Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G36880 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 6.9e-110 400.6 194 100.0
AL1G37000 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 9.6e-104 380.2 191 96.9
AT1G23201 Arabidopsis thaliana HOM05D014944 ORTHO05D017385 1.6e-82 309.7 189 80.4
AL1G36940 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 3.7e-63 245.4 190 67.9
AL7G35920 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 5.4e-62 241.5 175 69.7
AL7G35910 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 8.9e-41 171.0 129 67.4
AL1G36930 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 2.0e-40 169.9 129 67.4
Carub.0001s2278 Capsella rubella HOM05D014944 ORTHO05D017385 4.6e-37 158.7 177 48.0
AL1G25890 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 2.1e-26 123.2 194 37.6
AL1G24290 Arabidopsis lyrata HOM05D005566 ORTHO05D007534 1.3e-20 104.0 202 39.6
SpUn0238_0010 Schrenkiella parvula HOM05D011464 ORTHO05D014025 2.3e-20 103.2 164 38.4
CARHR014430 Cardamine hirsuta HOM05D003879 ORTHO05D003858 5.1e-20 102.1 160 36.2
Carub.0001s1374 Capsella rubella HOM05D003879 ORTHO05D003858 1.5e-19 100.5 163 34.4
Carub.0006s0105 Capsella rubella HOM05D003879 ORTHO05D003858 3.6e-18 95.9 195 36.9
Sp1g12000 Schrenkiella parvula HOM05D011464 ORTHO05D003858 8.1e-18 94.7 152 36.8
C08p16290 Brassica napus HOM05D015260 ORTHO05D003858 1.4e-17 94.0 192 34.4
C08p16700 Brassica napus HOM05D015260 ORTHO05D003858 2.4e-17 93.2 194 34.0
AL1G24200 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 3.1e-17 92.8 185 34.6
AL1G24250 Arabidopsis lyrata HOM05D014944 ORTHO05D007107 1.2e-16 90.9 175 34.3
AL1G25910 Arabidopsis lyrata HOM05D011464 ORTHO05D003858 1.5e-16 90.5 167 36.5
BcaC07g38700 Brassica carinata HOM05D015260 ORTHO05D003858 2.2e-15 86.7 158 33.5
Carub.0004s2200 Capsella rubella HOM05D003879 ORTHO05D003858 2.2e-15 86.7 156 35.3
C08p19630 Brassica napus HOM05D015260 ORTHO05D003858 8.4e-15 84.7 197 30.5
AL1G24380 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 2.3e-12 76.6 136 33.1
AL6G11440 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 2.3e-12 76.6 109 37.6
AT5G02210 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 1.9e-11 73.6 188 30.9
BcaB04g19402 Brassica carinata HOM05D011464 ORTHO05D014025 9.6e-11 71.2 138 37.0
BcaB08g34355 Brassica carinata HOM05D003879 ORTHO05D003858 1.1e-09 67.8 88 44.3
BcaB08g34356 Brassica carinata HOM05D003879 ORTHO05D003858 1.1e-09 67.8 88 44.3
BcaB08g34363 Brassica carinata HOM05D003879 ORTHO05D003858 1.1e-09 67.8 88 44.3
AL1G30590 Arabidopsis lyrata HOM05D014411 ORTHO05D015382 1.4e-09 67.4 125 39.2
BcaC07g39829 Brassica carinata HOM05D011464 ORTHO05D014025 2.4e-09 66.6 134 35.1
AL1G24370 Arabidopsis lyrata HOM05D011464 ORTHO05D014025 4.0e-09 65.9 199 33.2
THA.LOC104805175 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 4.0e-09 65.9 101 37.6
BcaB08g34362 Brassica carinata HOM05D003879 ORTHO05D003858 5.3e-09 65.5 82 43.9
BolC8t50653H Brassica oleracea HOM05D011464 ORTHO05D014025 5.3e-09 65.5 134 35.1
Cpa.g.sc171.23 Carica papaya HOM05D003879 ORTHO05D003858 5.3e-09 65.5 91 40.7
BcaC07g38717 Brassica carinata HOM05D003879 ORTHO05D003858 6.9e-09 65.1 87 42.5
C08p16470 Brassica napus HOM05D003879 ORTHO05D003858 6.9e-09 65.1 87 42.5
BolC8t50643H Brassica oleracea HOM05D011464 ORTHO05D014025 6.9e-09 65.1 134 35.1
BcaB08g34365 Brassica carinata HOM05D003879 ORTHO05D003858 9.0e-09 64.7 96 41.7
TPR.G34072 Trifolium pratense HOM05D003879 ORTHO05D003858 9.0e-09 64.7 209 24.9
A09p62510 Brassica napus HOM05D003879 ORTHO05D003858 2.6e-08 63.2 92 40.2
Ah.03g134780 Amaranthus hybridus HOM05D003879 ORTHO05D003858 4.5e-08 62.4 71 43.7
AL1G25920 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 4.5e-08 62.4 75 42.7
BraA09t40680Z Brassica rapa HOM05D003879 ORTHO05D003858 4.5e-08 62.4 86 44.2
BolC8t50649H Brassica oleracea HOM05D011464 ORTHO05D014025 5.8e-08 62.0 134 34.3
TAR374G1047 Trochodendron aralioides HOM05D003879 ORTHO05D003858 5.8e-08 62.0 85 42.4
Sc04g0007930 Simmondsia chinensis HOM05D003879 ORTHO05D003858 7.6e-08 61.6 72 41.7
Manes.01G033400 Manihot esculenta HOM05D003879 ORTHO05D003858 9.9e-08 61.2 79 40.5
THA.LOC104824074 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 9.9e-08 61.2 72 43.1
TWI60G0224 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 9.9e-08 61.2 88 36.4
Atru.chr11.1737 Acer truncatum HOM05D003879 ORTHO05D003858 1.3e-07 60.8 83 39.8
AT1G14060 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 1.3e-07 60.8 72 45.8
Haze_11967 Corylus avellana HOM05D000508 ORTHO05D000371 1.3e-07 60.8 70 44.3
Gohir.A11G287541 Gossypium hirsutum HOM05D003879 ORTHO05D003858 1.7e-07 60.5 86 37.2
Nn5g27527 Nelumbo nucifera HOM05D003879 ORTHO05D003858 1.7e-07 60.5 72 43.1
BcaC07g41607 Brassica carinata HOM05D003879 ORTHO05D003858 2.2e-07 60.1 103 38.8
BolC8t52157H Brassica oleracea HOM05D003879 ORTHO05D003858 2.2e-07 60.1 103 38.8
TWI73G0721 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 2.2e-07 60.1 79 39.2
Ah.02g129450 Amaranthus hybridus HOM05D003879 ORTHO05D003858 2.9e-07 59.7 74 43.2
Carub.0001s1375 Capsella rubella HOM05D003879 ORTHO05D003858 2.9e-07 59.7 74 40.5
Gohir.D11G305800 Gossypium hirsutum HOM05D003879 ORTHO05D003858 2.9e-07 59.7 86 37.2
Potri.013G099100 Populus trichocarpa HOM05D003879 ORTHO05D003858 2.9e-07 59.7 79 40.5
Sabra13G0083700 Salix brachista HOM05D003879 ORTHO05D003858 2.9e-07 59.7 78 38.5
Sabra13G0085000 Salix brachista HOM05D003879 ORTHO05D003858 2.9e-07 59.7 78 38.5
CARHR011770 Cardamine hirsuta HOM05D014411 ORTHO05D015382 3.8e-07 59.3 89 40.4
MD06G1002200 Malus domestica HOM05D003879 ORTHO05D003858 3.8e-07 59.3 84 38.1
Thecc.02G340900 Theobroma cacao HOM05D003879 ORTHO05D003858 3.8e-07 59.3 94 37.2
Cfa008939 Carpinus fangiana HOM05D003879 ORTHO05D003858 4.9e-07 58.9 65 44.6
Eucgr.B03201 Eucalyptus grandis HOM05D003879 ORTHO05D003858 4.9e-07 58.9 88 38.6
Gohir.D11G305600 Gossypium hirsutum HOM05D003879 ORTHO05D003858 4.9e-07 58.9 85 36.5
BraA09t41615Z Brassica rapa HOM05D003879 ORTHO05D003858 6.4e-07 58.5 82 40.2
Nn3g17308 Nelumbo nucifera HOM05D003879 ORTHO05D003858 6.4e-07 58.5 80 38.8
EL10Ac6g13251 Beta vulgaris HOM05D003879 ORTHO05D003858 8.4e-07 58.2 68 42.6
Thhalv10008923m.g Eutrema salsugineum HOM05D003879 ORTHO05D003858 8.4e-07 58.2 154 31.2
TAR622G1013 Trochodendron aralioides HOM05D003879 ORTHO05D003858 8.4e-07 58.2 97 37.1
C08p46070 Brassica napus HOM05D003879 ORTHO05D003858 1.1e-06 57.8 90 38.9
CiPaw.06G087900 Carya illinoinensis HOM05D003879 ORTHO05D003858 1.1e-06 57.8 86 38.4
Ciclev10033434m.g Citrus clementina HOM05D003879 ORTHO05D003858 1.1e-06 57.8 86 34.9
A09p62070 Brassica napus HOM05D011464 ORTHO05D014025 1.4e-06 57.4 106 34.9
BraA09t41571Z Brassica rapa HOM05D011464 ORTHO05D014025 1.4e-06 57.4 106 34.9
CARHR014450 Cardamine hirsuta HOM05D003879 ORTHO05D003858 1.4e-06 57.4 71 43.7
MD04G1004200 Malus domestica HOM05D003879 ORTHO05D003858 1.4e-06 57.4 72 41.7
Potri.019G081400 Populus trichocarpa HOM05D003879 ORTHO05D003858 1.4e-06 57.4 72 38.9
Sp1g12410 Schrenkiella parvula HOM05D003879 ORTHO05D003858 1.4e-06 57.4 71 43.7
Aqoxy4G02841 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 1.9e-06 57.0 83 37.3
A08p32250 Brassica napus HOM05D015260 ORTHO05D003858 1.9e-06 57.0 58 50.0
BraA08t35148Z Brassica rapa HOM05D015260 ORTHO05D003858 1.9e-06 57.0 58 50.0
CiPaw.07G072500 Carya illinoinensis HOM05D003879 ORTHO05D003858 1.9e-06 57.0 72 38.9
Gorai.007G326500 Gossypium raimondii HOM05D003879 ORTHO05D003858 1.9e-06 57.0 65 41.5
MBI07_g22385_MAGBIO Magnolia biondii HOM05D003879 ORTHO05D003858 1.9e-06 57.0 93 36.6
Manes.08G154000 Manihot esculenta HOM05D003879 ORTHO05D003858 1.9e-06 57.0 69 40.6
vmacro16344 Vaccinium macrocarpon HOM05D003879 ORTHO05D003858 1.9e-06 57.0 78 38.5
BcaB03g13115 Brassica carinata HOM05D003879 ORTHO05D003858 2.4e-06 56.6 71 42.3
CsaV3_5G033000 Cucumis sativus L. HOM05D003879 ORTHO05D003858 2.4e-06 56.6 87 34.5
FvH4_7g07760 Fragaria vesca HOM05D003879 ORTHO05D003858 2.4e-06 56.6 71 42.3
FAN01G2110 Fragaria x ananassa HOM05D003879 ORTHO05D003858 2.4e-06 56.6 71 42.3
FAN06G4142 Fragaria x ananassa HOM05D003879 ORTHO05D003858 2.4e-06 56.6 71 42.3
Sabra19G0093000 Salix brachista HOM05D003879 ORTHO05D003858 2.4e-06 56.6 72 37.5
Thecc.07G109400 Theobroma cacao HOM05D003879 ORTHO05D003858 2.4e-06 56.6 71 39.4
A08p32120 Brassica napus HOM05D003879 ORTHO05D003858 3.2e-06 56.2 71 42.3
BraA08t35135Z Brassica rapa HOM05D003879 ORTHO05D003858 3.2e-06 56.2 71 42.3
COL.COLO4_17583 Corchorus olitorius HOM05D003879 ORTHO05D003858 3.2e-06 56.2 71 40.8
Duzib251G0512 Durio zibethinus HOM05D003879 ORTHO05D003858 3.2e-06 56.2 94 37.2
FAN10G1503 Fragaria x ananassa HOM05D003879 ORTHO05D003858 3.2e-06 56.2 87 40.2
Prupe.1G004000 Prunus persica HOM05D003879 ORTHO05D003858 3.2e-06 56.2 72 40.3
PGR119G2196 Punica granatum HOM05D003879 ORTHO05D003858 3.2e-06 56.2 85 37.6
QL03p069280 Quercus lobata HOM05D003879 ORTHO05D003858 3.2e-06 56.2 83 36.1
MELO3C012121.2 Cucumis melo HOM05D003879 ORTHO05D003858 4.2e-06 55.8 87 36.8
Dinv34127 Davidia involucrata HOM05D003879 ORTHO05D003858 4.2e-06 55.8 89 36.0
Lj4g0017661 Lotus japonicus HOM05D003879 ORTHO05D003858 4.2e-06 55.8 72 40.3
Sed0022737 Sechium edule HOM05D003879 ORTHO05D003858 4.2e-06 55.8 86 34.9
unitig_21.g20857 Utricularia gibba HOM05D003879 ORTHO05D003858 4.2e-06 55.8 72 38.9
arahy.Tifrunner.gnm1.ann1.WFL4FE Arachis hypogaea HOM05D003879 ORTHO05D003858 5.4e-06 55.5 94 35.1
CARHR018730 Cardamine hirsuta HOM05D013370 ORTHO05D015382 5.4e-06 55.5 114 36.0
arahy.Tifrunner.gnm1.ann1.8KK2IT Arachis hypogaea HOM05D003879 ORTHO05D003858 7.1e-06 55.1 92 34.8
CAN.G964.6 Capsicum annuum HOM05D003879 ORTHO05D003858 7.1e-06 55.1 79 36.7
Ca_08721_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 7.1e-06 55.1 93 35.5
SGA_v2.0_scaffold455G51901 Striga asiatica HOM05D003879 ORTHO05D003858 7.1e-06 55.1 72 40.3
arahy.Tifrunner.gnm1.ann1.1F58IB Arachis hypogaea HOM05D003879 ORTHO05D003858 9.3e-06 54.7 94 34.0
BolC8t49272H Brassica oleracea HOM05D003879 ORTHO05D003858 9.3e-06 54.7 70 41.4
Glyma.20G032800 Glycine max HOM05D003879 ORTHO05D003858 9.3e-06 54.7 72 40.3
Phvul.002G169800 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 9.3e-06 54.7 76 42.1
SHI14928 Sapria himalayana HOM05D003879 ORTHO05D003858 9.3e-06 54.7 83 38.6


User provided reference genes

Program Settings