Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G36760 Arabidopsis lyrata HOM05D000278 ORTHO05D006643 2.7e-25 117.9 58 100.0
AL8G28440 Arabidopsis lyrata HOM05D000278 ORTHO05D006643 6.8e-21 103.2 53 96.2
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 4.4e-20 100.5 50 98.0
AL3G23390 Arabidopsis lyrata HOM05D000278 ORTHO05D004794 4.1e-18 94.0 50 96.0
AT3G11830 Arabidopsis thaliana HOM05D000278 ORTHO05D004794 4.1e-18 94.0 50 96.0
BcaB04g18663 Brassica carinata HOM05D000278 ORTHO05D004794 4.1e-18 94.0 50 96.0
BcaB04g21115 Brassica carinata HOM05D000278 ORTHO05D004794 4.1e-18 94.0 50 96.0
BcaB06g25572 Brassica carinata HOM05D000278 ORTHO05D004794 4.1e-18 94.0 50 96.0
BcaC05g29321 Brassica carinata HOM05D000278 ORTHO05D004794 4.1e-18 94.0 50 96.0
BcaC09g48192 Brassica carinata HOM05D000278 ORTHO05D004794 4.1e-18 94.0 50 96.0
A05p37520 Brassica napus HOM05D000278 ORTHO05D004794 4.1e-18 94.0 50 96.0
C05p56080 Brassica napus HOM05D000278 ORTHO05D004794 4.1e-18 94.0 50 96.0
BolC1t05287H Brassica oleracea HOM05D000278 ORTHO05D004794 4.1e-18 94.0 50 96.0
BolC5t34275H Brassica oleracea HOM05D000278 ORTHO05D004794 4.1e-18 94.0 50 96.0
BraA01t04158Z Brassica rapa HOM05D000278 ORTHO05D004794 4.1e-18 94.0 50 96.0
BraA05t22550Z Brassica rapa HOM05D000278 ORTHO05D004794 4.1e-18 94.0 50 96.0
Carub.0003s1118 Capsella rubella HOM05D000278 ORTHO05D004794 4.1e-18 94.0 50 96.0
CARHR086380 Cardamine hirsuta HOM05D000278 ORTHO05D004794 4.1e-18 94.0 50 96.0
Thhalv10020422m.g Eutrema salsugineum HOM05D000278 ORTHO05D004794 4.1e-18 94.0 50 96.0
Sp3g10060 Schrenkiella parvula HOM05D000278 ORTHO05D004794 4.1e-18 94.0 50 96.0
BcaC01g04077 Brassica carinata HOM05D000278 ORTHO05D004794 5.4e-18 93.6 50 94.0
A03p37310 Brassica napus HOM05D000278 ORTHO05D004794 5.4e-18 93.6 50 94.0
BraA03t12891Z Brassica rapa HOM05D000278 ORTHO05D004794 5.4e-18 93.6 50 94.0
Aa31LG5G8530 Aethionema arabicum HOM05D000278 ORTHO05D004794 1.2e-17 92.4 50 92.0
C03p45300 Brassica napus HOM05D000278 ORTHO05D004794 2.0e-17 91.7 50 92.0
BolC3t16793H Brassica oleracea HOM05D000278 ORTHO05D004794 2.0e-17 91.7 50 92.0
THA.LOC104826479 Tarenaya hassleriana HOM05D000278 ORTHO05D004794 2.7e-17 91.3 50 92.0
Migut.E01490 Erythranthe guttata HOM05D000278 ORTHO05D004794 4.6e-17 90.5 50 90.0
THA.LOC104816967 Tarenaya hassleriana HOM05D000278 ORTHO05D004794 4.6e-17 90.5 50 92.0
Ah.04g164010 Amaranthus hybridus HOM05D000278 ORTHO05D004794 7.8e-17 89.7 50 90.0
Nn6g31931 Nelumbo nucifera HOM05D000278 ORTHO05D004794 1.0e-16 89.4 50 86.0
Cc11_g01300 Coffea canephora HOM05D000278 ORTHO05D004794 1.7e-16 88.6 50 90.0
DCAR_027486 Daucus carota HOM05D000278 ORTHO05D004794 1.7e-16 88.6 50 90.0
Sc03g0004270 Simmondsia chinensis HOM05D000278 ORTHO05D004794 1.7e-16 88.6 50 88.0
HPP92_007029 Vanilla planifolia HOM05D000278 ORTHO05D004794 1.7e-16 88.6 50 90.0
HPP92_007072 Vanilla planifolia HOM05D000278 ORTHO05D004794 1.7e-16 88.6 50 90.0
Os06g0687700 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004794 2.3e-16 88.2 50 86.0
Zm00001eb207780 Zea mays HOM05D000278 ORTHO05D004794 2.3e-16 88.2 50 86.0
arahy.Tifrunner.gnm1.ann1.H62ZJF Arachis hypogaea HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
MSTRG.11745 Avicennia marina HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
CSS0017916 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
CANSAT35G1978 Cannabis sativa HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
ClCG03G014240 Citrullus lanatus HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
COL.COLO4_14011 Corchorus olitorius HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Haze_23638 Corylus avellana HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
MELO3C015615.2 Cucumis melo HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
CsaV3_1G041990 Cucumis sativus L. HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
DCAR_023796 Daucus carota HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Dinv32841 Davidia involucrata HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Duzib187G1092 Durio zibethinus HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Eucgr.J00618 Eucalyptus grandis HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Glyma.02G273200 Glycine max HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Glyma.14G043400 Glycine max HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Gohir.A11G230300 Gossypium hirsutum HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Gohir.A12G001300 Gossypium hirsutum HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Gohir.D11G229500 Gossypium hirsutum HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Gohir.D12G001100 Gossypium hirsutum HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Gorai.003G068300 Gossypium raimondii HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Gorai.008G000400 Gossypium raimondii HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Lj2A907T33 Lonicera japonica HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
LjContig00564g0022207 Lotus japonicus HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Lalb_Chr04g0249751 Lupinus albus HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Lalb_Chr10g0105841 Lupinus albus HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
MBI08_g21308_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Medtr5g087560 Medicago truncatula HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
PSO541G3784 Papaver somniferum HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
PSO675G7679 Papaver somniferum HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Psat0s921g0240 Pisum sativum HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Potri.004G195300 Populus trichocarpa HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Potri.009G157400 Populus trichocarpa HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
QL01p020501 Quercus lobata HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Rhsim05G0064500 Rhododendron simsii HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Sabra04G0132500 Salix brachista HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Sabra09G0123000 Salix brachista HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
SalBow8G4259 Salvia bowleyana HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
SalBow8G4293 Salvia bowleyana HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Sed0013756 Sechium edule HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Sed0019588 Sechium edule HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
SEGI_21483 Sequoiadendron giganteum HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
SGA_v2.0_scaffold169G38626 Striga asiatica HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
SGA_v2.0_scaffold4G02195 Striga asiatica HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Thecc.01G126500 Theobroma cacao HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
TWI31G0144 Tripterygium wilfordii HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
unitig_26.g9787 Utricularia gibba HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
vmacro08485 Vaccinium macrocarpon HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
VMungo0647G0629 Vigna mungo HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
GSVIVG01002278001 Vitis vinifera HOM05D000278 ORTHO05D004794 3.9e-16 87.4 50 88.0
Atru.chr3.2916 Acer truncatum HOM05D000278 ORTHO05D004794 5.0e-16 87.0 50 88.0
Peaxi162Scf00038g02039 Petunia axillaris HOM05D000278 ORTHO05D004794 5.0e-16 87.0 50 86.0
Peaxi162Scf00275g00008 Petunia axillaris HOM05D000278 ORTHO05D004794 5.0e-16 87.0 50 86.0
CAN.G199.51 Capsicum annuum HOM05D000278 ORTHO05D004794 6.6e-16 86.7 50 86.0
CiPaw.14G092200 Carya illinoinensis HOM05D000278 ORTHO05D004794 6.6e-16 86.7 50 86.0
AUR62013959 Chenopodium quinoa HOM05D000278 ORTHO05D004794 6.6e-16 86.7 50 88.0
AUR62019654 Chenopodium quinoa HOM05D000278 ORTHO05D004794 6.6e-16 86.7 50 88.0
Manes.11G109600 Manihot esculenta HOM05D000278 ORTHO05D004794 6.6e-16 86.7 50 86.0
Mapoly0156s0015 Marchantia polymorpha HOM05D000278 ORTHO05D004794 6.6e-16 86.7 50 88.0
Actinidia06356 Actinidia chinensis HOM05D000278 ORTHO05D004794 8.6e-16 86.3 50 86.0
Actinidia22468 Actinidia chinensis HOM05D000278 ORTHO05D004794 8.6e-16 86.3 50 86.0
ATR0099G017 Amborella trichopoda HOM05D000278 ORTHO05D004794 8.6e-16 86.3 50 86.0
ATR0661G304 Amborella trichopoda HOM05D000278 ORTHO05D004794 8.6e-16 86.3 50 86.0
EL10Ac4g08419 Beta vulgaris HOM05D000278 ORTHO05D004794 8.6e-16 86.3 50 86.0
CSS0003568 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004794 8.6e-16 86.3 50 86.0
Solyc06g065520.3 Solanum lycopersicum HOM05D000278 ORTHO05D004794 8.6e-16 86.3 50 86.0
Sopen06g024160 Solanum pennellii HOM05D000278 ORTHO05D004794 8.6e-16 86.3 50 86.0
PGSC0003DMG400026124 Solanum tuberosum HOM05D000278 ORTHO05D004794 8.6e-16 86.3 50 86.0
TAR625G0442 Trochodendron aralioides HOM05D000278 ORTHO05D004794 8.6e-16 86.3 50 86.0
unitig_749.g13821 Utricularia gibba HOM05D000278 ORTHO05D004794 8.6e-16 86.3 50 86.0
Aqoxy6G02051 Aquilegia oxysepala HOM05D000278 ORTHO05D004794 1.1e-15 85.9 50 86.0
Hma1.2p1_1466F.1_g285420 Hydrangea macrophylla HOM05D000278 ORTHO05D004794 1.1e-15 85.9 50 86.0
Phvul.008G208800 Phaseolus vulgaris HOM05D000278 ORTHO05D004794 1.1e-15 85.9 50 86.0
PGR119G0569 Punica granatum HOM05D000278 ORTHO05D004794 1.1e-15 85.9 50 86.0
CBR_g42151 Chara braunii HOM05D000278 ORTHO05D004794 1.9e-15 85.1 50 82.0
Duzib147G1120 Durio zibethinus HOM05D000278 ORTHO05D004794 1.9e-15 85.1 50 86.0
Migut.A00285 Erythranthe guttata HOM05D000278 ORTHO05D004794 1.9e-15 85.1 50 84.0
Nitab4.5_0003976g0060 Nicotiana tabacum HOM05D000278 ORTHO05D004794 1.9e-15 85.1 50 84.0
Nitab4.5_0005873g0040 Nicotiana tabacum HOM05D000278 ORTHO05D004794 1.9e-15 85.1 50 84.0
Pp3c15_8230 Physcomitrium patens HOM05D000278 ORTHO05D004794 2.5e-15 84.7 50 84.0
Pp3c9_14010 Physcomitrium patens HOM05D000278 ORTHO05D004794 2.5e-15 84.7 50 84.0
Cpa.g.sc103.86 Carica papaya HOM05D000278 ORTHO05D004794 3.3e-15 84.3 50 82.0
Duzib264G0906 Durio zibethinus HOM05D000278 ORTHO05D004794 3.3e-15 84.3 50 86.0
Dinv32114 Davidia involucrata HOM05D000278 ORTHO05D004794 4.3e-15 84.0 50 86.0
Hund02336 Selenicereus undatus HOM05D000278 ORTHO05D004794 5.6e-15 83.6 50 84.0
CDE02G3738 Ceratophyllum demersum HOM05D000278 ORTHO05D004794 7.3e-15 83.2 50 82.0
CDE06G0515 Ceratophyllum demersum HOM05D000278 ORTHO05D004794 7.3e-15 83.2 50 82.0
TAR381G1107 Trochodendron aralioides HOM05D000278 ORTHO05D004794 7.3e-15 83.2 50 82.0
Ciclev10014771m.g Citrus clementina HOM05D000278 ORTHO05D004794 9.5e-15 82.8 50 86.0
TWI75G0864 Tripterygium wilfordii HOM05D000278 ORTHO05D004794 9.5e-15 82.8 50 84.0
SMO347G0357 Selaginella moellendorffii HOM05D000278 ORTHO05D004794 2.1e-14 81.6 50 80.0
ATR0638G001 Amborella trichopoda HOM05D000278 ORTHO05D004794 2.8e-14 81.3 50 82.0
AagrBONN_evm.TU.Sc2ySwM_117.2607 Anthoceros agrestis HOM05D000278 ORTHO05D004794 2.8e-14 81.3 50 82.0
Lsat_1_v5_gn_5_64940 Lactuca sativa HOM05D000278 ORTHO05D004794 2.8e-14 81.3 50 82.0
SHI25343 Sapria himalayana HOM05D000278 ORTHO05D004794 2.8e-14 81.3 50 80.0
HanXRQChr12g0378161 Helianthus annuus HOM05D000278 ORTHO05D004794 3.6e-14 80.9 50 82.0
ATR0099G056 Amborella trichopoda HOM05D000278 ORTHO05D004794 6.2e-14 80.1 50 82.0
RcHm_v2.0_Chr2g0128841 Rosa chinensis HOM05D000278 ORTHO05D004794 6.2e-14 80.1 50 80.0
RcHm_v2.0_Chr5g0049871 Rosa chinensis HOM05D000278 ORTHO05D004794 6.2e-14 80.1 50 80.0
ATR0099G014 Amborella trichopoda HOM05D000278 ORTHO05D004794 8.1e-14 79.7 50 80.0
ECA238G3358 Erigeron canadensis HOM05D000278 ORTHO05D004794 8.1e-14 79.7 50 80.0
HanXRQChr15g0468701 Helianthus annuus HOM05D000278 ORTHO05D004794 8.1e-14 79.7 50 80.0
FvH4_3g27240 Fragaria vesca HOM05D000278 ORTHO05D004794 1.1e-13 79.3 50 78.0
FAN11G3227 Fragaria x ananassa HOM05D000278 ORTHO05D004794 1.1e-13 79.3 50 78.0
FAN16G1090 Fragaria x ananassa HOM05D000278 ORTHO05D004794 1.1e-13 79.3 50 78.0
FAN16G3564 Fragaria x ananassa HOM05D000278 ORTHO05D004794 1.1e-13 79.3 50 78.0
FAN25G3467 Fragaria x ananassa HOM05D000278 ORTHO05D004794 1.1e-13 79.3 50 78.0
ATR0099G041 Amborella trichopoda HOM05D000278 ORTHO05D004794 2.3e-13 78.2 50 78.0
ATR0408G001 Amborella trichopoda HOM05D000278 ORTHO05D004794 2.3e-13 78.2 50 78.0
Prupe.6G154400 Prunus persica HOM05D000278 ORTHO05D004794 5.2e-13 77.0 50 80.0
MD03G1164100 Malus domestica HOM05D000278 ORTHO05D004794 8.9e-13 76.3 50 78.0
MCO06G165 Micromonas commoda HOM05D000278 ORTHO05D004794 5.8e-12 73.6 49 69.4
PRCOL_00005497 Prasinoderma coloniale HOM05D000278 ORTHO05D004794 8.3e-11 69.7 49 69.4
ATR1195G001 Amborella trichopoda HOM05D000278 ORTHO05D004794 5.4e-10 67.0 35 91.4
Cre01.g026550 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D004794 9.2e-10 66.2 50 62.0
Aa31sc2712G10 Aethionema arabicum HOM05D000278 ORTHO05D004794 1.5e-07 58.9 30 96.7
TPR.G11653 Trifolium pratense HOM05D000278 ORTHO05D004794 2.5e-07 58.2 37 78.4


User provided reference genes

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