Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 4.4e-138 494.6 246 100.0
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 2.4e-131 472.2 250 95.6
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 2.9e-129 465.3 250 93.6
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 6.0e-127 457.6 251 91.2
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 4.0e-123 444.9 250 90.0
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.5e-122 443.0 250 89.2
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 1.3e-118 429.9 250 86.8
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 2.3e-118 429.1 261 84.3
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 2.1e-116 422.5 273 81.0
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 2.1e-116 422.5 273 81.0
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 3.7e-116 421.8 242 88.4
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 4.8e-116 421.4 242 88.0
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 4.8e-116 421.4 242 88.0
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 4.5e-114 414.8 246 82.9
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 1.0e-113 413.7 246 82.5
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 1.0e-113 413.7 246 82.5
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 1.7e-113 412.9 246 82.5
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 2.2e-113 412.5 246 82.1
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 3.8e-113 411.8 246 82.5
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 6.5e-113 411.0 246 82.5
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 7.2e-112 407.5 246 82.1
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 7.2e-112 407.5 246 82.1
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.2e-111 406.8 246 81.7
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 2.1e-111 406.0 246 82.1
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 4.6e-111 404.8 246 79.7
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 3.7e-108 395.2 251 76.9
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 7.9e-103 377.5 245 74.3
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 1.3e-100 370.2 241 73.9
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 1.3e-100 370.2 241 74.7
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 3.7e-100 368.6 289 67.1
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 4.8e-100 368.2 239 72.4
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 8.2e-100 367.5 239 74.1
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 8.2e-100 367.5 246 71.1
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 1.1e-99 367.1 241 75.5
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 1.1e-99 367.1 240 75.0
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 2.4e-99 365.9 251 72.1
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 6.9e-99 364.4 238 74.8
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 9.1e-99 364.0 251 72.9
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 9.1e-99 364.0 251 72.5
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 1.2e-98 363.6 242 71.5
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 1.5e-98 363.2 241 72.6
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 3.4e-98 362.1 242 72.7
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 4.5e-98 361.7 241 73.0
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 5.9e-98 361.3 250 70.4
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.0e-97 360.5 241 72.6
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 1.0e-97 360.5 239 71.5
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.3e-97 360.1 241 72.2
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 1.3e-97 360.1 240 73.8
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 1.3e-97 360.1 242 72.7
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.7e-97 359.8 245 71.0
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 2.2e-97 359.4 250 71.2
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 2.2e-97 359.4 249 70.7
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 2.9e-97 359.0 241 72.6
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 3.8e-97 358.6 240 70.4
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 3.8e-97 358.6 239 72.8
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 5.0e-97 358.2 250 70.8
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 5.0e-97 358.2 245 71.4
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 6.5e-97 357.8 240 71.7
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 8.5e-97 357.5 239 72.4
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 1.1e-96 357.1 250 69.2
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 1.4e-96 356.7 239 71.5
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 1.4e-96 356.7 250 68.4
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 1.9e-96 356.3 239 71.1
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 3.2e-96 355.5 242 71.5
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 3.2e-96 355.5 242 70.2
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 4.2e-96 355.1 249 68.3
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 7.2e-96 354.4 250 68.4
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 9.4e-96 354.0 243 70.8
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 1.2e-95 353.6 250 70.0
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 1.6e-95 353.2 241 69.3
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 1.6e-95 353.2 249 69.5
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.1e-95 352.8 240 70.8
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.1e-95 352.8 240 70.8
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 2.1e-95 352.8 251 70.5
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 2.1e-95 352.8 250 67.6
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.7e-95 352.4 240 72.5
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 2.7e-95 352.4 250 68.8
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 3.6e-95 352.1 244 70.9
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 4.7e-95 351.7 250 68.0
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 4.7e-95 351.7 240 72.5
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.0e-94 350.5 240 70.4
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.8e-94 349.7 243 69.1
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 1.8e-94 349.7 239 72.0
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.8e-94 349.7 239 72.0
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.3e-94 349.4 243 69.1
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 3.9e-94 348.6 240 72.1
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 3.9e-94 348.6 237 72.2
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 6.7e-94 347.8 238 71.4
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.6e-93 345.9 239 71.1
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 3.3e-93 345.5 237 68.8
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 5.7e-93 344.7 243 69.5
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.3e-92 343.6 252 66.7
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.3e-92 343.6 239 70.7
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 1.3e-92 343.6 245 68.2
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.3e-92 343.6 239 69.0
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.7e-92 343.2 239 70.7
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 3.7e-92 342.0 243 67.9
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 6.3e-92 341.3 253 66.4
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 4.1e-91 338.6 237 69.2
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 7.0e-91 337.8 245 68.6
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 9.1e-91 337.4 237 69.2
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 2.6e-90 335.9 242 68.2
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 3.5e-90 335.5 239 68.2
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 5.9e-90 334.7 246 67.9
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 1.0e-89 334.0 242 66.1
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 1.3e-89 333.6 251 65.3
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 2.9e-89 332.4 251 65.3
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 3.8e-89 332.0 250 64.0
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 6.5e-89 331.3 257 66.9
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 8.5e-89 330.9 251 64.9
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 8.5e-89 330.9 245 64.1
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 1.1e-88 330.5 242 66.5
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 5.5e-88 328.2 246 66.3
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 7.2e-88 327.8 243 66.3
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.2e-87 327.0 295 57.6
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 5.2e-86 321.6 201 77.6
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.1e-85 320.5 241 65.6
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 3.3e-85 318.9 240 66.2
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 2.8e-84 315.8 246 65.0
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 6.3e-84 314.7 259 61.4
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.1e-83 313.9 243 64.2
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 1.2e-82 310.5 184 79.3
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.2e-82 310.5 226 67.7
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.2e-81 306.2 245 62.9
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 2.7e-79 299.3 174 81.6
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 2.6e-77 292.7 175 77.1
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 2.6e-77 292.7 243 62.6
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 4.1e-75 285.4 242 60.3
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 2.7e-71 272.7 238 59.7
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 3.6e-71 272.3 244 59.8
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 5.2e-70 268.5 153 80.4
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 3.7e-68 262.3 147 84.4
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 3.7e-68 262.3 147 84.4
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 3.0e-62 242.7 174 70.1
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 3.4e-61 239.2 229 49.8
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.7e-60 236.9 176 67.6
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 1.6e-58 230.3 180 59.4
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 8.0e-55 218.0 190 62.1
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 8.0e-55 218.0 190 62.1
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 5.2e-54 215.3 175 61.7
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 1.1e-48 197.6 179 57.0
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 2.9e-44 183.0 110 76.4
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 4.1e-43 179.1 216 42.6
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.2e-39 167.5 88 90.9
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 3.8e-36 156.0 175 48.6
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 9.3e-27 124.8 84 73.8
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 2.1e-26 123.6 63 85.7
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 1.0e-25 121.3 73 78.1
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.3e-25 120.9 174 35.6
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 2.5e-24 116.7 99 61.6
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 2.5e-24 116.7 99 61.6
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 1.1e-22 111.3 108 60.2
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 1.4e-22 110.9 75 76.0
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 2.6e-21 106.7 168 35.1
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 2.8e-15 86.7 94 56.4
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 9.0e-14 81.6 83 55.4
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.4e-11 74.3 182 30.8
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 1.3e-09 67.8 52 59.6
BcaC05g26219 Brassica carinata HOM05D004292 ORTHO05D005206 1.9e-08 63.9 34 85.3
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 2.5e-08 63.5 167 29.9
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 2.1e-07 60.5 47 63.8
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 4.8e-07 59.3 54 57.4
PRCOL_00001474 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 3.1e-06 56.6 203 27.1


User provided reference genes

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