Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 3.4e-98 361.7 185 100.0
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 9.6e-77 290.4 187 85.6
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 7.6e-74 280.8 192 81.2
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 1.6e-71 273.1 186 75.3
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 9.6e-61 237.3 194 68.6
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 1.4e-40 170.2 208 54.3
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 2.5e-40 169.5 205 54.1
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 7.2e-40 167.9 210 54.3
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 2.1e-39 166.4 219 52.1
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 2.3e-38 162.9 221 49.3
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 3.0e-38 162.5 217 49.8
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 3.0e-38 162.5 210 53.3
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 1.1e-37 160.6 218 51.4
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 1.5e-37 160.2 211 51.2
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 1.5e-37 160.2 211 51.2
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 1.5e-37 160.2 211 51.2
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 7.4e-37 157.9 226 49.6
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.7e-36 156.8 228 48.7
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 2.8e-36 156.0 219 51.1
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 3.1e-35 152.5 208 48.1
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 9.1e-35 151.0 213 47.9
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 9.1e-35 151.0 213 47.9
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 9.1e-35 151.0 222 47.3
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 1.2e-34 150.6 208 47.6
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 6.5e-33 144.8 225 47.1
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 1.4e-32 143.7 198 47.5
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 4.2e-32 142.1 219 47.5
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 5.5e-32 141.7 211 44.1
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 1.6e-31 140.2 212 48.1
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 1.7e-28 130.2 199 46.7
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 3.5e-26 122.5 186 46.2
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 1.0e-22 110.9 168 48.2
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 1.8e-22 110.2 166 45.2
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 7.5e-21 104.8 156 48.1
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 9.7e-21 104.4 167 45.5
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 4.8e-20 102.1 201 44.3
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 4.8e-20 102.1 196 41.8
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.8e-20 102.1 200 39.0
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 4.8e-20 102.1 166 44.6
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 6.3e-20 101.7 177 40.7
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 1.1e-19 100.9 200 39.0
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 1.4e-19 100.5 145 44.1
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 1.4e-19 100.5 194 43.8
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.4e-19 99.8 202 38.6
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 3.1e-19 99.4 191 40.8
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 5.3e-19 98.6 141 46.8
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 5.3e-19 98.6 132 48.5
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 1.6e-18 97.1 181 44.2
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 1.6e-18 97.1 167 40.7
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 1.6e-18 97.1 166 39.8
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 2.0e-18 96.7 182 42.3
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 2.0e-18 96.7 211 38.4
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 2.7e-18 96.3 191 40.8
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 2.7e-18 96.3 180 42.2
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 2.7e-18 96.3 170 43.5
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 2.7e-18 96.3 186 40.9
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 3.5e-18 95.9 215 40.9
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 4.5e-18 95.5 182 42.3
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 5.9e-18 95.1 214 40.7
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 5.9e-18 95.1 136 44.9
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 5.9e-18 95.1 183 39.9
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 1.3e-17 94.0 180 41.7
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 2.2e-17 93.2 160 45.0
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 2.9e-17 92.8 178 42.1
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.9e-17 92.8 192 38.0
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.9e-17 92.8 200 37.5
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 5.0e-17 92.0 166 39.8
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 6.5e-17 91.7 157 42.7
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 6.5e-17 91.7 201 39.8
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 1.5e-16 90.5 195 38.5
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.5e-16 90.5 192 40.1
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 1.5e-16 90.5 210 38.6
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 1.9e-16 90.1 189 39.2
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.9e-16 90.1 210 38.1
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 2.5e-16 89.7 190 37.9
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 5.5e-16 88.6 209 38.3
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 5.5e-16 88.6 126 47.6
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 7.2e-16 88.2 158 39.9
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 1.6e-15 87.0 174 40.2
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 4.7e-15 85.5 174 39.7
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 4.7e-15 85.5 185 38.9
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 4.7e-15 85.5 168 42.3
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 6.1e-15 85.1 151 40.4
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 8.0e-15 84.7 207 39.1
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 8.0e-15 84.7 166 40.4
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 8.0e-15 84.7 186 38.7
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 8.0e-15 84.7 215 36.3
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 8.0e-15 84.7 158 40.5
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 1.0e-14 84.3 170 41.8
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 1.0e-14 84.3 199 38.2
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 1.4e-14 84.0 156 43.6
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 1.4e-14 84.0 155 38.1
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 1.8e-14 83.6 192 37.5
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 1.8e-14 83.6 151 43.7
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 2.3e-14 83.2 174 40.2
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 3.0e-14 82.8 153 42.5
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 5.2e-14 82.0 159 39.6
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 8.8e-14 81.3 149 40.9
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 1.2e-13 80.9 149 40.9
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 1.5e-13 80.5 169 36.1
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 1.5e-13 80.5 176 38.1
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 2.6e-13 79.7 191 37.2
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 3.4e-13 79.3 147 42.9
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 4.4e-13 79.0 188 34.6
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 7.5e-13 78.2 141 39.7
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 3.7e-12 75.9 158 38.0
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 4.8e-12 75.5 164 37.2
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 8.3e-12 74.7 151 43.0
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 8.3e-12 74.7 176 38.6
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.4e-11 73.2 177 37.9
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.2e-10 70.9 177 37.3
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 1.2e-10 70.9 172 33.1
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 2.0e-10 70.1 187 37.4
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 2.7e-10 69.7 148 35.8
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 3.5e-10 69.3 172 37.2
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 3.5e-10 69.3 176 37.5
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 5.9e-10 68.6 180 35.6
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 5.9e-10 68.6 138 40.6
HPP92_006868 Vanilla planifolia HOM05D064031 ORTHO05D005944 7.7e-10 68.2 180 31.1
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 1.0e-09 67.8 130 40.8
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 1.0e-09 67.8 99 51.5
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 1.3e-09 67.4 135 39.3
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 1.7e-09 67.0 205 33.2
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 2.3e-09 66.6 149 36.9
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 2.3e-09 66.6 179 39.1
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 3.8e-09 65.9 203 33.0
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 5.0e-09 65.5 114 49.1
HPP92_006851 Vanilla planifolia HOM05D064031 ORTHO05D005944 5.0e-09 65.5 180 31.1
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 6.5e-09 65.1 128 40.6
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 3.2e-08 62.8 180 35.0
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 7.2e-08 61.6 198 34.3
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 2.1e-07 60.1 189 32.8
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 6.1e-07 58.5 112 40.2
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 6.1e-07 58.5 112 40.2
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 6.1e-07 58.5 173 34.1
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 6.1e-07 58.5 199 33.2
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.0e-06 57.8 112 40.2
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 2.3e-06 56.6 135 38.5


User provided reference genes

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