Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 4.5e-139 498.0 278 100.0
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 3.0e-122 442.2 278 89.6
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 1.2e-104 383.6 279 82.4
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 1.2e-99 367.1 282 78.0
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 1.9e-97 359.8 286 73.1
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 2.5e-97 359.4 287 72.8
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 2.8e-96 355.9 286 72.7
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 1.2e-94 350.5 285 74.0
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 2.0e-94 349.7 284 72.5
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 8.4e-93 344.4 285 73.3
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 1.6e-91 340.1 282 72.3
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 6.4e-85 318.2 255 72.2
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 1.9e-81 306.6 287 66.9
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 1.9e-81 306.6 287 66.9
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 4.8e-80 302.0 278 66.2
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 1.2e-78 297.4 289 66.8
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 3.5e-75 285.8 266 70.7
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 2.3e-58 229.9 259 55.6
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 9.7e-49 198.0 128 79.7
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 1.4e-47 194.1 127 81.1
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 1.4e-34 151.0 293 38.9
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 5.2e-34 149.1 268 42.9
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 5.2e-34 149.1 146 56.8
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 6.8e-34 148.7 94 83.0
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 6.8e-34 148.7 94 83.0
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 9.8e-33 144.8 289 41.2
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 1.7e-32 144.1 122 70.5
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 8.3e-32 141.7 94 80.9
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 2.4e-31 140.2 274 38.7
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 5.4e-31 139.0 290 38.6
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 7.0e-31 138.7 274 38.3
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 9.1e-31 138.3 268 44.4
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 5.9e-30 135.6 191 47.6
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 7.7e-30 135.2 145 56.6
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 6.6e-29 132.1 135 54.8
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 8.6e-29 131.7 147 51.7
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 1.5e-28 131.0 167 48.5
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.9e-28 130.6 167 47.9
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.3e-28 129.8 151 53.6
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 3.3e-28 129.8 148 54.7
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.2e-28 129.4 135 57.0
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 5.5e-28 129.0 169 48.5
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 7.2e-28 128.6 167 47.9
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 1.2e-27 127.9 287 38.7
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.6e-27 127.5 176 49.4
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 3.6e-27 126.3 136 52.9
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.7e-27 125.9 135 57.8
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 6.1e-27 125.6 130 56.9
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 6.1e-27 125.6 145 53.1
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 1.0e-26 124.8 138 52.9
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 1.4e-26 124.4 179 49.2
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 3.0e-26 123.2 187 44.9
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 2.0e-25 120.6 139 55.4
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 3.4e-25 119.8 125 55.2
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 3.4e-25 119.8 154 51.3
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 3.4e-25 119.8 167 47.9
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 7.5e-25 118.6 295 36.9
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 7.5e-25 118.6 250 40.0
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 9.8e-25 118.2 256 39.5
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 1.7e-24 117.5 241 35.7
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 8.3e-24 115.2 132 50.0
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 1.1e-23 114.8 233 37.8
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 1.1e-23 114.8 118 51.7
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 1.4e-23 114.4 151 47.0
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 1.8e-23 114.0 112 55.4
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 7.0e-23 112.1 137 49.6
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 9.2e-23 111.7 127 48.8
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 1.6e-22 110.9 158 46.2
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.0e-22 110.5 127 53.5
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 2.7e-22 110.2 120 51.7
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.5e-22 109.8 165 43.0
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 5.9e-22 109.0 164 42.1
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 7.8e-22 108.6 123 49.6
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 7.8e-22 108.6 164 42.1
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.8e-22 108.6 127 54.3
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 1.0e-21 108.2 126 53.2
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.7e-21 107.5 127 53.5
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.3e-21 107.1 165 41.8
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 2.9e-21 106.7 164 41.5
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 3.9e-21 106.3 125 52.8
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 2.5e-20 103.6 193 39.9
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.3e-20 103.2 124 50.8
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.3e-20 103.2 124 50.8
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 4.3e-20 102.8 113 52.2
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 4.3e-20 102.8 159 45.9
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 4.3e-20 102.8 104 53.8
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 4.3e-20 102.8 105 53.3
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 5.6e-20 102.4 138 47.8
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 9.5e-20 101.7 63 74.6
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 1.6e-19 100.9 199 43.7
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 2.8e-19 100.1 250 34.4
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 4.7e-19 99.4 158 43.0
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 6.1e-19 99.0 111 47.7
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 6.1e-19 99.0 181 38.1
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 8.0e-19 98.6 140 47.9
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 3.1e-18 96.7 135 45.9
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 5.2e-18 95.9 121 48.8
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 6.8e-18 95.5 145 41.4
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 8.9e-18 95.1 72 63.9
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 8.9e-18 95.1 72 63.9
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 2.0e-17 94.0 146 43.8
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.6e-17 93.6 160 40.0
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 4.4e-17 92.8 166 39.2
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 5.8e-17 92.4 118 48.3
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 5.8e-17 92.4 137 47.4
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 9.8e-17 91.7 153 45.1
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 9.8e-17 91.7 152 42.1
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 1.3e-16 91.3 109 46.8
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.7e-16 90.9 118 47.5
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 2.2e-16 90.5 158 41.1
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.9e-16 90.1 186 36.6
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 3.7e-16 89.7 82 56.1
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 1.1e-15 88.2 61 67.2
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.1e-15 88.2 139 43.2
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 1.1e-15 88.2 99 49.5
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.4e-15 87.8 260 33.5
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 1.9e-15 87.4 84 51.2
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 3.2e-15 86.7 67 65.7
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 4.1e-15 86.3 140 43.6
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 4.1e-15 86.3 149 43.0
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 4.1e-15 86.3 121 42.1
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 2.0e-14 84.0 151 41.1
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 2.0e-14 84.0 122 42.6
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 3.5e-14 83.2 163 41.1
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 3.5e-14 83.2 66 62.1
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 4.6e-14 82.8 124 47.6
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 6.0e-14 82.4 126 41.3
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 1.0e-13 81.6 137 43.1
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 2.3e-13 80.5 124 46.0
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 3.0e-13 80.1 124 41.9
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 6.6e-13 79.0 173 35.8
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 3.3e-12 76.6 214 34.6
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 8.0e-11 72.0 115 38.3
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 8.0e-11 72.0 115 38.3
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 8.0e-11 72.0 121 40.5
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 1.1e-10 71.6 111 45.0
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 1.4e-10 71.2 80 46.2
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 4.0e-10 69.7 46 65.2
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 4.0e-10 69.7 115 40.9
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 5.2e-10 69.3 67 53.7
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 8.9e-10 68.6 142 40.1
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 8.9e-10 68.6 142 40.1
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 4.4e-09 66.2 146 37.7
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 5.8e-09 65.9 160 33.8
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 9.8e-09 65.1 123 41.5
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 2.2e-08 63.9 244 33.2
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 4.9e-08 62.8 135 34.8
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 6.4e-08 62.4 46 60.9
TPR.G28946 Trifolium pratense HOM05D016564 ORTHO05D019006 8.3e-08 62.0 121 38.8
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 2.4e-07 60.5 186 32.3
Lj3g0000197 Lotus japonicus HOM05D004622 ORTHO05D005431 2.4e-07 60.5 176 33.0
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 4.1e-07 59.7 136 33.8
Duzib170G0788 Durio zibethinus HOM05D004622 ORTHO05D005431 4.1e-07 59.7 122 29.5
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 7.1e-07 58.9 140 37.9
RcHm_v2.0_Chr3g0453941 Rosa chinensis HOM05D006966 ORTHO05D008111 7.1e-07 58.9 127 34.6
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 9.2e-07 58.5 66 43.9
PGR102G1757 Punica granatum HOM05D004622 ORTHO05D005431 1.2e-06 58.2 144 34.0
Cpa.g.sc195.5 Carica papaya HOM05D004622 ORTHO05D005431 1.6e-06 57.8 124 30.6
Cc02_g32560 Coffea canephora HOM05D006966 ORTHO05D008111 1.6e-06 57.8 116 35.3
PSO384G0540 Papaver somniferum HOM05D004622 ORTHO05D005431 2.7e-06 57.0 74 41.9
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 4.6e-06 56.2 128 37.5
Psat3g009600 Pisum sativum HOM05D006966 ORTHO05D008111 6.0e-06 55.8 118 36.4
unitig_0.g1476 Utricularia gibba HOM05D000020 ORTHO05D000543 6.0e-06 55.8 75 40.0
Cpa.g.sc195.4 Carica papaya HOM05D004622 ORTHO05D005431 7.8e-06 55.5 77 37.7
Sed0001344 Sechium edule HOM05D004622 ORTHO05D005431 7.8e-06 55.5 96 35.4


User provided reference genes

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