Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 3.8e-199 698.0 356 100.0
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 2.5e-182 642.1 358 92.7
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 3.9e-175 618.2 357 90.2
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 2.3e-167 592.4 361 85.9
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 1.8e-164 582.8 357 85.2
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 9.2e-161 570.5 359 83.3
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 1.0e-159 567.0 356 82.3
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 4.0e-156 555.1 357 82.9
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 8.9e-156 553.9 359 80.8
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 9.9e-155 550.4 358 80.7
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 8.4e-154 547.4 367 76.8
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 1.0e-151 540.4 359 78.6
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 6.6e-151 537.7 359 78.3
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 3.7e-133 478.8 359 69.9
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 1.7e-130 469.9 363 69.1
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 4.9e-130 468.4 355 69.6
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 6.2e-125 451.4 358 65.6
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 2.4e-124 449.5 359 65.7
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 4.5e-123 445.3 357 65.5
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 6.7e-119 431.4 356 65.7
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 1.4e-116 423.7 356 64.9
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 1.3e-114 417.2 298 71.5
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 1.7e-114 416.8 312 68.9
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 3.6e-112 409.1 352 60.5
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 3.3e-110 402.5 347 63.1
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 3.7e-109 399.1 342 62.9
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 1.8e-108 396.7 366 57.1
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 1.5e-107 393.7 368 56.8
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 2.2e-106 389.8 366 56.6
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 3.2e-105 386.0 358 55.3
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 9.4e-105 384.4 366 56.0
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 1.2e-104 384.0 366 55.7
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 1.0e-103 380.9 363 55.4
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 1.8e-103 380.2 366 55.5
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 3.0e-103 379.4 367 54.8
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 5.1e-103 378.6 362 55.2
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 1.5e-102 377.1 366 54.1
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 5.7e-102 375.2 365 55.9
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 1.3e-101 374.0 366 54.4
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 2.8e-101 372.9 363 53.2
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 3.7e-101 372.5 365 53.7
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 4.8e-101 372.1 360 54.2
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 6.3e-101 371.7 360 54.2
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 6.3e-101 371.7 360 54.2
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 1.1e-100 370.9 363 54.3
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 1.4e-100 370.5 363 54.5
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.8e-100 370.2 360 54.2
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 2.4e-100 369.8 362 54.1
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 3.1e-100 369.4 369 52.6
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 3.1e-100 369.4 369 52.6
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 4.1e-100 369.0 360 53.9
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 4.1e-100 369.0 358 55.0
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 5.3e-100 368.6 363 54.5
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 1.2e-99 367.5 359 53.8
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 1.2e-99 367.5 358 54.7
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.6e-99 366.3 360 54.2
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 3.5e-99 365.9 366 53.6
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 1.0e-98 364.4 367 54.0
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 1.3e-98 364.0 364 52.7
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 3.8e-98 362.5 360 54.4
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 6.5e-98 361.7 361 52.6
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 4.2e-97 359.0 366 51.6
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 5.5e-97 358.6 366 54.1
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 7.2e-97 358.2 365 52.9
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 7.2e-97 358.2 364 52.5
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 1.6e-96 357.1 355 53.2
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 2.1e-96 356.7 360 53.9
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 3.6e-96 355.9 355 53.2
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 3.6e-96 355.9 370 52.4
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 4.7e-96 355.5 358 52.5
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 4.7e-96 355.5 369 52.3
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 4.7e-96 355.5 360 54.2
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 2.3e-95 353.2 364 52.7
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 6.7e-95 351.7 367 52.9
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 8.8e-95 351.3 343 54.2
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 2.0e-94 350.1 360 51.9
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 4.4e-94 349.0 364 52.5
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 5.7e-94 348.6 355 54.1
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 2.2e-93 346.7 405 46.9
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 1.8e-92 343.6 350 51.7
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 5.3e-92 342.0 364 51.1
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 7.0e-92 341.7 346 53.8
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 9.1e-92 341.3 233 79.0
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 3.5e-91 339.3 352 51.1
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 2.2e-90 336.7 271 68.6
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 2.9e-90 336.3 365 50.7
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 5.0e-90 335.5 366 51.1
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 5.0e-90 335.5 324 55.2
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 3.2e-89 332.8 364 50.3
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 2.7e-88 329.7 428 44.9
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 3.6e-88 329.3 356 51.1
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 4.7e-88 328.9 367 47.7
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 2.3e-87 326.6 403 46.9
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 2.0e-86 323.6 386 46.4
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 3.4e-86 322.8 366 48.4
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 4.4e-86 322.4 368 47.6
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 2.2e-85 320.1 364 49.2
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 4.8e-85 318.9 342 50.6
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 4.8e-85 318.9 356 48.0
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 1.8e-84 317.0 363 46.8
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 1.6e-83 313.9 364 48.6
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 1.6e-83 313.9 372 47.3
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 2.7e-83 313.2 346 49.7
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 7.7e-83 311.6 305 54.8
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 2.1e-80 303.5 358 47.8
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 2.7e-80 303.1 284 57.4
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 8.0e-80 301.6 370 47.0
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 5.2e-79 298.9 371 47.2
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 2.6e-78 296.6 303 52.8
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 7.5e-78 295.0 310 52.9
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 1.3e-77 294.3 296 54.7
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 1.7e-77 293.9 355 45.4
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 8.3e-77 291.6 331 48.9
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 7.0e-76 288.5 371 44.2
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 2.3e-74 283.5 297 51.5
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 3.6e-72 276.2 360 41.7
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 2.6e-70 270.0 344 43.3
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 4.1e-68 262.7 367 40.6
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 1.1e-60 238.0 240 53.3
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 1.5e-57 227.6 351 39.3
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 3.4e-54 216.5 245 49.0
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 1.2e-51 208.0 239 50.6
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 3.9e-50 203.0 234 49.1
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 1.1e-49 201.4 323 39.0
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 6.2e-48 195.7 181 59.7
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 1.8e-47 194.1 274 44.2
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 5.2e-47 192.6 340 36.8
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 4.1e-44 183.0 124 73.4
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 1.1e-41 174.9 239 47.3
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 6.2e-40 169.1 351 31.1
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 5.8e-38 162.5 299 35.8
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 4.9e-37 159.5 420 27.1
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 4.8e-24 116.3 126 46.0
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 1.4e-23 114.8 371 26.7
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 2.4e-23 114.0 171 43.9
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 4.0e-23 113.2 245 31.4
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 4.2e-12 76.6 237 27.8
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 1.1e-07 62.0 147 28.6
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 3.4e-06 57.0 55 43.6
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 5.9e-06 56.2 56 44.6
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 7.6e-06 55.8 56 44.6


User provided reference genes

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