Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 8.4e-213 743.4 376 100.0
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 2.8e-152 542.3 347 81.3
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 3.7e-120 435.6 342 68.4
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 9.2e-119 431.0 356 65.7
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 7.3e-116 421.4 357 63.9
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 6.2e-115 418.3 341 66.6
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 3.4e-113 412.5 343 66.2
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 4.9e-112 408.7 345 64.9
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 8.4e-112 407.9 333 66.1
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 5.4e-111 405.2 336 65.2
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 2.5e-108 396.4 368 58.4
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 3.3e-108 396.0 341 63.3
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 8.1e-107 391.3 342 63.7
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 1.9e-103 380.2 341 61.3
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 1.2e-102 377.5 341 61.0
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.1e-90 337.8 346 55.8
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 1.8e-90 337.0 338 56.8
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 1.5e-89 334.0 350 55.1
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 5.5e-87 325.5 345 53.6
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 1.2e-86 324.3 343 54.2
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 2.8e-83 313.2 356 50.6
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 7.6e-81 305.1 298 56.7
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 1.1e-79 301.2 297 55.9
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 6.1e-78 295.4 382 46.1
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 4.1e-74 282.7 350 46.6
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 1.4e-71 274.2 338 48.5
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 4.2e-71 272.7 333 48.3
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 9.4e-71 271.6 348 44.3
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 1.6e-70 270.8 348 44.5
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 4.6e-70 269.2 348 44.0
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 4.6e-70 269.2 340 45.9
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 7.9e-70 268.5 348 44.0
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 5.1e-69 265.8 347 45.0
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 8.8e-69 265.0 345 42.3
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 1.1e-68 264.6 344 44.5
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 7.4e-68 261.9 348 43.4
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 1.3e-67 261.2 348 43.4
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 1.7e-67 260.8 344 43.0
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 2.8e-67 260.0 347 42.9
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 4.8e-67 259.2 344 43.3
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 4.8e-67 259.2 338 44.1
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 1.1e-66 258.1 342 43.9
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 1.4e-66 257.7 342 43.3
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 1.4e-66 257.7 342 43.3
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.8e-66 257.3 342 43.3
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.8e-66 257.3 342 43.3
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 3.1e-66 256.5 345 43.5
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 3.1e-66 256.5 342 43.6
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 4.1e-66 256.1 352 43.2
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 4.1e-66 256.1 342 43.6
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 4.1e-66 256.1 345 42.0
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 5.3e-66 255.8 342 43.6
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 6.9e-66 255.4 347 42.4
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 9.1e-66 255.0 345 42.9
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 1.2e-65 254.6 347 43.8
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 1.2e-65 254.6 346 43.6
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 1.2e-65 254.6 347 42.7
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 3.4e-65 253.1 339 42.5
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 4.5e-65 252.7 349 42.7
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 5.9e-65 252.3 346 43.4
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 5.9e-65 252.3 341 43.4
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 1.3e-64 251.1 348 42.2
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 1.3e-64 251.1 351 42.7
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 1.7e-64 250.8 348 43.7
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 1.7e-64 250.8 345 42.6
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 2.2e-64 250.4 345 41.7
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 2.2e-64 250.4 345 42.6
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 6.5e-64 248.8 346 42.2
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 8.5e-64 248.4 333 42.3
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 1.1e-63 248.1 348 40.2
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 1.1e-63 248.1 349 42.7
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 1.4e-63 247.7 348 42.2
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 2.5e-63 246.9 333 43.2
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 7.2e-63 245.4 347 42.1
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 1.6e-62 244.2 258 55.4
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 2.7e-62 243.4 344 43.0
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 3.6e-62 243.0 347 41.8
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 2.3e-61 240.4 325 43.4
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 8.8e-61 238.4 366 39.3
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 1.5e-60 237.7 215 62.3
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 1.5e-60 237.7 309 44.0
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 2.0e-60 237.3 340 41.2
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 2.0e-60 237.3 348 40.5
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 4.4e-60 236.1 319 43.9
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 1.3e-59 234.6 342 41.2
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 1.7e-59 234.2 390 36.2
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 8.2e-59 231.9 361 38.2
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 1.4e-58 231.1 347 40.1
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 4.1e-58 229.6 363 39.4
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 3.5e-57 226.5 347 40.3
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 5.9e-57 225.7 345 40.0
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 1.0e-56 224.9 354 40.7
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 1.0e-56 224.9 346 40.2
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 1.7e-56 224.2 290 43.8
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 3.8e-56 223.0 426 35.0
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 5.0e-56 222.6 347 39.8
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 1.5e-55 221.1 323 40.6
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 3.2e-55 219.9 348 38.5
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 1.6e-54 217.6 301 41.5
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 8.0e-54 215.3 343 38.5
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 1.0e-53 214.9 338 38.8
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 2.3e-53 213.8 268 44.0
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 4.0e-53 213.0 342 38.0
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 6.7e-53 212.2 347 39.2
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 2.6e-52 210.3 268 46.3
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 3.3e-52 209.9 275 43.6
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 5.7e-52 209.1 387 35.9
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 1.7e-51 207.6 350 37.7
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 3.7e-51 206.5 350 37.7
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 3.1e-50 203.4 344 36.6
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 9.1e-50 201.8 289 41.2
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 1.3e-48 198.0 352 35.8
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 5.0e-48 196.1 336 36.6
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 1.1e-47 194.9 356 34.3
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 4.2e-47 193.0 366 32.8
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 5.5e-47 192.6 330 37.3
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 2.7e-46 190.3 333 37.2
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 1.7e-43 181.0 323 34.1
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 2.6e-36 157.1 321 31.2
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 6.3e-35 152.5 223 40.4
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 2.3e-32 144.1 335 32.5
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 2.9e-32 143.7 301 33.9
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 1.9e-31 141.0 124 59.7
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 2.5e-31 140.6 273 35.2
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 8.0e-30 135.6 226 37.2
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 2.6e-28 130.6 208 39.9
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 4.4e-28 129.8 218 38.5
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 5.9e-25 119.4 172 42.4
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 1.9e-23 114.4 198 31.3
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 1.6e-22 111.3 220 35.5
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 6.8e-21 105.9 299 29.4
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 2.0e-20 104.4 316 25.9
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 1.3e-19 101.7 118 47.5
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 8.6e-16 89.0 157 33.1
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 1.6e-09 68.2 143 36.4
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 5.1e-08 63.2 189 28.0


User provided reference genes

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