Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 3.4e-176 621.7 342 100.0
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 1.2e-154 550.1 343 90.1
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 5.8e-136 488.0 344 82.0
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 4.9e-135 485.0 342 79.8
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 6.4e-135 484.6 342 78.7
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 1.2e-133 480.3 342 75.4
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 1.6e-117 426.8 343 71.1
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 6.0e-117 424.9 342 69.0
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 8.7e-116 421.0 342 70.2
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 1.3e-114 417.2 341 68.6
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 9.3e-110 401.0 340 67.1
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 6.0e-109 398.3 365 63.3
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 5.1e-108 395.2 339 67.3
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 5.1e-108 395.2 365 63.0
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 4.3e-107 392.1 342 64.0
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 3.1e-105 386.0 343 65.9
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 5.3e-105 385.2 343 65.9
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 6.9e-105 384.8 344 66.0
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 7.7e-88 328.2 344 55.2
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.3e-87 327.4 342 55.8
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 1.5e-80 303.9 220 73.2
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 1.4e-65 254.2 363 43.3
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 5.3e-65 252.3 363 42.7
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.0e-63 248.1 363 42.7
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 2.9e-63 246.5 363 42.4
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 3.8e-63 246.1 353 42.2
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 3.2e-62 243.0 364 41.5
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 1.4e-60 237.7 362 40.9
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 6.8e-60 235.3 363 40.8
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 1.3e-58 231.1 309 43.0
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 1.3e-58 231.1 352 40.1
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 3.7e-58 229.6 351 42.2
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 3.7e-58 229.6 377 42.4
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.1e-57 228.0 345 42.0
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 5.0e-55 219.2 350 38.6
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.1e-54 218.0 298 42.6
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 1.9e-54 217.2 295 44.7
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 4.2e-54 216.1 349 41.0
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 1.2e-53 214.5 359 39.3
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 2.1e-53 213.8 356 40.2
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 6.1e-53 212.2 367 38.7
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 5.2e-52 209.1 346 40.2
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 2.6e-51 206.8 365 40.8
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 4.4e-51 206.1 366 37.4
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 3.7e-50 203.0 367 38.1
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 4.9e-50 202.6 355 40.0
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 6.3e-50 202.2 345 39.4
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 6.3e-50 202.2 378 38.4
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 8.3e-50 201.8 361 39.3
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 5.4e-49 199.1 368 37.5
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 9.2e-49 198.4 337 36.5
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 2.0e-48 197.2 347 39.2
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.0e-47 194.9 363 35.5
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.3e-47 193.7 316 38.0
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 3.8e-47 193.0 352 37.8
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 6.6e-47 192.2 316 41.5
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 1.1e-46 191.4 352 37.5
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 1.5e-46 191.0 336 42.6
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 4.3e-46 189.5 353 37.7
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 5.6e-46 189.1 372 34.9
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 1.2e-45 188.0 355 37.5
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 1.6e-45 187.6 329 36.2
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 1.8e-44 184.1 357 36.4
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 1.8e-44 184.1 344 37.8
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 2.3e-44 183.7 344 36.3
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 2.3e-44 183.7 364 36.5
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 1.2e-43 181.4 383 34.7
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 2.0e-43 180.6 344 36.0
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 3.4e-43 179.9 350 35.1
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 4.4e-43 179.5 340 36.2
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 2.2e-42 177.2 364 36.5
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 8.3e-42 175.3 381 34.9
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 4.1e-41 172.9 367 37.1
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 5.4e-41 172.6 362 35.6
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 7.0e-41 172.2 207 45.4
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 1.6e-40 171.0 361 34.6
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 2.0e-40 170.6 362 35.4
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 4.6e-40 169.5 245 40.8
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 6.0e-40 169.1 372 34.1
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 7.8e-40 168.7 347 35.2
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 2.3e-39 167.2 357 35.9
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 3.0e-39 166.8 360 35.0
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 1.1e-38 164.9 360 35.6
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 3.3e-38 163.3 361 32.7
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 4.3e-38 162.9 341 35.5
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 4.3e-38 162.9 320 34.1
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 1.2e-37 161.4 329 32.8
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 2.1e-37 160.6 299 37.5
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 4.7e-37 159.5 344 31.7
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 8.0e-37 158.7 403 32.0
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 2.3e-36 157.1 336 34.5
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 8.9e-36 155.2 357 35.9
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 1.2e-35 154.8 362 32.3
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 2.6e-35 153.7 313 35.8
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 5.8e-35 152.5 338 31.4
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 9.8e-35 151.8 270 36.3
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 2.9e-34 150.2 367 32.4
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 3.7e-34 149.8 268 35.8
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 3.9e-31 139.8 364 34.6
BcaB08g36328 Brassica carinata HOM05D005472 ORTHO05D005897 9.5e-30 135.2 135 55.6
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 1.6e-29 134.4 283 36.7
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 2.8e-29 133.7 310 31.9
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 3.6e-29 133.3 245 35.1
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 4.0e-28 129.8 323 31.3
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 5.2e-28 129.4 301 34.2
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 8.9e-28 128.6 312 34.0
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 8.9e-28 128.6 346 30.6
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 2.0e-27 127.5 342 31.9
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 3.4e-27 126.7 331 28.4
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 5.8e-27 125.9 293 32.1
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 5.8e-27 125.9 295 30.5
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 9.9e-27 125.2 361 33.0
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 3.7e-26 123.2 356 33.4
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 3.7e-26 123.2 361 32.1
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 1.6e-24 117.9 346 32.4
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 6.0e-24 115.9 335 29.9
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 1.0e-23 115.2 366 29.5
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 1.8e-20 104.4 263 33.1
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.8e-20 104.4 171 38.6
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 2.4e-20 104.0 367 28.3
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 2.4e-20 104.0 262 34.4
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 6.8e-20 102.4 362 31.5
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 1.5e-19 101.3 363 31.4
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 4.4e-19 99.8 252 29.4
BcaB08g37342 Brassica carinata HOM05D005472 ORTHO05D005897 2.2e-18 97.4 56 80.4
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 2.9e-18 97.1 365 31.5
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 5.4e-17 92.8 285 25.3
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 9.2e-17 92.0 223 29.6
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 2.7e-16 90.5 144 39.6
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 3.5e-16 90.1 369 27.1
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 4.6e-16 89.7 321 30.5
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 7.8e-16 89.0 197 27.4
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 1.1e-14 85.1 400 26.0
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 9.6e-14 82.0 167 35.9
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 1.1e-12 78.6 239 30.1
Aqoxy2G01737 Aquilegia oxysepala HOM05D017957 ORTHO05D005897 9.0e-12 75.5 226 26.1
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 1.2e-11 75.1 367 25.3
Zm00001eb121210 Zea mays HOM05D005472 ORTHO05D005897 2.7e-08 63.9 220 28.6
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 3.5e-08 63.5 105 28.6
SMO351G0278 Selaginella moellendorffii HOM05D029214 ORTHO05D026603 1.3e-07 61.6 228 24.6
MBI09_g43704_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 1.7e-07 61.2 107 35.5
A07p16080 Brassica napus HOM05D005472 ORTHO05D005897 3.0e-07 60.5 53 67.9


User provided reference genes

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