Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G35910 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 6.7e-35 150.2 80 100.0
Thhalv10017760m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 2.0e-10 68.9 49 77.6
BcaNung06516 Brassica carinata HOM05D004100 ORTHO05D004781 2.8e-09 65.1 34 91.2
BolC4t28139H Brassica oleracea HOM05D000076 ORTHO05D001377 3.7e-09 64.7 32 96.9
BraA04t18382Z Brassica rapa HOM05D000076 ORTHO05D001377 3.7e-09 64.7 32 96.9
BcaC02g11939 Brassica carinata HOM05D004100 ORTHO05D004781 4.8e-09 64.3 57 63.2
BraA03t11338Z Brassica rapa HOM05D000076 ORTHO05D001377 1.4e-08 62.8 30 100.0
AL4G34950 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 3.1e-08 61.6 29 100.0
AT2G37975 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 3.1e-08 61.6 29 100.0
BcaB01g03736 Brassica carinata HOM05D000076 ORTHO05D001377 3.1e-08 61.6 29 100.0
A04p29120 Brassica napus HOM05D004100 ORTHO05D004781 3.1e-08 61.6 29 100.0
BolC3t14861H Brassica oleracea HOM05D000076 ORTHO05D001377 3.1e-08 61.6 29 100.0
Carub.0004s1994 Capsella rubella HOM05D004100 ORTHO05D004781 3.1e-08 61.6 29 100.0
CARHR132530 Cardamine hirsuta HOM05D004100 ORTHO05D004781 3.1e-08 61.6 29 100.0
CARHR150630 Cardamine hirsuta HOM05D004100 ORTHO05D004781 3.1e-08 61.6 29 100.0
Sp4g20290 Schrenkiella parvula HOM05D004100 ORTHO05D004781 3.1e-08 61.6 29 100.0
Aa31sc250G10 Aethionema arabicum HOM05D004100 ORTHO05D004781 7.0e-08 60.5 29 96.6
BcaB02g09230 Brassica carinata HOM05D004100 ORTHO05D004781 7.0e-08 60.5 29 96.6
BraA05t19768Z Brassica rapa HOM05D004100 ORTHO05D004781 7.0e-08 60.5 29 96.6
THA.LOC104805700 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 7.0e-08 60.5 29 96.6
CANSAT35G1936 Cannabis sativa HOM05D004100 ORTHO05D004781 1.6e-07 59.3 29 93.1
Duzib093G2045 Durio zibethinus HOM05D004100 ORTHO05D004781 2.0e-07 58.9 29 93.1
Medtr4g019160 Medicago truncatula HOM05D004100 ORTHO05D004781 2.7e-07 58.5 44 65.9
Phvul.010G006600 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 2.7e-07 58.5 44 61.4
TPR.G8216 Trifolium pratense HOM05D004100 ORTHO05D004781 2.7e-07 58.5 44 65.9
Ah.12g057400 Amaranthus hybridus HOM05D004100 ORTHO05D004781 3.5e-07 58.2 44 68.2
Duzib128G0469 Durio zibethinus HOM05D004100 ORTHO05D004781 4.5e-07 57.8 29 89.7
Manes.08G084000 Manihot esculenta HOM05D004100 ORTHO05D004781 4.5e-07 57.8 29 89.7
Ah.02g116480 Amaranthus hybridus HOM05D004100 ORTHO05D004781 5.9e-07 57.4 44 68.2
Carub.0005s2067 Capsella rubella HOM05D004100 ORTHO05D004781 5.9e-07 57.4 29 89.7
CARHR163970 Cardamine hirsuta HOM05D004100 ORTHO05D004781 5.9e-07 57.4 29 89.7
Gohir.A04G087300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 5.9e-07 57.4 29 89.7
Gohir.D04G127700 Gossypium hirsutum HOM05D004100 ORTHO05D004781 5.9e-07 57.4 29 89.7
Gorai.012G110700 Gossypium raimondii HOM05D004100 ORTHO05D004781 5.9e-07 57.4 29 89.7
Glyma.01G109600 Glycine max HOM05D004100 ORTHO05D004781 7.7e-07 57.0 44 63.6
Glyma.03G074700 Glycine max HOM05D004100 ORTHO05D004781 7.7e-07 57.0 44 63.6
AL5G35090 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 1.3e-06 56.2 29 86.2
AT3G54085 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 1.3e-06 56.2 29 86.2
THA.LOC104816861 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 1.3e-06 56.2 29 86.2
Thecc.05G024300 Theobroma cacao HOM05D004100 ORTHO05D004781 1.7e-06 55.8 27 96.3
TWI53G1956 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 1.7e-06 55.8 27 96.3
TWI74G1404 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 1.7e-06 55.8 27 96.3
Atru.chr8.2126 Acer truncatum HOM05D004100 ORTHO05D004781 2.2e-06 55.5 29 82.8
Aa31sc516G30 Aethionema arabicum HOM05D004100 ORTHO05D004781 2.2e-06 55.5 27 96.3
arahy.Tifrunner.gnm1.ann1.97IM7W Arachis hypogaea HOM05D004100 ORTHO05D004781 2.9e-06 55.1 42 69.0
Eucgr.E00256 Eucalyptus grandis HOM05D004100 ORTHO05D004781 3.8e-06 54.7 29 86.2
Thhalv10010931m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 3.8e-06 54.7 29 86.2
Hma1.2p1_0026F.1_g016830 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 3.8e-06 54.7 29 86.2
Potri.016G109500 Populus trichocarpa HOM05D004100 ORTHO05D004781 3.8e-06 54.7 30 80.0
RcHm_v2.0_Chr3g0464081 Rosa chinensis HOM05D004100 ORTHO05D004781 3.8e-06 54.7 44 56.8
Sc11g0006410 Simmondsia chinensis HOM05D004100 ORTHO05D004781 3.8e-06 54.7 49 61.2
GSVIVG01013495001 Vitis vinifera HOM05D004100 ORTHO05D004781 3.8e-06 54.7 29 82.8
arahy.Tifrunner.gnm1.ann1.7Y0XMR Arachis hypogaea HOM05D004100 ORTHO05D004781 5.0e-06 54.3 49 63.3
Medtr5g081650 Medicago truncatula HOM05D004100 ORTHO05D004781 5.0e-06 54.3 29 86.2
Nn6g33749 Nelumbo nucifera HOM05D004100 ORTHO05D004781 5.0e-06 54.3 29 86.2
Psat2g035960 Pisum sativum HOM05D004100 ORTHO05D004781 5.0e-06 54.3 29 86.2
TPR.G8047 Trifolium pratense HOM05D004100 ORTHO05D004781 5.0e-06 54.3 29 86.2
arahy.Tifrunner.gnm1.ann1.0IJH0T Arachis hypogaea HOM05D004100 ORTHO05D087279 6.5e-06 53.9 52 57.7
ClCG10G021700 Citrullus lanatus HOM05D004100 ORTHO05D004781 6.5e-06 53.9 44 59.1
Ciclev10013247m.g Citrus clementina HOM05D004100 ORTHO05D004781 6.5e-06 53.9 29 82.8
A09p47070 Brassica napus HOM05D004100 ORTHO05D004781 8.5e-06 53.5 29 82.8


User provided reference genes

Program Settings