Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 2.1e-106 389.0 198 100.0
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 2.3e-97 359.0 198 91.9
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 4.3e-91 338.2 198 86.9
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 4.9e-87 324.7 198 83.8
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 1.6e-85 319.7 198 83.3
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 3.9e-84 315.1 199 82.9
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 2.4e-81 305.8 192 81.2
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 2.9e-79 298.9 192 80.2
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 8.4e-79 297.4 199 77.9
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 9.3e-78 293.9 192 79.2
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 1.7e-76 289.7 193 79.8
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 6.4e-71 271.2 184 75.5
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 2.5e-67 259.2 190 71.6
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 5.8e-64 248.1 192 69.8
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 1.2e-61 240.4 191 67.5
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 3.0e-60 235.7 144 80.6
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 6.3e-58 228.0 152 77.0
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 6.3e-58 228.0 144 78.5
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 3.8e-55 218.8 192 60.4
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 1.6e-53 213.4 192 59.4
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 2.7e-53 212.6 177 64.4
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 2.7e-53 212.6 177 64.4
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 2.7e-53 212.6 180 63.3
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 6.1e-53 211.5 190 59.5
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 2.3e-52 209.5 179 59.2
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 3.0e-52 209.1 184 65.8
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 3.0e-52 209.1 184 65.8
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 3.0e-52 209.1 164 67.1
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 3.0e-52 209.1 196 57.1
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 1.5e-51 206.8 189 58.7
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 1.5e-51 206.8 180 61.1
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 5.7e-51 204.9 180 58.9
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 9.7e-51 204.1 166 61.4
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 6.3e-50 201.4 181 60.8
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 2.0e-48 196.4 177 58.8
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 2.6e-48 196.1 161 62.1
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 3.4e-48 195.7 189 52.4
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 4.5e-48 195.3 189 57.1
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 4.5e-48 195.3 190 60.0
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 5.9e-48 194.9 185 57.3
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 5.9e-48 194.9 166 58.4
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 5.9e-48 194.9 166 58.4
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 5.9e-48 194.9 186 58.1
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 7.7e-48 194.5 186 60.2
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 1.0e-47 194.1 186 58.1
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 1.3e-47 193.7 185 55.1
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.3e-47 193.7 158 62.7
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 2.2e-47 193.0 184 53.3
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 2.9e-47 192.6 189 57.1
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 3.8e-47 192.2 184 57.6
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 3.8e-47 192.2 165 62.4
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 5.0e-47 191.8 160 61.9
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 5.0e-47 191.8 198 52.5
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 5.0e-47 191.8 161 59.0
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 5.0e-47 191.8 166 63.3
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 6.5e-47 191.4 185 55.1
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 6.5e-47 191.4 188 56.9
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 8.5e-47 191.0 160 61.2
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 4.2e-46 188.7 190 56.8
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 5.5e-46 188.3 184 56.5
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 7.2e-46 188.0 158 60.8
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 2.1e-45 186.4 189 51.9
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 2.7e-45 186.0 138 70.3
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 2.7e-45 186.0 161 55.9
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 1.4e-44 183.7 149 66.4
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 1.8e-44 183.3 192 52.1
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 6.7e-44 181.4 146 65.1
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 2.0e-43 179.9 180 56.7
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 2.5e-43 179.5 181 55.8
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 7.4e-43 177.9 177 57.1
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 7.4e-43 177.9 181 55.2
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.3e-42 177.2 168 56.0
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 1.7e-42 176.8 140 67.9
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 3.7e-42 175.6 178 52.2
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 3.7e-42 175.6 166 56.6
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 3.7e-42 175.6 158 59.5
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 4.8e-42 175.3 191 50.3
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 1.1e-41 174.1 161 59.0
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 3.1e-41 172.6 180 50.6
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 4.1e-41 172.2 182 53.8
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 5.3e-41 171.8 268 41.8
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 5.3e-41 171.8 159 55.3
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 6.9e-41 171.4 180 51.1
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 6.9e-41 171.4 161 58.4
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 9.1e-41 171.0 181 54.7
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 1.2e-40 170.6 162 56.8
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 2.0e-40 169.9 179 54.2
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 2.6e-40 169.5 161 58.4
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 3.4e-40 169.1 189 47.1
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 4.5e-40 168.7 181 53.0
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 5.9e-40 168.3 189 51.9
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 1.3e-39 167.2 170 55.9
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 1.7e-39 166.8 137 62.0
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 3.8e-39 165.6 168 51.2
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 3.8e-39 165.6 146 61.6
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 5.0e-39 165.2 185 50.8
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 6.5e-39 164.9 149 57.0
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 8.5e-39 164.5 168 53.0
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 8.5e-39 164.5 168 53.0
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 8.5e-39 164.5 168 53.0
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 8.5e-39 164.5 183 51.9
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 1.4e-36 157.1 134 59.7
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 1.5e-35 153.7 140 63.6
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 1.8e-33 146.7 124 59.7
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 4.1e-33 145.6 166 48.2
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 5.3e-33 145.2 126 58.7
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.6e-32 143.7 176 45.5
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 2.6e-32 142.9 201 42.8
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 1.7e-31 140.2 159 48.4
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 2.2e-31 139.8 157 49.7
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 7.2e-30 134.8 144 52.8
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 1.7e-26 123.6 148 48.6
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 4.8e-26 122.1 159 44.7
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 4.8e-26 122.1 183 39.9
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 8.2e-26 121.3 119 58.0
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 1.2e-24 117.5 135 48.1
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 1.2e-21 107.5 89 60.7
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 1.0e-20 104.4 104 54.8
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 1.8e-20 103.6 110 53.6
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 7.5e-19 98.2 118 53.4
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.8e-17 93.6 73 58.9
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 3.1e-17 92.8 91 54.9
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 3.1e-17 92.8 162 37.0
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 4.1e-17 92.4 173 37.0
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 1.6e-16 90.5 119 44.5
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 2.7e-16 89.7 59 72.9
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 6.1e-13 78.6 110 42.7
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 2.8e-10 69.7 74 51.4
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 6.3e-10 68.6 69 53.6
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 5.6e-06 55.5 103 39.8
C02p33000 Brassica napus HOM05D005768 ORTHO05D041760 7.3e-06 55.1 43 65.1
BolC2t09396H Brassica oleracea HOM05D005768 ORTHO05D041760 7.3e-06 55.1 43 65.1
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 7.3e-06 55.1 110 35.5


User provided reference genes

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