Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G36520 Arabidopsis lyrata HOM05D007426 ORTHO05D009167 3.1e-131 473.4 547 100.0
AT1G22960 Arabidopsis thaliana HOM05D007426 ORTHO05D009167 2.1e-119 434.1 549 95.3
Carub.0001s2246 Capsella rubella HOM05D007426 ORTHO05D009167 2.3e-110 404.1 550 89.1
CARHR023340 Cardamine hirsuta HOM05D007426 ORTHO05D009167 6.3e-108 396.0 548 88.5
Thhalv10006897m.g Eutrema salsugineum HOM05D007426 ORTHO05D009167 1.6e-82 311.6 582 69.2
Sp1g20420 Schrenkiella parvula HOM05D007426 ORTHO05D009167 1.7e-73 281.6 216 73.6
BraA09t39664Z Brassica rapa HOM05D007426 ORTHO05D009167 6.0e-66 256.5 554 70.4
BolC5t30917H Brassica oleracea HOM05D007426 ORTHO05D009167 7.8e-66 256.1 582 68.4
BcaC05g26208 Brassica carinata HOM05D007426 ORTHO05D009167 1.7e-65 255.0 582 68.2
C05p22170 Brassica napus HOM05D007426 ORTHO05D009167 6.6e-65 253.1 582 68.2
Aa31LG7G6970 Aethionema arabicum HOM05D007426 ORTHO05D009167 1.6e-63 248.4 217 66.8
A09p41750 Brassica napus HOM05D007426 ORTHO05D009167 2.6e-61 241.1 582 67.4
A01p19900 Brassica napus HOM05D007426 ORTHO05D009167 1.7e-60 238.4 207 70.0
BcaB07g32294 Brassica carinata HOM05D007426 ORTHO05D009167 6.4e-60 236.5 220 68.6
THA.LOC104821759 Tarenaya hassleriana HOM05D007426 ORTHO05D009167 1.6e-55 221.9 218 60.1
Cpa.g.sc65.89 Carica papaya HOM05D007426 ORTHO05D009167 7.1e-43 179.9 217 49.3
TAR629G2850 Trochodendron aralioides HOM05D007426 ORTHO05D009167 1.0e-41 176.0 213 46.9
QL01p003061 Quercus lobata HOM05D007426 ORTHO05D009167 1.3e-41 175.6 218 46.3
MELO3C012287.2 Cucumis melo HOM05D007426 ORTHO05D009167 1.7e-41 175.3 218 45.9
CiPaw.05G245100 Carya illinoinensis HOM05D007426 ORTHO05D009167 1.9e-40 171.8 212 49.1
ClCG04G001050 Citrullus lanatus HOM05D007426 ORTHO05D009167 1.9e-40 171.8 219 46.1
Manes.06G063200 Manihot esculenta HOM05D007426 ORTHO05D009167 2.8e-39 167.9 216 46.8
Ciclev10017504m.g Citrus clementina HOM05D007426 ORTHO05D009167 6.2e-39 166.8 223 43.9
CsaV3_5G034750 Cucumis sativus L. HOM05D007426 ORTHO05D009167 6.9e-38 163.3 218 43.6
BcaB03g11918 Brassica carinata HOM05D007426 ORTHO05D009167 3.4e-37 161.0 547 56.5
MD13G1032800 Malus domestica HOM05D007426 ORTHO05D009167 5.8e-37 160.2 220 45.5
Dinv04907 Davidia involucrata HOM05D007426 ORTHO05D009167 9.9e-37 159.5 168 51.2
GSVIVG01011807001 Vitis vinifera HOM05D000798 ORTHO05D000659 9.9e-37 159.5 216 44.0
Sed0007337 Sechium edule HOM05D007426 ORTHO05D009167 1.7e-36 158.7 212 43.4
Haze_00680 Corylus avellana HOM05D007426 ORTHO05D009167 2.2e-36 158.3 205 46.3
Duzib248G0356 Durio zibethinus HOM05D007426 ORTHO05D009167 2.2e-36 158.3 218 44.5
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 4.9e-36 157.1 226 41.6
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 6.4e-36 156.8 184 47.3
Aqoxy3G03989 Aquilegia oxysepala HOM05D007426 ORTHO05D009167 8.4e-36 156.4 190 43.7
MD16G1034800 Malus domestica HOM05D007426 ORTHO05D009167 1.4e-35 155.6 220 42.7
Atru.chr11.331 Acer truncatum HOM05D007426 ORTHO05D009167 3.2e-35 154.5 217 43.3
Nn3g17999 Nelumbo nucifera HOM05D007426 ORTHO05D009167 4.2e-35 154.1 216 42.1
CANSAT01G1275 Cannabis sativa HOM05D007426 ORTHO05D009167 1.2e-34 152.5 186 46.8
Eucgr.G00774 Eucalyptus grandis HOM05D007426 ORTHO05D009167 1.3e-33 149.1 192 44.8
TWI79G0655 Tripterygium wilfordii HOM05D007426 ORTHO05D009167 3.0e-33 147.9 207 44.4
Gohir.D02G172600 Gossypium hirsutum HOM05D007426 ORTHO05D009167 5.1e-33 147.1 230 42.6
Gohir.A03G149700 Gossypium hirsutum HOM05D007426 ORTHO05D009167 8.7e-33 146.4 230 42.6
RcHm_v2.0_Chr4g0434041 Rosa chinensis HOM05D007426 ORTHO05D009167 8.7e-33 146.4 219 41.6
Gorai.005G194300 Gossypium raimondii HOM05D007426 ORTHO05D009167 1.1e-32 146.0 229 42.4
Hma1.2p1_0882F.1_g232200 Hydrangea macrophylla HOM05D007426 ORTHO05D009167 3.3e-32 144.4 224 41.5
PGR119G0474 Punica granatum HOM05D007426 ORTHO05D009167 3.3e-32 144.4 215 41.9
Lj3A877T95 Lonicera japonica HOM05D007426 ORTHO05D009167 1.3e-31 142.5 176 46.0
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 3.6e-31 141.0 134 48.5
Sc11g0003960 Simmondsia chinensis HOM05D007426 ORTHO05D009167 6.2e-31 140.2 141 48.9
Ca_12586_v3 Cicer arietinum L. HOM05D007426 ORTHO05D009167 1.1e-30 139.4 221 42.5
MSTRG.13563 Avicennia marina HOM05D007426 ORTHO05D009167 2.0e-29 135.2 239 36.8
Rhsim09G0137400 Rhododendron simsii HOM05D007426 ORTHO05D009167 2.0e-29 135.2 225 39.6
VMungo1215G1392 Vigna mungo HOM05D007426 ORTHO05D009167 2.0e-29 135.2 140 50.7
vmacro10360 Vaccinium macrocarpon HOM05D007426 ORTHO05D009167 2.6e-29 134.8 225 39.6
Lalb_Chr10g0096341 Lupinus albus HOM05D007426 ORTHO05D009167 1.7e-28 132.1 238 40.3
Phvul.003G029100 Phaseolus vulgaris HOM05D007426 ORTHO05D009167 3.8e-28 131.0 140 48.6
SalBow8G0581 Salvia bowleyana HOM05D007426 ORTHO05D009167 4.9e-28 130.6 136 49.3
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 1.4e-27 129.0 185 42.7
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 1.4e-27 129.0 139 46.8
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 3.2e-27 127.9 196 41.8
Psat6g044600 Pisum sativum HOM05D007426 ORTHO05D009167 3.2e-27 127.9 213 40.8
Lj2g0001206 Lotus japonicus HOM05D007426 ORTHO05D009167 4.2e-27 127.5 182 44.0
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 5.4e-27 127.1 182 41.8
Glyma.13G034900 Glycine max HOM05D007426 ORTHO05D009167 5.4e-27 127.1 139 46.0
FAN12G1804 Fragaria x ananassa HOM05D007426 ORTHO05D009167 7.1e-27 126.7 214 40.2
Cc11_g09290 Coffea canephora HOM05D007426 ORTHO05D009167 4.6e-26 124.0 132 46.2
PGSC0003DMG402030517 Solanum tuberosum HOM05D007426 ORTHO05D009167 4.6e-26 124.0 138 44.2
CDE04G0172 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 6.0e-26 123.6 174 45.4
FAN12G0928 Fragaria x ananassa HOM05D007426 ORTHO05D009167 7.9e-26 123.2 216 40.7
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 7.9e-26 123.2 138 43.5
Actinidia34749 Actinidia chinensis HOM05D007426 ORTHO05D009167 1.0e-25 122.9 212 39.2
Solyc05g008560.1 Solanum lycopersicum HOM05D007426 ORTHO05D009167 1.3e-25 122.5 138 42.8
Lsat_1_v5_gn_4_15701 Lactuca sativa HOM05D007426 ORTHO05D009167 2.3e-25 121.7 181 37.6
SGA_v2.0_scaffold376G50296 Striga asiatica HOM05D007426 ORTHO05D009167 3.9e-25 120.9 164 42.7
HPP92_023011 Vanilla planifolia HOM05D007426 ORTHO05D009167 3.9e-25 120.9 135 47.4
Nitab4.5_0000350g0090 Nicotiana tabacum HOM05D007426 ORTHO05D009167 3.3e-24 117.9 138 42.8
ECA234G2171 Erigeron canadensis HOM05D007426 ORTHO05D009167 3.7e-23 114.4 167 35.9
Medtr1g031720 Medicago truncatula HOM05D007426 ORTHO05D009167 4.8e-23 114.0 141 44.0
Nitab4.5_0003886g0020 Nicotiana tabacum HOM05D007426 ORTHO05D009167 1.8e-22 112.1 138 41.3
CAN.G1489.16 Capsicum annuum HOM05D007426 ORTHO05D009167 9.0e-22 109.8 136 44.9
CSS0028756 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 2.4e-19 101.7 81 60.5
ATR0579G149 Amborella trichopoda HOM05D007426 ORTHO05D009167 6.0e-18 97.1 139 36.7
Migut.E00390 Erythranthe guttata HOM05D007426 ORTHO05D009167 7.9e-18 96.7 137 37.2
Oeu048376.1 Olea europaea HOM05D007426 ORTHO05D009167 1.6e-15 89.0 178 34.8
Cfa015816 Carpinus fangiana HOM05D007426 ORTHO05D009167 2.8e-15 88.2 73 60.3
C05p22100 Brassica napus HOM05D007426 ORTHO05D009167 1.8e-14 85.5 180 88.3
TPR.G36966 Trifolium pratense HOM05D007426 ORTHO05D009167 2.6e-13 81.6 139 38.1
BcaC05g26202 Brassica carinata HOM05D007426 ORTHO05D009167 7.9e-10 70.1 43 76.7
BolC5t30906H Brassica oleracea HOM05D007426 ORTHO05D009167 7.9e-10 70.1 43 76.7
FvH4_4g26410 Fragaria vesca HOM05D007426 ORTHO05D009167 6.7e-09 67.0 92 43.5
SEGI_36761 Sequoiadendron giganteum HOM05D007426 ORTHO05D009167 8.7e-09 66.6 168 26.8
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 3.3e-08 64.7 65 52.3
FAN17G2923 Fragaria x ananassa HOM05D007426 ORTHO05D009167 4.1e-06 57.8 83 42.2
Gohir.A02G014400 Gossypium hirsutum HOM05D007128 ORTHO05D009059 4.1e-06 57.8 155 29.0
Duzib151G0548 Durio zibethinus HOM05D007128 ORTHO05D009059 9.0e-06 56.6 148 30.4
Gorai.005G019500 Gossypium raimondii HOM05D007128 ORTHO05D009059 9.0e-06 56.6 155 29.0
Zm00001eb406750 Zea mays HOM05D025020 ORTHO05D009167 9.0e-06 56.6 140 35.0


User provided reference genes

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