Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 5.0e-134 481.1 241 100.0
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 2.0e-127 459.1 241 94.6
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 1.5e-122 443.0 241 90.5
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 1.4e-120 436.4 241 89.2
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 3.1e-120 435.3 240 90.0
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 7.2e-117 424.1 223 94.2
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 2.1e-116 422.5 239 88.7
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 2.1e-116 422.5 239 88.7
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 2.7e-116 422.2 239 88.7
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 2.7e-116 422.2 239 88.7
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 3.6e-116 421.8 239 88.3
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 1.8e-115 419.5 239 87.9
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 6.8e-115 417.5 230 89.1
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 6.8e-115 417.5 230 89.1
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 4.1e-112 408.3 239 87.0
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 3.5e-111 405.2 242 83.9
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 8.9e-99 364.0 228 73.7
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 3.4e-98 362.1 225 75.1
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 1.7e-97 359.8 228 73.7
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 2.9e-97 359.0 241 72.2
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 6.4e-97 357.8 241 71.8
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 2.0e-95 352.8 222 74.8
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 3.5e-95 352.1 228 71.9
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 3.5e-95 352.1 224 71.9
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 3.5e-95 352.1 228 69.7
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 2.3e-94 349.4 224 71.4
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 5.0e-94 348.2 224 71.4
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 6.6e-94 347.8 224 71.0
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 8.6e-94 347.4 241 69.7
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 1.1e-93 347.1 241 69.7
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 2.5e-93 345.9 241 66.8
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 4.3e-93 345.1 224 72.3
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 4.3e-93 345.1 226 70.8
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 4.3e-93 345.1 240 66.7
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 5.6e-93 344.7 240 70.4
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 5.6e-93 344.7 224 71.4
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 9.5e-93 344.0 226 71.2
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 9.5e-93 344.0 228 70.2
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 2.1e-92 342.8 226 70.4
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 2.1e-92 342.8 226 70.8
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 2.1e-92 342.8 224 71.0
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 3.6e-92 342.0 224 70.5
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 1.1e-91 340.5 226 70.8
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 1.1e-91 340.5 241 68.9
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 1.4e-91 340.1 226 70.4
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 1.4e-91 340.1 224 70.1
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 1.8e-91 339.7 223 70.4
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 2.3e-91 339.3 226 69.0
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 3.1e-91 339.0 224 69.2
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 3.1e-91 339.0 224 69.6
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 5.2e-91 338.2 226 69.5
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 5.2e-91 338.2 224 69.6
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 5.2e-91 338.2 226 69.5
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 6.8e-91 337.8 230 67.8
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 8.9e-91 337.4 224 71.0
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 8.9e-91 337.4 226 69.5
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 1.5e-90 336.7 241 67.2
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 2.6e-90 335.9 230 67.0
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 4.4e-90 335.1 229 68.1
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 5.8e-90 334.7 226 68.6
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 7.5e-90 334.3 226 68.1
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 7.5e-90 334.3 226 68.6
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 9.8e-90 334.0 241 66.8
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 2.2e-89 332.8 242 65.7
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 2.2e-89 332.8 224 69.2
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 2.9e-89 332.4 226 69.9
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 3.7e-89 332.0 226 68.6
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 4.9e-89 331.6 240 64.6
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 8.3e-89 330.9 241 64.7
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 1.4e-88 330.1 226 68.1
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 1.9e-88 329.7 222 70.7
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 4.1e-88 328.6 244 66.4
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 7.1e-88 327.8 226 66.8
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 9.2e-88 327.4 224 66.1
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 9.2e-88 327.4 243 65.0
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 9.2e-88 327.4 222 69.4
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 1.2e-87 327.0 250 66.0
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 1.6e-87 326.6 243 65.0
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 2.1e-87 326.2 222 70.3
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 1.0e-86 323.9 224 67.0
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 8.6e-86 320.9 216 68.5
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 5.6e-85 318.2 222 67.6
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 9.5e-85 317.4 220 67.3
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.2e-82 310.5 233 63.1
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 7.6e-82 307.8 261 59.4
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 7.6e-82 307.8 227 64.8
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 5.4e-80 301.6 229 62.9
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 1.0e-78 297.4 263 58.6
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 3.6e-76 288.9 196 66.8
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 4.0e-75 285.4 223 61.4
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 1.5e-74 283.5 197 65.5
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 2.2e-73 279.6 230 61.3
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.7e-71 272.7 195 65.6
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 4.8e-68 261.9 208 61.1
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 1.5e-66 256.9 177 71.8
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 2.1e-63 246.5 224 54.5
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 6.0e-63 245.0 222 55.9
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 1.8e-59 233.4 172 65.7
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 5.8e-58 228.4 149 71.1
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 2.2e-57 226.5 241 50.2
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 2.4e-56 223.0 241 50.6
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 3.9e-54 215.7 241 48.1
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 6.9e-51 204.9 155 63.2
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 3.9e-46 189.1 260 40.8
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 2.5e-45 186.4 137 62.0
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 9.0e-43 177.9 226 42.9
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 3.4e-42 176.0 124 64.5
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 2.2e-41 173.3 199 47.2
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 2.9e-41 172.9 224 40.2
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 2.9e-41 172.9 241 42.7
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 1.3e-36 157.5 196 45.9
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 9.4e-32 141.4 262 37.0
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 1.8e-30 137.1 172 44.2
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 5.0e-25 119.0 80 65.0
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 2.6e-21 106.7 110 48.2
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 1.6e-18 97.4 59 72.9
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 2.5e-16 90.1 55 72.7
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 4.4e-13 79.3 126 36.5
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 5.7e-13 79.0 56 67.9
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 2.4e-11 73.6 64 53.1
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 6.5e-09 65.5 210 26.2
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 1.5e-08 64.3 50 56.0
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 2.7e-07 60.1 47 51.1
C05p20820 Brassica napus HOM05D006717 ORTHO05D008139 2.7e-07 60.1 34 79.4
BolC5t30781H Brassica oleracea HOM05D006717 ORTHO05D008139 3.6e-07 59.7 34 79.4
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 1.4e-06 57.8 39 59.0
unitig_46.g18777 Utricularia gibba HOM05D004879 ORTHO05D425869 6.8e-06 55.5 40 62.5


User provided reference genes

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