Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G33790 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 0.0e+00 1145.2 561 100.0
AT1G20795 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.5e-157 560.5 415 71.1
AT1G20800 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.0e-121 441.4 434 59.2
Carub.0001s2024 Capsella rubella HOM05D007494 ORTHO05D009621 1.3e-105 387.9 422 52.4
AL5G30530 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 5.3e-102 375.9 442 51.1
Sp1g18490 Schrenkiella parvula HOM05D007494 ORTHO05D009621 4.6e-98 362.8 370 52.4
Thhalv10009430m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 9.6e-96 355.1 372 51.9
Thhalv10011090m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 8.1e-95 352.1 426 50.0
AL1G67140 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 6.9e-94 349.0 370 53.2
BcaB01g00617 Brassica carinata HOM05D007494 ORTHO05D009621 5.8e-93 345.9 424 49.3
Thhalv10015953m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 3.8e-92 343.2 366 51.4
AT1G20790 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 6.0e-90 335.9 375 51.7
C08p20370 Brassica napus HOM05D007494 ORTHO05D009621 4.8e-87 326.2 368 47.0
BolC8t49665H Brassica oleracea HOM05D007494 ORTHO05D009621 4.8e-87 326.2 368 47.0
BcaC07g39053 Brassica carinata HOM05D007494 ORTHO05D009621 6.9e-86 322.4 368 46.7
Carub.0001s2025 Capsella rubella HOM05D007494 ORTHO05D009621 6.9e-86 322.4 443 46.7
C08p25440 Brassica napus HOM05D007494 ORTHO05D009621 1.1e-83 315.1 414 46.9
A08p29250 Brassica napus HOM05D007494 ORTHO05D009621 3.2e-83 313.5 367 46.6
A09p43410 Brassica napus HOM05D007494 ORTHO05D009621 4.2e-83 313.2 404 48.3
BcaB03g12853 Brassica carinata HOM05D007494 ORTHO05D009621 2.1e-82 310.8 395 45.1
BcaB07g30752 Brassica carinata HOM05D007494 ORTHO05D009621 2.7e-82 310.5 368 46.2
BraA08t34860Z Brassica rapa HOM05D007494 ORTHO05D009621 2.7e-82 310.5 367 46.0
C08p25460 Brassica napus HOM05D007494 ORTHO05D009621 3.5e-82 310.1 405 48.1
BcaC07g39499 Brassica carinata HOM05D007494 ORTHO05D009621 4.6e-82 309.7 406 46.8
BcaC07g39504 Brassica carinata HOM05D007494 ORTHO05D009621 6.0e-82 309.3 397 48.6
C08p25490 Brassica napus HOM05D007494 ORTHO05D009621 6.0e-82 309.3 397 48.6
BraA09t39811Z Brassica rapa HOM05D007494 ORTHO05D009621 1.3e-81 308.1 369 49.6
BraA09t39810Z Brassica rapa HOM05D007494 ORTHO05D009621 3.0e-81 307.0 404 47.8
AT1G57580 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 9.7e-80 302.0 403 45.4
THA.LOC104813281 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 3.1e-78 297.0 412 40.5
BcaB03g13899 Brassica carinata HOM05D007494 ORTHO05D009621 1.1e-75 288.5 368 44.3
Sp5g11780 Schrenkiella parvula HOM05D007494 ORTHO05D009621 1.1e-75 288.5 300 55.7
AL1G45220 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.9e-72 277.7 427 42.4
Aa31LG7G4950 Aethionema arabicum HOM05D007494 ORTHO05D009621 3.7e-71 273.5 399 40.9
Thhalv10012024m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 2.4e-70 270.8 335 46.3
THA.LOC104813247 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 9.1e-70 268.9 365 42.7
AL1G33230 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 2.0e-69 267.7 413 43.8
AT1G20735 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.6e-69 267.3 416 43.3
C08p21040 Brassica napus HOM05D007494 ORTHO05D009621 5.0e-68 263.1 404 42.8
BcaC07g39120 Brassica carinata HOM05D007494 ORTHO05D009621 8.5e-68 262.3 407 43.2
AL1G33970 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.6e-66 258.1 402 40.3
BolC8t49740H Brassica oleracea HOM05D007494 ORTHO05D009621 2.1e-66 257.7 404 42.6
BcaB02g08200 Brassica carinata HOM05D007494 ORTHO05D009621 3.6e-66 256.9 336 44.6
AT1G20940 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.3e-65 254.2 417 41.0
BcaB03g11879 Brassica carinata HOM05D007494 ORTHO05D009621 5.1e-65 253.1 406 41.4
BolC8t50168H Brassica oleracea HOM05D007494 ORTHO05D009621 8.8e-65 252.3 396 42.2
BraA08t34811Z Brassica rapa HOM05D007494 ORTHO05D009621 8.8e-65 252.3 392 42.3
A08p28830 Brassica napus HOM05D007494 ORTHO05D009621 1.5e-64 251.5 392 42.3
BcaB03g12780 Brassica carinata HOM05D007494 ORTHO05D009621 3.4e-61 240.4 412 40.8
Carub.0005s1178 Capsella rubella HOM05D007494 ORTHO05D009621 4.5e-61 240.0 393 43.0
BraA03t11134Z Brassica rapa HOM05D007494 ORTHO05D009621 7.7e-61 239.2 406 41.6
A03p18740 Brassica napus HOM05D007494 ORTHO05D009621 1.7e-60 238.0 407 41.3
Carub.0001s2057 Capsella rubella HOM05D007494 ORTHO05D009621 1.9e-59 234.6 424 40.3
Carub.0004s0895 Capsella rubella HOM05D007494 ORTHO05D009621 3.6e-58 230.3 384 39.8
AT1G20240 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 4.7e-58 229.9 360 43.1
Aa31LG8G15360 Aethionema arabicum HOM05D007494 ORTHO05D009621 6.1e-58 229.6 315 43.2
BolC8t49745H Brassica oleracea HOM05D007494 ORTHO05D009621 3.9e-57 226.9 322 46.0
AT1G20360 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.1e-56 225.3 298 48.3
Aa31LG7G4960 Aethionema arabicum HOM05D007494 ORTHO05D009621 2.6e-56 224.2 400 37.0
AT1G57565 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.2e-52 211.1 193 54.4
BolC8t50166H Brassica oleracea HOM05D007494 ORTHO05D009621 2.5e-51 207.6 315 42.5
BolC8t50169H Brassica oleracea HOM05D007494 ORTHO05D009621 2.5e-51 207.6 258 50.0
Thhalv10012172m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 4.2e-51 206.8 399 34.8
A09p43390 Brassica napus HOM05D007494 ORTHO05D009621 6.1e-50 203.0 226 50.9
Carub.0001s1977 Capsella rubella HOM05D007494 ORTHO05D009621 6.1e-50 203.0 279 47.3
C08p21030 Brassica napus HOM05D007494 ORTHO05D009621 3.0e-49 200.7 251 48.6
Aa31LG8G15370 Aethionema arabicum HOM05D007494 ORTHO05D009621 1.2e-48 198.7 343 37.6
THA.LOC104813248 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 3.7e-47 193.7 405 32.3
BcaC07g39500 Brassica carinata HOM05D007494 ORTHO05D009621 1.2e-45 188.7 194 52.6
Thhalv10012236m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 2.9e-44 184.1 342 36.5
AT1G20690 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.5e-43 181.0 224 49.6
Thhalv10011940m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 4.7e-42 176.8 342 34.8
Thhalv10012123m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.8e-41 174.9 278 39.9
BcaC07g39114 Brassica carinata HOM05D007494 ORTHO05D009621 3.4e-40 170.6 395 34.2
BcaC07g39502 Brassica carinata HOM05D007494 ORTHO05D009621 9.8e-40 169.1 204 49.5
C08p25470 Brassica napus HOM05D007494 ORTHO05D009621 9.8e-40 169.1 204 49.5
CARHR020740 Cardamine hirsuta HOM05D007494 ORTHO05D009621 1.7e-39 168.3 269 41.3
Thhalv10012136m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.0e-36 159.1 324 33.0
A09p43460 Brassica napus HOM05D007494 ORTHO05D009621 1.6e-34 151.8 285 37.2
AL1G33090 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 4.4e-32 143.7 222 44.6
QL02p015450 Quercus lobata HOM05D007494 ORTHO05D009621 1.4e-30 138.7 386 32.1
Sp1g18390 Schrenkiella parvula HOM05D007494 ORTHO05D009621 7.8e-29 132.9 191 42.4
BcaB01g00618 Brassica carinata HOM05D007494 ORTHO05D009621 2.9e-28 131.0 229 41.0
AL1G33800 Arabidopsis lyrata HOM05D013746 ORTHO05D015945 1.5e-27 128.6 118 62.7
Aa31LG8G15340 Aethionema arabicum HOM05D007494 ORTHO05D009621 3.4e-24 117.5 166 45.2
AT1G20803 Arabidopsis thaliana HOM05D013746 ORTHO05D015945 1.4e-22 112.1 117 54.7
A09p43420 Brassica napus HOM05D007494 ORTHO05D009621 2.4e-22 111.3 104 51.9
AT1G20290 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 4.6e-21 107.1 187 40.1
BraA09t39809Z Brassica rapa HOM05D007494 ORTHO05D009621 1.0e-20 105.9 104 51.9
BraA09t39808Z Brassica rapa HOM05D007494 ORTHO05D009621 2.8e-18 97.8 113 51.3
AL1G32830 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 5.8e-16 90.1 65 70.8
C08p21080 Brassica napus HOM05D007494 ORTHO05D009621 1.2e-13 82.4 117 43.6
BcaC07g39503 Brassica carinata HOM05D007494 ORTHO05D032917 4.6e-13 80.5 134 38.8
C08p25480 Brassica napus HOM05D007494 ORTHO05D032917 4.6e-13 80.5 134 38.8
Duzib041G0294 Durio zibethinus HOM05D007494 ORTHO05D009621 6.6e-12 76.6 269 27.1
AL8G44280 Arabidopsis lyrata HOM05D000015 ORTHO05D000734 5.6e-11 73.6 84 50.0
Oeu004534.1 Olea europaea HOM05D008697 ORTHO05D010866 3.6e-10 70.9 355 24.2
A08p29240 Brassica napus HOM05D013746 ORTHO05D015945 1.1e-09 69.3 43 74.4
BraA08t34859Z Brassica rapa HOM05D013746 ORTHO05D015945 1.1e-09 69.3 43 74.4
A06p16790 Brassica napus HOM05D013746 ORTHO05D015945 3.1e-09 67.8 43 76.7
BraA06t24786Z Brassica rapa HOM05D013746 ORTHO05D015945 3.1e-09 67.8 43 76.7
Nitab4.5_0005200g0080 Nicotiana tabacum HOM05D008697 ORTHO05D010866 3.1e-09 67.8 151 28.5
BcaC05g25981 Brassica carinata HOM05D013746 ORTHO05D015945 6.8e-09 66.6 43 74.4
C05p19350 Brassica napus HOM05D013746 ORTHO05D015945 6.8e-09 66.6 43 74.4
BolC5t30638H Brassica oleracea HOM05D013746 ORTHO05D015945 6.8e-09 66.6 43 74.4
BcaB03g12852 Brassica carinata HOM05D013746 ORTHO05D015945 8.9e-09 66.2 43 72.1
BraA08t34812Z Brassica rapa HOM05D007494 ORTHO05D009621 4.4e-08 63.9 47 68.1
Thecc.08G063600 Theobroma cacao HOM05D007494 ORTHO05D009621 1.3e-07 62.4 133 29.3
BcaB07g32072 Brassica carinata HOM05D013746 ORTHO05D015945 2.2e-07 61.6 43 72.1
Cc04_g08540 Coffea canephora HOM05D002420 ORTHO05D002422 2.2e-07 61.6 315 24.8
PGSC0003DMG400015217 Solanum tuberosum HOM05D008697 ORTHO05D010866 2.2e-07 61.6 237 26.6
PGSC0003DMG400015218 Solanum tuberosum HOM05D008697 ORTHO05D010923 4.9e-07 60.5 156 28.2
CAN.G1909.14 Capsicum annuum HOM05D008697 ORTHO05D010866 6.4e-07 60.1 156 32.7
CAN.G1631.9 Capsicum annuum HOM05D008697 ORTHO05D010866 8.3e-07 59.7 163 27.0
Peaxi162Scf00171g00630 Petunia axillaris HOM05D008697 ORTHO05D010866 8.3e-07 59.7 245 25.3
Oeu008441.1 Olea europaea HOM05D008697 ORTHO05D010866 1.1e-06 59.3 214 26.2
arahy.Tifrunner.gnm1.ann1.6LG1IJ Arachis hypogaea HOM05D002420 ORTHO05D002422 1.4e-06 58.9 287 25.1
QL03p004281 Quercus lobata HOM05D008697 ORTHO05D010866 1.4e-06 58.9 266 23.7
PGSC0003DMG400015282 Solanum tuberosum HOM05D008697 ORTHO05D010866 1.9e-06 58.5 393 20.9
A10p21580 Brassica napus HOM05D001738 ORTHO05D001644 2.4e-06 58.2 250 26.8


User provided reference genes

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