Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G32690 Arabidopsis lyrata HOM05D007355 ORTHO05D009343 8.0e-45 183.3 90 100.0
Carub.0001s1949 Capsella rubella HOM05D007355 ORTHO05D009343 1.1e-30 136.3 71 93.0
Thhalv10009918m.g Eutrema salsugineum HOM05D007355 ORTHO05D009343 1.9e-30 135.6 97 76.3
Sp1g17750 Schrenkiella parvula HOM05D007355 ORTHO05D009343 4.3e-30 134.4 99 74.7
A08p29560 Brassica napus HOM05D007355 ORTHO05D009343 1.6e-29 132.5 98 74.5
C08p19840 Brassica napus HOM05D007355 ORTHO05D009343 1.6e-29 132.5 98 74.5
BolC8t49623H Brassica oleracea HOM05D007355 ORTHO05D009343 1.6e-29 132.5 98 74.5
BraA08t34894Z Brassica rapa HOM05D007355 ORTHO05D009343 1.6e-29 132.5 98 74.5
BcaC07g39013 Brassica carinata HOM05D007355 ORTHO05D009343 2.3e-28 128.6 98 73.5
CARHR020450 Cardamine hirsuta HOM05D007355 ORTHO05D009343 3.1e-28 128.3 92 72.8
BcaB03g14421 Brassica carinata HOM05D007355 ORTHO05D009343 6.4e-26 120.6 100 70.0
BcaB03g12886 Brassica carinata HOM05D007355 ORTHO05D009343 1.9e-22 109.0 101 63.4
Ciclev10003277m.g Citrus clementina HOM05D007355 ORTHO05D009343 3.8e-18 94.7 75 61.3
AL2G35700 Arabidopsis lyrata HOM05D007355 ORTHO05D009343 6.4e-18 94.0 97 60.8
C06p49660 Brassica napus HOM05D007355 ORTHO05D009343 6.4e-18 94.0 96 63.5
BolC6t40005H Brassica oleracea HOM05D007355 ORTHO05D009343 6.4e-18 94.0 96 63.5
FAN15G2202 Fragaria x ananassa HOM05D007355 ORTHO05D009343 1.1e-17 93.2 85 55.3
FAN27G0012 Fragaria x ananassa HOM05D007355 ORTHO05D009343 1.1e-17 93.2 85 55.3
BcaC08g47049 Brassica carinata HOM05D007355 ORTHO05D009343 3.2e-17 91.7 96 60.4
FAN20G0162 Fragaria x ananassa HOM05D007355 ORTHO05D009343 5.4e-17 90.9 82 56.1
Gorai.009G194900 Gossypium raimondii HOM05D007355 ORTHO05D009343 5.4e-17 90.9 75 58.7
BcaB03g14350 Brassica carinata HOM05D007355 ORTHO05D009343 1.2e-16 89.7 82 63.4
A07p41240 Brassica napus HOM05D007355 ORTHO05D009343 1.6e-16 89.4 96 60.4
BraA07t31659Z Brassica rapa HOM05D007355 ORTHO05D009343 1.6e-16 89.4 96 60.4
Manes.18G014200 Manihot esculenta HOM05D007355 ORTHO05D009343 1.6e-16 89.4 78 61.5
THA.LOC104814032 Tarenaya hassleriana HOM05D007355 ORTHO05D009343 1.6e-16 89.4 102 55.9
Gohir.D05G189650 Gossypium hirsutum HOM05D007355 ORTHO05D009343 4.6e-16 87.8 75 57.3
CiPaw.08G065900 Carya illinoinensis HOM05D007355 ORTHO05D009343 1.3e-15 86.3 79 57.0
Thhalv10019842m.g Eutrema salsugineum HOM05D007355 ORTHO05D009343 1.3e-15 86.3 98 57.1
QL02p011487 Quercus lobata HOM05D007355 ORTHO05D009343 1.7e-15 85.9 76 56.6
Sabra05G0184200 Salix brachista HOM05D007355 ORTHO05D009343 1.7e-15 85.9 75 61.3
Duzib093G0416 Durio zibethinus HOM05D007355 ORTHO05D009343 2.3e-15 85.5 75 58.7
Thecc.08G043500 Theobroma cacao HOM05D007355 ORTHO05D009343 2.3e-15 85.5 75 58.7
AT1G75717 Arabidopsis thaliana HOM05D007355 ORTHO05D009343 3.0e-15 85.1 97 56.7
Gohir.A05G186732 Gossypium hirsutum HOM05D007355 ORTHO05D009343 3.9e-15 84.7 75 56.0
VMungo1309G0669 Vigna mungo HOM05D007355 ORTHO05D009343 5.1e-15 84.3 75 58.7
Potri.005G238400 Populus trichocarpa HOM05D007355 ORTHO05D009343 6.6e-15 84.0 75 58.7
Ca_13424_v3 Cicer arietinum L. HOM05D007355 ORTHO05D009343 1.9e-14 82.4 71 59.2
Ca_13425_v3 Cicer arietinum L. HOM05D007355 ORTHO05D009343 1.9e-14 82.4 71 59.2
BcaC08g45561 Brassica carinata HOM05D007355 ORTHO05D009343 2.5e-14 82.0 99 55.6
Cpa.g.sc26.34 Carica papaya HOM05D007355 ORTHO05D009343 2.5e-14 82.0 86 52.3
Gohir.A05G257150 Gossypium hirsutum HOM05D007355 ORTHO05D009343 2.5e-14 82.0 80 56.2
Gorai.009G270200 Gossypium raimondii HOM05D007355 ORTHO05D009343 2.5e-14 82.0 80 56.2
MD15G1013100 Malus domestica HOM05D007355 ORTHO05D009343 2.5e-14 82.0 82 54.9
Haze_22626 Corylus avellana HOM05D007355 ORTHO05D009343 3.3e-14 81.6 75 56.0
Lalb_Chr14g0369841 Lupinus albus HOM05D007355 ORTHO05D009343 3.3e-14 81.6 75 56.0
Carub.0002s2256 Capsella rubella HOM05D007355 ORTHO05D009343 4.3e-14 81.3 96 55.2
C06p32480 Brassica napus HOM05D007355 ORTHO05D009343 5.6e-14 80.9 99 55.6
BolC6t38371H Brassica oleracea HOM05D007355 ORTHO05D009343 5.6e-14 80.9 99 55.6
COL.COLO4_26156 Corchorus olitorius HOM05D007355 ORTHO05D009343 5.6e-14 80.9 80 58.8
Manes.05G148200 Manihot esculenta HOM05D007355 ORTHO05D009343 5.6e-14 80.9 76 56.6
Lj5g0016063 Lotus japonicus HOM05D007355 ORTHO05D009343 7.3e-14 80.5 84 56.0
PGR083G2600 Punica granatum HOM05D007355 ORTHO05D009343 7.3e-14 80.5 77 57.1
BcaB02g07039 Brassica carinata HOM05D007355 ORTHO05D009343 9.6e-14 80.1 81 60.5
Gohir.D05G258650 Gossypium hirsutum HOM05D007355 ORTHO05D009343 9.6e-14 80.1 76 55.3
DCAR_017465 Daucus carota HOM05D007355 ORTHO05D009343 1.2e-13 79.7 80 52.5
Peaxi162Scf00400g00042 Petunia axillaris HOM05D007355 ORTHO05D009343 1.2e-13 79.7 85 52.9
Actinidia37930 Actinidia chinensis HOM05D007355 ORTHO05D009343 1.6e-13 79.3 77 54.5
Glyma.06G024800 Glycine max HOM05D007355 ORTHO05D009343 1.6e-13 79.3 76 57.9
Aa31LG4G5940 Aethionema arabicum HOM05D007355 ORTHO05D009343 2.1e-13 79.0 94 53.2
CARHR069120 Cardamine hirsuta HOM05D007355 ORTHO05D009343 2.1e-13 79.0 95 55.8
Glyma.04G024700 Glycine max HOM05D007355 ORTHO05D009343 2.1e-13 79.0 76 59.2
Prupe.1G366200 Prunus persica HOM05D007355 ORTHO05D009343 2.1e-13 79.0 88 50.0
Dinv39511 Davidia involucrata HOM05D007355 ORTHO05D009343 2.8e-13 78.6 94 46.8
Phvul.009G016500 Phaseolus vulgaris HOM05D007355 ORTHO05D009343 2.8e-13 78.6 75 57.3
Cfa013942 Carpinus fangiana HOM05D007355 ORTHO05D009343 8.1e-13 77.0 77 55.8
Gohir.D06G000500 Gossypium hirsutum HOM05D007355 ORTHO05D009343 8.1e-13 77.0 72 58.3
Gorai.010G004900 Gossypium raimondii HOM05D007355 ORTHO05D009343 8.1e-13 77.0 72 58.3
arahy.Tifrunner.gnm1.ann1.Y2NNQI Arachis hypogaea HOM05D007355 ORTHO05D009343 1.8e-12 75.9 80 56.2
Gohir.A06G004700 Gossypium hirsutum HOM05D007355 ORTHO05D009343 1.8e-12 75.9 72 56.9
Lsat_1_v5_gn_2_9841 Lactuca sativa HOM05D007355 ORTHO05D009343 1.8e-12 75.9 86 45.3
Solyc04g081380.1 Solanum lycopersicum HOM05D007355 ORTHO05D009343 2.4e-12 75.5 86 52.3
TAR625G0791 Trochodendron aralioides HOM05D007355 ORTHO05D009343 2.4e-12 75.5 75 53.3
arahy.Tifrunner.gnm1.ann1.PADY8Y Arachis hypogaea HOM05D007355 ORTHO05D009343 3.1e-12 75.1 82 54.9
PGSC0003DMG400009860 Solanum tuberosum HOM05D007355 ORTHO05D009343 3.1e-12 75.1 86 51.2
TPR.G26402 Trifolium pratense HOM05D007355 ORTHO05D009343 4.0e-12 74.7 74 60.8
Ah.11g039070 Amaranthus hybridus HOM05D007355 ORTHO05D009343 9.0e-12 73.6 82 48.8
CSS0013130 Camellia sinensis var. sinensis HOM05D007355 ORTHO05D009343 9.0e-12 73.6 77 50.6
CiPaw.07G150900 Carya illinoinensis HOM05D007355 ORTHO05D009343 1.5e-11 72.8 74 55.4
Nn5g30158 Nelumbo nucifera HOM05D007355 ORTHO05D009343 2.6e-11 72.0 77 53.2
Sed0019478 Sechium edule HOM05D007355 ORTHO05D009343 2.6e-11 72.0 75 53.3
Lj1g0016145 Lotus japonicus HOM05D007355 ORTHO05D009343 3.4e-11 71.6 76 53.9
Lalb_Chr22g0354351 Lupinus albus HOM05D007355 ORTHO05D009343 3.4e-11 71.6 77 51.9
ClCG05G018320 Citrullus lanatus HOM05D007355 ORTHO05D009343 4.4e-11 71.2 78 51.3
CsaV3_3G045820 Cucumis sativus L. HOM05D007355 ORTHO05D009343 7.6e-11 70.5 75 49.3
Rhsim07G0246800 Rhododendron simsii HOM05D007355 ORTHO05D009343 9.9e-11 70.1 74 48.6
Aqoxy5G01778 Aquilegia oxysepala HOM05D007355 ORTHO05D009343 1.7e-10 69.3 77 50.6
MBI05_g15356_MAGBIO Magnolia biondii HOM05D007355 ORTHO05D009343 2.2e-10 68.9 76 47.4
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 2.2e-10 68.9 79 49.4
Sed0024841 Sechium edule HOM05D007355 ORTHO05D009343 2.9e-10 68.6 78 51.3
Eucgr.F01645 Eucalyptus grandis HOM05D007355 ORTHO05D009343 4.9e-10 67.8 74 52.7
Medtr1g025150 Medicago truncatula HOM05D007355 ORTHO05D009343 4.9e-10 67.8 71 53.5
DCAR_013865 Daucus carota HOM05D007355 ORTHO05D009343 6.4e-10 67.4 80 43.8
Sc15g0005040 Simmondsia chinensis HOM05D007355 ORTHO05D009343 8.4e-10 67.0 78 50.0
ClCG08G014360 Citrullus lanatus HOM05D007355 ORTHO05D009343 1.1e-09 66.6 74 47.3
MELO3C011006.2 Cucumis melo HOM05D007355 ORTHO05D009343 1.4e-09 66.2 78 47.4
CsaV3_2G029470 Cucumis sativus L. HOM05D007355 ORTHO05D009343 1.9e-09 65.9 74 47.3
Migut.C00824 Erythranthe guttata HOM05D007355 ORTHO05D009343 1.9e-09 65.9 84 48.8
Nn1g05885 Nelumbo nucifera HOM05D007355 ORTHO05D009343 7.1e-09 63.9 75 49.3
SalBow7G4291 Salvia bowleyana HOM05D007355 ORTHO05D009343 9.3e-09 63.5 79 50.6
Atru.chr13.303 Acer truncatum HOM05D007355 ORTHO05D009343 1.2e-08 63.2 68 54.4
Hma1.2p1_0638F.1_g193820 Hydrangea macrophylla HOM05D007355 ORTHO05D009343 1.3e-07 59.7 81 45.7
CAN.G311.23 Capsicum annuum HOM05D007355 ORTHO05D009343 1.9e-06 55.8 53 56.6


User provided reference genes

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