Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 5.0e-158 561.2 319 100.0
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.1e-139 500.4 320 89.7
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 2.9e-129 465.7 322 87.0
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 2.4e-128 462.6 329 80.9
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 1.1e-123 447.2 325 84.0
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 1.3e-116 423.7 327 75.5
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 4.0e-115 418.7 329 75.1
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 1.2e-106 390.6 326 70.6
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 1.2e-106 390.6 326 70.6
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 1.2e-106 390.6 326 70.6
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 1.2e-106 390.6 326 71.8
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 1.5e-106 390.2 333 71.5
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 1.9e-101 373.2 319 65.8
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 1.8e-99 366.7 322 64.9
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 2.2e-97 359.8 319 62.1
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 3.8e-97 359.0 331 67.7
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 2.1e-92 343.2 319 59.9
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 1.4e-83 313.9 344 61.6
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 1.4e-83 313.9 344 61.6
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 1.4e-83 313.9 344 61.6
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 4.5e-82 308.9 334 61.1
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 4.3e-77 292.4 343 57.7
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 1.7e-76 290.4 346 57.8
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 2.2e-76 290.0 349 59.3
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 1.5e-74 283.9 357 57.7
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 2.0e-74 283.5 335 60.0
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 3.4e-74 282.7 351 59.3
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 1.1e-72 277.7 342 55.8
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 2.5e-72 276.6 343 53.4
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 2.5e-72 276.6 343 58.0
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 5.5e-72 275.4 342 55.6
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 7.9e-71 271.6 354 58.5
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 3.9e-70 269.2 357 56.3
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 3.9e-70 269.2 357 56.9
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 3.7e-68 262.7 341 54.0
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 6.3e-68 261.9 345 54.2
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 8.2e-68 261.5 347 55.6
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 1.1e-67 261.2 341 54.0
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 1.1e-67 261.2 345 54.2
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 3.1e-67 259.6 341 54.0
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 3.5e-66 256.1 354 56.2
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 3.5e-66 256.1 354 56.2
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 3.5e-66 256.1 354 56.2
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.7e-65 253.8 328 50.3
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 7.2e-64 248.4 153 81.7
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 1.4e-62 244.2 356 48.9
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.3e-61 239.6 357 47.6
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 4.4e-61 239.2 357 47.9
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 7.5e-61 238.4 359 46.2
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 2.2e-60 236.9 350 54.0
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 1.8e-59 233.8 357 47.6
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 2.4e-59 233.4 370 46.5
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 2.4e-59 233.4 349 48.7
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 9.1e-59 231.5 355 47.6
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.6e-58 230.7 354 47.5
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 4.5e-58 229.2 349 47.3
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 7.7e-58 228.4 351 47.3
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 7.7e-58 228.4 360 48.6
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 1.0e-57 228.0 359 46.8
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.0e-57 228.0 344 48.0
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 6.5e-57 225.3 334 44.3
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 8.5e-57 224.9 364 45.6
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.1e-56 224.6 341 47.2
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 1.9e-56 223.8 358 44.1
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 3.2e-56 223.0 362 44.5
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 4.2e-56 222.6 337 49.0
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 5.5e-56 222.2 357 45.7
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 9.4e-56 221.5 357 44.8
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 1.2e-55 221.1 341 46.9
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 1.2e-55 221.1 350 46.6
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 3.6e-55 219.5 300 53.7
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 6.1e-55 218.8 353 49.9
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 6.1e-55 218.8 345 44.3
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.4e-54 217.6 351 49.9
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 4.0e-54 216.1 356 49.2
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 2.0e-53 213.8 355 48.7
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 3.4e-53 213.0 353 47.3
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 4.4e-53 212.6 337 46.0
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 4.4e-53 212.6 345 47.0
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 7.5e-53 211.8 338 43.8
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 9.8e-53 211.5 366 47.0
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 1.3e-52 211.1 350 49.4
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 3.7e-52 209.5 350 45.1
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 8.3e-52 208.4 309 48.2
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 1.1e-51 208.0 364 43.1
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 1.4e-51 207.6 345 48.4
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 1.4e-51 207.6 336 46.1
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 1.8e-51 207.2 367 44.4
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 3.1e-51 206.5 384 40.1
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 5.4e-51 205.7 343 47.5
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 9.1e-51 204.9 341 47.2
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 9.1e-51 204.9 347 45.8
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 2.0e-50 203.8 362 40.3
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 4.5e-50 202.6 373 42.4
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 5.9e-50 202.2 340 47.9
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 1.0e-49 201.4 357 44.3
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 1.7e-49 200.7 372 42.2
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 2.2e-49 200.3 268 53.0
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 3.2e-48 196.4 334 50.3
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 5.5e-48 195.7 362 40.1
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 9.4e-48 194.9 354 46.6
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 1.2e-47 194.5 354 42.7
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 1.6e-47 194.1 352 44.0
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 2.1e-47 193.7 349 38.4
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 6.1e-47 192.2 324 44.1
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 8.0e-47 191.8 328 44.8
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 8.8e-46 188.3 308 45.8
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 2.6e-45 186.8 334 46.4
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 4.4e-45 186.0 359 43.5
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 7.5e-45 185.3 354 42.4
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 1.4e-43 181.0 368 37.8
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 3.1e-43 179.9 337 40.1
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 4.1e-43 179.5 340 47.1
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 5.4e-43 179.1 328 43.9
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 2.0e-42 177.2 366 39.9
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 2.7e-42 176.8 340 45.0
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 2.7e-42 176.8 357 41.7
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 2.7e-42 176.8 340 38.8
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 7.7e-42 175.3 340 41.8
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 1.7e-41 174.1 330 41.5
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 1.7e-41 174.1 293 43.7
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 2.3e-41 173.7 354 37.6
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 3.8e-41 172.9 340 47.4
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 4.3e-40 169.5 334 43.1
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 1.6e-39 167.5 337 44.2
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 2.1e-39 167.2 324 37.3
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 2.8e-39 166.8 337 41.5
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 6.1e-39 165.6 339 39.2
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 8.0e-39 165.2 257 42.4
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 4.0e-38 162.9 325 44.3
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 8.9e-38 161.8 334 43.7
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 1.5e-37 161.0 356 40.4
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 4.4e-37 159.5 337 41.2
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 5.7e-37 159.1 338 39.9
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 9.8e-37 158.3 355 41.1
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 2.9e-36 156.8 351 41.3
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 1.8e-35 154.1 326 39.0
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 1.6e-34 151.0 348 43.4
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 1.0e-33 148.3 342 38.9
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 3.9e-33 146.4 286 41.6
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 9.5e-32 141.7 365 38.4
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 2.8e-31 140.2 238 41.6
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 6.2e-31 139.0 376 35.1
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 8.0e-31 138.7 350 37.7
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 1.0e-30 138.3 336 33.9
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 5.2e-30 136.0 358 37.2
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 8.9e-30 135.2 177 48.6
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 8.9e-30 135.2 307 37.1
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 8.9e-30 135.2 326 40.2
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 5.8e-29 132.5 350 31.4
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 4.9e-28 129.4 338 36.4
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 1.1e-27 128.3 360 41.4
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 5.4e-27 125.9 336 30.4
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 2.0e-26 124.0 369 31.2
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 3.5e-26 123.2 248 44.4
BolC8t49783H Brassica oleracea HOM05D003923 ORTHO05D004553 3.9e-25 119.8 94 76.6
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 6.6e-25 119.0 408 30.4
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 3.3e-24 116.7 334 35.0
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 4.3e-24 116.3 329 39.5
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 5.6e-24 115.9 238 37.0
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 4.7e-23 112.8 321 37.7
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 4.7e-23 112.8 221 46.6
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 4.7e-23 112.8 422 32.7
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 2.6e-21 107.1 254 39.0
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 4.4e-21 106.3 102 59.8
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 5.4e-19 99.4 208 35.6
C08p21440 Brassica napus HOM05D003923 ORTHO05D004553 9.2e-19 98.6 49 91.8
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 8.6e-17 92.0 346 34.7
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 1.9e-16 90.9 113 51.3
BcaC07g38451 Brassica carinata HOM05D003923 ORTHO05D004553 2.5e-16 90.5 94 56.4
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 2.0e-13 80.9 162 43.2
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 4.9e-12 76.3 162 35.2
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 7.1e-11 72.4 284 30.6
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 3.5e-10 70.1 198 32.8
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 6.6e-09 65.9 272 27.2
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 7.3e-08 62.4 370 24.6
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.1e-06 58.5 277 26.4
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 1.4e-06 58.2 366 32.8
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 5.2e-06 56.2 174 28.7
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 6.8e-06 55.8 291 23.7


User provided reference genes

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