2.1e-14 83.2 153 30.7
Manes.13G026900 Manihot esculenta HOM05D008070 ORTHO05D001888 2.1e-14 83.2 148 33.8
THA.LOC104818886 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 4.6e-14 82.0 133 38.3
QL03p058723 Quercus lobata HOM05D010056 ORTHO05D001888 6.1e-14 81.6 155 34.2
THA.LOC104819351 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 7.9e-14 81.3 130 33.1
Ciclev10032926m.g Citrus clementina HOM05D008070 ORTHO05D001888 2.3e-13 79.7 129 36.4
Aa31LG5G17240 Aethionema arabicum HOM05D005742 ORTHO05D001888 3.0e-13 79.3 144 35.4
BolC8t52391H Brassica oleracea HOM05D009121 ORTHO05D001888 3.0e-13 79.3 153 32.7
CARHR010990 Cardamine hirsuta HOM05D009121 ORTHO05D001888 3.0e-13 79.3 130 33.1
A09p64670 Brassica napus HOM05D009121 ORTHO05D001888 3.9e-13 79.0 153 32.7
BraA09t41825Z Brassica rapa HOM05D009121 ORTHO05D001888 3.9e-13 79.0 153 32.7
COL.COLO4_24233 Corchorus olitorius HOM05D008070 ORTHO05D001888 3.9e-13 79.0 135 34.8
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 3.9e-13 79.0 140 37.1
BcaB08g37374 Brassica carinata HOM05D009121 ORTHO05D001888 5.1e-13 78.6 153 32.0
BcaC05g24955 Brassica carinata HOM05D009121 ORTHO05D001888 5.1e-13 78.6 153 30.1
C08p48520 Brassica napus HOM05D009121 ORTHO05D001888 6.7e-13 78.2 153 32.0
CiPaw.06G069400 Carya illinoinensis HOM05D008070 ORTHO05D001888 6.7e-13 78.2 164 34.1
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 6.7e-13 78.2 148 35.1
THA.LOC104809586 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 6.7e-13 78.2 153 32.0
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 1.1e-12 77.4 154 33.1
Carub.0001s1032 Capsella rubella HOM05D009121 ORTHO05D001888 1.1e-12 77.4 129 33.3
Sp1g09470 Schrenkiella parvula HOM05D009121 ORTHO05D001888 1.1e-12 77.4 153 30.1
Sp2g04000 Schrenkiella parvula HOM05D009121 ORTHO05D001888 1.1e-12 77.4 158 32.9
AT1G10770 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 1.5e-12 77.0 152 32.2
BcaC05g30549 Brassica carinata HOM05D005742 ORTHO05D001888 2.0e-12 76.6 160 31.9
AL1G21700 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 3.3e-12 75.9 152 32.2
AT3G36659 Arabidopsis thaliana HOM05D005742 ORTHO05D001888 3.3e-12 75.9 144 34.7
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 3.3e-12 75.9 160 31.2
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 3.3e-12 75.9 160 31.2
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 4.3e-12 75.5 160 31.2
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 4.3e-12 75.5 160 31.2
MELO3C011973.2 Cucumis melo HOM05D008070 ORTHO05D001888 5.7e-12 75.1 158 32.3
ATR1152G035 Amborella trichopoda HOM05D008070 ORTHO05D001888 7.4e-12 74.7 170 32.9
C05p09130 Brassica napus HOM05D009121 ORTHO05D001888 1.3e-11 73.9 152 29.6
CARHR051730 Cardamine hirsuta HOM05D009121 ORTHO05D001888 1.7e-11 73.6 159 31.4
Manes.12G025200 Manihot esculenta HOM05D008070 ORTHO05D001888 1.7e-11 73.6 155 31.6
AL2G15820 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 2.2e-11 73.2 163 31.9
BolC5t29657H Brassica oleracea HOM05D009121 ORTHO05D001888 2.2e-11 73.2 152 28.9
Thhalv10024081m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 2.2e-11 73.2 158 32.9
BcaC07g38628 Brassica carinata HOM05D009121 ORTHO05D001888 2.8e-11 72.8 157 29.9
QL03p058730 Quercus lobata HOM05D008070 ORTHO05D001888 3.7e-11 72.4 149 33.6
QL04p082607 Quercus lobata HOM05D010056 ORTHO05D001888 4.8e-11 72.0 120 34.2
TAR629G1731 Trochodendron aralioides HOM05D008070 ORTHO05D001888 4.8e-11 72.0 165 32.1
AT1G60760 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 6.3e-11 71.6 163 31.9
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 8.2e-11 71.2 160 30.0
Cpa.g.sc69.89 Carica papaya HOM05D008070 ORTHO05D001888 1.4e-10 70.5 131 35.1
TAR622G1131 Trochodendron aralioides HOM05D008070 ORTHO05D001888 1.4e-10 70.5 160 30.0
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 1.8e-10 70.1 161 32.3
A06p07570 Brassica napus HOM05D009121 ORTHO05D001888 3.1e-10 69.3 152 28.3
BraA06t23959Z Brassica rapa HOM05D009121 ORTHO05D001888 3.1e-10 69.3 152 28.3
Sed0000802 Sechium edule HOM05D008070 ORTHO05D001888 3.1e-10 69.3 143 32.9
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 6.9e-10 68.2 144 31.2
Carub.0002s0459 Capsella rubella HOM05D009121 ORTHO05D001888 9.1e-10 67.8 163 30.7
Eucgr.H02532 Eucalyptus grandis HOM05D008070 ORTHO05D001888 1.5e-09 67.0 130 32.3
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 2.0e-09 66.6 154 30.5
MSTRG.21772 Avicennia marina HOM05D005742 ORTHO05D001888 1.0e-08 64.3 140 31.4
CDE02G2547 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 2.2e-08 63.2 141 27.7
MBI10_g44381_MAGBIO Magnolia biondii HOM05D008070 ORTHO05D001888 2.2e-08 63.2 157 31.8
QL04p082804 Quercus lobata HOM05D010056 ORTHO05D001888 2.2e-08 63.2 156 31.4
Rhsim02G0004500 Rhododendron simsii HOM05D005742 ORTHO05D001888 2.9e-08 62.8 146 29.5
BcaC07g38589 Brassica carinata HOM05D009121 ORTHO05D001888 5.0e-08 62.0 152 27.6
Haze_01291 Corylus avellana HOM05D005742 ORTHO05D001888 8.5e-08 61.2 137 31.4
PSO478G3987 Papaver somniferum HOM05D020914 ORTHO05D001888 1.4e-07 60.5 166 26.5
Hma1.2p1_0013F.1_g008650 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 2.5e-07 59.7 139 28.8
QL06p011856 Quercus lobata HOM05D005742 ORTHO05D001888 3.2e-07 59.3 154 31.2
CSS0018735 Camellia sinensis var. sinensis HOM05D009745 ORTHO05D011350 5.5e-07 58.5 136 25.7
Carub.0003s0619 Capsella rubella HOM05D005742 ORTHO05D001888 5.5e-07 58.5 140 31.4
CsaV3_4G001290 Cucumis sativus L. HOM05D005742 ORTHO05D001888 5.5e-07 58.5 155 28.4
Oeu003757.1 Olea europaea HOM05D005742 ORTHO05D001888 7.2e-07 58.2 141 27.0
MBI19_g03227_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 9.4e-07 57.8 160 28.1
Oeu032017.1 Olea europaea HOM05D005742 ORTHO05D001888 9.4e-07 57.8 141 27.0
Cfa015324 Carpinus fangiana HOM05D005742 ORTHO05D001888 1.6e-06 57.0 137 30.7
ClCG10G011490 Citrullus lanatus HOM05D005742 ORTHO05D001888 1.6e-06 57.0 155 27.1
MD03G1299200 Malus domestica HOM05D005742 ORTHO05D001888 1.6e-06 57.0 167 27.5
PSO017G3787 Papaver somniferum HOM05D020914 ORTHO05D023578 1.6e-06 57.0 166 26.5
Dinv44293 Davidia involucrata HOM05D005742 ORTHO05D001888 2.1e-06 56.6 158 26.6
Medtr2g034220 Medicago truncatula HOM05D005742 ORTHO05D001888 2.1e-06 56.6 157 25.5
Potri.002G194900 Populus trichocarpa HOM05D008182 ORTHO05D001888 2.1e-06 56.6 157 33.8
vmacro15186 Vaccinium macrocarpon HOM05D005742 ORTHO05D001888 2.1e-06 56.6 141 27.7
CDE06G2294 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 2.7e-06 56.2 147 28.6
LjContig00081g0023529 Lotus japonicus HOM05D005742 ORTHO05D001888 2.7e-06 56.2 142 24.6
Rhsim04G0235100 Rhododendron simsii HOM05D005742 ORTHO05D001888 2.7e-06 56.2 142 28.2
SalBow8G0437 Salvia bowleyana HOM05D005742 ORTHO05D001888 2.7e-06 56.2 145 27.6
SalBow8G4915 Salvia bowleyana HOM05D005742 ORTHO05D001888 2.7e-06 56.2 145 27.6
CDE07G0112 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 6.1e-06 55.1 153 30.7
TAR633G1530 Trochodendron aralioides HOM05D005742 ORTHO05D001888 6.1e-06 55.1 143 28.0
Cpa.g.sc9.68 Carica papaya HOM05D005742 ORTHO05D001888 7.9e-06 54.7 143 28.0


User provided reference genes

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