Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G35190 Arabidopsis lyrata HOM05D000484 ORTHO05D019716 1.5e-32 142.9 116 100.0
AL1G35380 Arabidopsis lyrata HOM05D000484 ORTHO05D000346 1.4e-25 119.8 58 98.3
AT1G21980 Arabidopsis thaliana HOM05D000484 ORTHO05D000346 3.1e-25 118.6 58 98.3
Carub.0001s2151 Capsella rubella HOM05D000484 ORTHO05D000346 3.1e-25 118.6 58 98.3
Aa31LG7G5970 Aethionema arabicum HOM05D000484 ORTHO05D000346 1.8e-20 102.8 58 87.9
CARHR022340 Cardamine hirsuta HOM05D000484 ORTHO05D000346 2.3e-20 102.4 52 94.2
Sp1g19500 Schrenkiella parvula HOM05D000484 ORTHO05D000346 5.2e-20 101.3 58 87.9
Thhalv10018171m.g Eutrema salsugineum HOM05D000484 ORTHO05D000346 9.7e-19 97.1 58 82.8
Sp5g32910 Schrenkiella parvula HOM05D000484 ORTHO05D000346 9.7e-19 97.1 58 82.8
THA.LOC104800182 Tarenaya hassleriana HOM05D000484 ORTHO05D000346 1.3e-18 96.7 58 84.5
Aa31LG4G7850 Aethionema arabicum HOM05D000484 ORTHO05D000346 2.8e-18 95.5 55 81.8
Thhalv10009232m.g Eutrema salsugineum HOM05D000484 ORTHO05D019716 4.8e-18 94.7 47 93.6
AL2G37970 Arabidopsis lyrata HOM05D000484 ORTHO05D000346 1.6e-16 89.7 55 80.0
AT1G77740 Arabidopsis thaliana HOM05D000484 ORTHO05D000346 2.0e-16 89.4 50 86.0
Carub.0002s2463 Capsella rubella HOM05D000484 ORTHO05D000346 2.0e-16 89.4 50 86.0
CARHR071250 Cardamine hirsuta HOM05D000484 ORTHO05D000346 4.5e-16 88.2 50 84.0
BcaB05g25071 Brassica carinata HOM05D000484 ORTHO05D000346 1.3e-15 86.7 56 76.8
BcaC07g39132 Brassica carinata HOM05D000484 ORTHO05D000346 2.9e-15 85.5 59 72.9
A08p28700 Brassica napus HOM05D000484 ORTHO05D000346 2.9e-15 85.5 59 72.9
C08p21220 Brassica napus HOM05D000484 ORTHO05D000346 2.9e-15 85.5 59 72.9
BolC8t49763H Brassica oleracea HOM05D000484 ORTHO05D000346 2.9e-15 85.5 59 72.9
BcaB03g11889 Brassica carinata HOM05D000484 ORTHO05D000346 3.8e-15 85.1 59 74.6
A02p21780 Brassica napus HOM05D000484 ORTHO05D000346 5.0e-15 84.7 56 75.0
BolC2t09522H Brassica oleracea HOM05D000484 ORTHO05D000346 5.0e-15 84.7 56 75.0
BraA02t07183Z Brassica rapa HOM05D000484 ORTHO05D000346 5.0e-15 84.7 56 75.0
BcaC03g15766 Brassica carinata HOM05D000484 ORTHO05D000346 6.5e-15 84.3 56 75.0
BraA08t34800Z Brassica rapa HOM05D000484 ORTHO05D000346 8.5e-15 84.0 48 83.3
C02p35080 Brassica napus HOM05D000484 ORTHO05D000346 1.9e-14 82.8 50 80.0
Haze_00506 Corylus avellana HOM05D000484 ORTHO05D000346 1.5e-11 73.2 60 65.0
Thecc.08G118300 Theobroma cacao HOM05D000484 ORTHO05D000346 5.7e-11 71.2 66 62.1
THA.LOC104817037 Tarenaya hassleriana HOM05D000484 ORTHO05D000346 1.3e-10 70.1 60 63.3
Cc10_g10500 Coffea canephora HOM05D000484 ORTHO05D000346 1.7e-10 69.7 46 76.1
FAN27G1263 Fragaria x ananassa HOM05D000484 ORTHO05D000346 2.2e-10 69.3 56 60.7
Hund16828 Selenicereus undatus HOM05D000484 ORTHO05D000346 2.2e-10 69.3 51 66.7
MD08G1170300 Malus domestica HOM05D000484 ORTHO05D000346 2.8e-10 68.9 55 65.5
TWI12G1417 Tripterygium wilfordii HOM05D000484 ORTHO05D000346 3.7e-10 68.6 57 63.2
Eucgr.F03747 Eucalyptus grandis HOM05D000484 ORTHO05D000346 4.8e-10 68.2 59 61.0
Hund27049 Selenicereus undatus HOM05D000484 ORTHO05D000346 6.3e-10 67.8 49 67.3
Atru.chr13.1334 Acer truncatum HOM05D000484 ORTHO05D000346 1.1e-09 67.0 61 57.4
Atru.chr13.1377 Acer truncatum HOM05D000484 ORTHO05D000346 1.1e-09 67.0 61 57.4
Duzib116G0854 Durio zibethinus HOM05D000484 ORTHO05D000346 1.1e-09 67.0 54 66.7
MD15G1357100 Malus domestica HOM05D000484 ORTHO05D000346 1.1e-09 67.0 56 62.5
FvH4_2g26240 Fragaria vesca HOM05D000484 ORTHO05D000346 1.8e-09 66.2 61 57.4
FAN15G3241 Fragaria x ananassa HOM05D000484 ORTHO05D000346 1.8e-09 66.2 61 57.4
FAN24G2952 Fragaria x ananassa HOM05D000484 ORTHO05D000346 1.8e-09 66.2 61 57.4
SGA_v2.0_scaffold52G19014 Striga asiatica HOM05D000484 ORTHO05D000346 1.8e-09 66.2 52 63.5
TWI56G0700 Tripterygium wilfordii HOM05D000484 ORTHO05D000346 1.8e-09 66.2 58 60.3
Ca_23502_v3 Cicer arietinum L. HOM05D000484 ORTHO05D000346 2.4e-09 65.9 52 65.4
AUR62004705 Chenopodium quinoa HOM05D000484 ORTHO05D000346 3.1e-09 65.5 55 61.8
Glyma.14G164700 Glycine max HOM05D000484 ORTHO05D000346 3.1e-09 65.5 50 70.0
Manes.02G159700 Manihot esculenta HOM05D000484 ORTHO05D000346 3.1e-09 65.5 58 60.3
Sed0009505 Sechium edule HOM05D000484 ORTHO05D000346 3.1e-09 65.5 50 66.0
Sc23g0000870 Simmondsia chinensis HOM05D000484 ORTHO05D000346 3.1e-09 65.5 54 61.1
DCAR_014118 Daucus carota HOM05D000484 ORTHO05D000346 4.1e-09 65.1 50 66.0
SalBow6G5157 Salvia bowleyana HOM05D000484 ORTHO05D000346 4.1e-09 65.1 50 64.0
MBI03_g28300_MAGBIO Magnolia biondii HOM05D000484 ORTHO05D000346 5.4e-09 64.7 66 53.0
CANSAT25G2257 Cannabis sativa HOM05D000484 ORTHO05D000346 7.0e-09 64.3 66 54.5
CiPaw.06G025700 Carya illinoinensis HOM05D000484 ORTHO05D000346 7.0e-09 64.3 60 56.7
DCAR_031245 Daucus carota HOM05D000484 ORTHO05D000346 9.1e-09 63.9 53 64.2
Dinv07923 Davidia involucrata HOM05D000484 ORTHO05D000346 9.1e-09 63.9 59 59.3
FAN20G0147 Fragaria x ananassa HOM05D000484 ORTHO05D000346 9.1e-09 63.9 61 55.7
Manes.18G073500 Manihot esculenta HOM05D000484 ORTHO05D000346 9.1e-09 63.9 56 60.7
Potri.002G088100 Populus trichocarpa HOM05D000484 ORTHO05D000346 9.1e-09 63.9 64 54.7
Sabra02G0069400 Salix brachista HOM05D000484 ORTHO05D000346 9.1e-09 63.9 64 54.7
Cpa.g.sc36.6 Carica papaya HOM05D000484 ORTHO05D000346 1.2e-08 63.5 71 49.3
PGR042G2828 Punica granatum HOM05D000484 ORTHO05D000346 1.2e-08 63.5 49 67.3
Ah.05g172380 Amaranthus hybridus HOM05D000484 ORTHO05D000346 1.6e-08 63.2 57 57.9
EL10Ac1g00025 Beta vulgaris HOM05D000484 ORTHO05D000346 1.6e-08 63.2 60 56.7
Lj4C591T4 Lonicera japonica HOM05D000484 ORTHO05D000346 1.6e-08 63.2 51 64.7
Potri.005G172800 Populus trichocarpa HOM05D000484 ORTHO05D000346 1.6e-08 63.2 54 61.1
TAR381G0222 Trochodendron aralioides HOM05D000484 ORTHO05D000346 1.6e-08 63.2 52 63.5
AUR62023621 Chenopodium quinoa HOM05D000484 ORTHO05D000346 2.0e-08 62.8 56 60.7
Migut.N03315 Erythranthe guttata HOM05D000484 ORTHO05D000346 2.0e-08 62.8 51 60.8
RcHm_v2.0_Chr6g0294851 Rosa chinensis HOM05D000484 ORTHO05D000346 2.0e-08 62.8 66 51.5
SalBow7G0243 Salvia bowleyana HOM05D000484 ORTHO05D000346 2.0e-08 62.8 51 60.8
SalBow7G4048 Salvia bowleyana HOM05D000484 ORTHO05D000346 2.0e-08 62.8 51 60.8
Glyma.13G083400 Glycine max HOM05D000484 ORTHO05D000346 2.7e-08 62.4 50 68.0
Phvul.008G166900 Phaseolus vulgaris HOM05D000484 ORTHO05D000346 2.7e-08 62.4 52 63.5
Rhsim11G0065800 Rhododendron simsii HOM05D000484 ORTHO05D000346 2.7e-08 62.4 49 65.3
SGA_v2.0_scaffold24G10499 Striga asiatica HOM05D000484 ORTHO05D000346 2.7e-08 62.4 52 59.6
SGA_v2.0_scaffold28G12019 Striga asiatica HOM05D000484 ORTHO05D000346 2.7e-08 62.4 52 61.5
VMungo0647G0577 Vigna mungo HOM05D000484 ORTHO05D000346 2.7e-08 62.4 52 63.5
CiPaw.05G227600 Carya illinoinensis HOM05D000484 ORTHO05D000346 3.5e-08 62.0 64 53.1
Prupe.1G504100 Prunus persica HOM05D000484 ORTHO05D000346 3.5e-08 62.0 59 55.9
unitig_0.g2125 Utricularia gibba HOM05D000484 ORTHO05D000346 3.5e-08 62.0 52 59.6
unitig_747.g21484 Utricularia gibba HOM05D000484 ORTHO05D000346 3.5e-08 62.0 52 59.6
MSTRG.22425 Avicennia marina HOM05D000484 ORTHO05D000346 4.5e-08 61.6 51 58.8
Lalb_Chr08g0241651 Lupinus albus HOM05D000484 ORTHO05D000346 4.5e-08 61.6 49 63.3
Peaxi162Scf00084g00168 Petunia axillaris HOM05D000484 ORTHO05D000346 4.5e-08 61.6 60 55.0
Psat2g077520 Pisum sativum HOM05D000484 ORTHO05D000346 4.5e-08 61.6 52 61.5
QL09p037055 Quercus lobata HOM05D000484 ORTHO05D000346 4.5e-08 61.6 62 56.5
TWI36G0476 Tripterygium wilfordii HOM05D000484 ORTHO05D000346 4.5e-08 61.6 58 56.9
TAR628G1610 Trochodendron aralioides HOM05D000484 ORTHO05D000346 4.5e-08 61.6 53 62.3
Solyc11g013180.2 Solanum lycopersicum HOM05D000484 ORTHO05D000346 5.9e-08 61.2 60 56.7
Sopen11g008220 Solanum pennellii HOM05D000484 ORTHO05D000346 5.9e-08 61.2 60 56.7
GSVIVG01008931001 Vitis vinifera HOM05D000484 ORTHO05D000346 5.9e-08 61.2 54 61.1
PGSC0003DMG400029029 Solanum tuberosum HOM05D000484 ORTHO05D000346 7.7e-08 60.8 60 56.7
arahy.Tifrunner.gnm1.ann1.DWXQ4A Arachis hypogaea HOM05D000484 ORTHO05D000346 1.0e-07 60.5 54 66.7
arahy.Tifrunner.gnm1.ann1.51L2LF Arachis hypogaea HOM05D000484 ORTHO05D000346 1.3e-07 60.1 54 66.7
Glyma.06G109400 Glycine max HOM05D000484 ORTHO05D000346 1.3e-07 60.1 46 65.2
Medtr5g459450 Medicago truncatula HOM05D000484 ORTHO05D000346 1.3e-07 60.1 52 61.5
Ciclev10000334m.g Citrus clementina HOM05D000484 ORTHO05D000346 1.7e-07 59.7 71 49.3
Migut.C01181 Erythranthe guttata HOM05D000484 ORTHO05D000346 1.7e-07 59.7 51 60.8
Oeu030033.1 Olea europaea HOM05D000484 ORTHO05D000346 1.7e-07 59.7 52 57.7
Sed0012969 Sechium edule HOM05D000484 ORTHO05D000346 1.7e-07 59.7 69 50.7
CSS0049669 Camellia sinensis var. sinensis HOM05D000484 ORTHO05D000346 2.3e-07 59.3 46 65.2
arahy.Tifrunner.gnm1.ann1.90S4QE Arachis hypogaea HOM05D000484 ORTHO05D000346 2.9e-07 58.9 68 48.5
MSTRG.25407 Avicennia marina HOM05D000484 ORTHO05D000346 2.9e-07 58.9 51 58.8
HanXRQChr15g0483151 Helianthus annuus HOM05D000484 ORTHO05D000346 2.9e-07 58.9 57 56.1
PGR044G2389 Punica granatum HOM05D000484 ORTHO05D000346 2.9e-07 58.9 47 66.0
Rhsim06G0108400 Rhododendron simsii HOM05D000484 ORTHO05D000346 2.9e-07 58.9 53 58.5
Sabra05G0130300 Salix brachista HOM05D000484 ORTHO05D000346 2.9e-07 58.9 54 59.3
TAR376G0732 Trochodendron aralioides HOM05D000484 ORTHO05D000346 2.9e-07 58.9 55 56.4
MELO3C010456.2 Cucumis melo HOM05D000484 ORTHO05D000346 3.8e-07 58.5 70 47.1
Lj4C598T2 Lonicera japonica HOM05D000484 ORTHO05D000346 3.8e-07 58.5 51 60.8
CAN.G2.40 Capsicum annuum HOM05D000484 ORTHO05D000346 5.0e-07 58.2 60 55.0
TPR.G8504 Trifolium pratense HOM05D000484 ORTHO05D000346 5.0e-07 58.2 52 59.6
arahy.Tifrunner.gnm1.ann1.4JL497 Arachis hypogaea HOM05D000484 ORTHO05D000346 6.6e-07 57.8 59 55.9
arahy.Tifrunner.gnm1.ann1.NKM11E Arachis hypogaea HOM05D000484 ORTHO05D000346 6.6e-07 57.8 59 55.9
Actinidia02598 Actinidia chinensis HOM05D000484 ORTHO05D000346 8.6e-07 57.4 59 55.9
Lalb_Chr11g0065731 Lupinus albus HOM05D000484 ORTHO05D000346 8.6e-07 57.4 47 63.8
arahy.Tifrunner.gnm1.ann1.WMGI63 Arachis hypogaea HOM05D000484 ORTHO05D000346 1.5e-06 56.6 68 47.1
Gohir.A05G268600 Gossypium hirsutum HOM05D000484 ORTHO05D000346 1.5e-06 56.6 42 66.7
Gohir.D05G270200 Gossypium hirsutum HOM05D000484 ORTHO05D000346 1.5e-06 56.6 42 66.7
Gorai.009G283000 Gossypium raimondii HOM05D000484 ORTHO05D000346 1.5e-06 56.6 42 66.7
MELO3C003057.2 Cucumis melo HOM05D000484 ORTHO05D000346 1.9e-06 56.2 70 47.1
CsaV3_5G023290 Cucumis sativus L. HOM05D000484 ORTHO05D000346 1.9e-06 56.2 70 47.1
Lj7A322T21 Lonicera japonica HOM05D000484 ORTHO05D000346 1.9e-06 56.2 56 57.1
Manes.12G083800 Manihot esculenta HOM05D000484 ORTHO05D000346 1.9e-06 56.2 49 55.1
Nn5g28094 Nelumbo nucifera HOM05D000484 ORTHO05D000346 1.9e-06 56.2 63 49.2
QL10p039234 Quercus lobata HOM05D000484 ORTHO05D000346 1.9e-06 56.2 46 60.9
Sc01g0001460 Simmondsia chinensis HOM05D000484 ORTHO05D000346 1.9e-06 56.2 52 59.6
vmacro12542 Vaccinium macrocarpon HOM05D000484 ORTHO05D000346 3.3e-06 55.5 56 55.4
Cfa002227 Carpinus fangiana HOM05D000484 ORTHO05D000346 4.2e-06 55.1 49 59.2
Haze_25404 Corylus avellana HOM05D000484 ORTHO05D000346 4.2e-06 55.1 49 59.2
Actinidia03502 Actinidia chinensis HOM05D000484 ORTHO05D000346 5.5e-06 54.7 54 51.9
MBI06_g01068_MAGBIO Magnolia biondii HOM05D000484 ORTHO05D000346 5.5e-06 54.7 42 66.7
Medtr3g097260 Medicago truncatula HOM05D000484 ORTHO05D000346 5.5e-06 54.7 38 68.4
Sopen04g007520 Solanum pennellii HOM05D000484 ORTHO05D000346 5.5e-06 54.7 59 49.2
TAR625G1390 Trochodendron aralioides HOM05D000484 ORTHO05D000346 5.5e-06 54.7 52 57.7
TAR727G0001 Trochodendron aralioides HOM05D000484 ORTHO05D000346 5.5e-06 54.7 52 57.7
CiPaw.04G179400 Carya illinoinensis HOM05D000484 ORTHO05D000346 9.5e-06 53.9 50 58.0
Ca_17017_v3 Cicer arietinum L. HOM05D000484 ORTHO05D000346 9.5e-06 53.9 38 68.4
Ca_29643_v3 Cicer arietinum L. HOM05D000484 ORTHO05D000346 9.5e-06 53.9 38 68.4
COL.COLO4_05059 Corchorus olitorius HOM05D000484 ORTHO05D000346 9.5e-06 53.9 38 71.1
Lj1g0002678 Lotus japonicus HOM05D000484 ORTHO05D000346 9.5e-06 53.9 41 63.4
Oeu017860.1 Olea europaea HOM05D000484 ORTHO05D000346 9.5e-06 53.9 49 57.1
Oeu017861.1 Olea europaea HOM05D000484 ORTHO05D000346 9.5e-06 53.9 49 57.1


User provided reference genes

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