Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 0.0e+00 1185.6 609 100.0
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 0.0e+00 1110.9 611 94.9
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 0.0e+00 1107.4 610 93.6
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 1.2e-293 1012.7 619 85.9
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 7.3e-283 976.9 617 84.4
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 3.6e-282 974.5 617 84.1
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 7.6e-280 966.8 614 84.5
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 7.6e-280 966.8 622 83.4
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 1.9e-275 952.2 617 82.2
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 3.8e-271 937.9 542 89.3
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 2.2e-247 859.0 639 71.8
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 4.2e-246 854.7 641 72.5
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 7.2e-238 827.4 643 70.5
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 6.1e-237 824.3 638 70.5
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 2.0e-235 819.3 633 69.5
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 7.7e-232 807.4 634 70.2
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 3.2e-230 802.0 639 70.3
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 1.4e-220 770.0 628 66.7
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 2.3e-220 769.2 628 66.6
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 9.1e-217 757.3 624 66.8
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 2.2e-215 752.7 670 63.7
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 1.2e-213 746.9 623 66.0
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 4.7e-213 745.0 623 65.8
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 2.0e-211 739.6 630 65.4
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 2.9e-207 725.7 658 61.9
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 7.7e-200 701.0 596 65.6
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 3.4e-187 659.1 654 56.0
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 1.9e-185 653.3 616 56.2
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 2.5e-182 642.9 655 54.0
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 1.2e-181 640.6 656 54.0
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 2.3e-180 636.3 635 54.2
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 6.8e-180 634.8 607 57.2
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 1.5e-179 633.6 639 53.8
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 2.6e-179 632.9 635 52.8
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.6e-179 632.9 637 56.5
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 4.4e-179 632.1 602 57.1
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 9.8e-179 630.9 637 56.4
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 3.7e-178 629.0 669 53.8
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 3.7e-178 629.0 585 56.4
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 4.9e-178 628.6 616 55.5
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 4.9e-178 628.6 651 54.7
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 2.4e-177 626.3 656 54.3
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 4.1e-177 625.5 603 56.9
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 5.4e-177 625.2 637 55.6
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 5.4e-177 625.2 641 54.0
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 7.1e-177 624.8 586 56.3
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 9.2e-177 624.4 587 56.0
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 9.2e-177 624.4 659 53.0
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 9.2e-177 624.4 606 55.6
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 2.7e-176 622.9 644 52.3
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 4.6e-176 622.1 654 53.5
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 4.6e-176 622.1 538 60.0
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 1.3e-175 620.5 653 54.7
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 1.7e-175 620.2 653 54.5
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 1.7e-175 620.2 677 50.5
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 3.0e-175 619.4 657 53.7
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 6.6e-175 618.2 656 53.7
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 8.6e-175 617.8 655 53.4
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 1.1e-174 617.5 585 55.7
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 1.9e-174 616.7 538 59.9
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 1.2e-173 614.0 649 53.8
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 2.8e-173 612.8 605 55.7
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 4.7e-173 612.1 601 56.1
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 4.7e-173 612.1 659 52.7
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 8.1e-173 611.3 535 61.3
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.1e-172 610.9 657 52.2
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.1e-172 610.9 657 52.2
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 1.1e-172 610.9 650 53.7
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 2.3e-172 609.8 600 54.0
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 2.3e-172 609.8 574 56.8
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 5.2e-172 608.6 666 53.8
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 2.9e-170 602.8 551 58.4
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 3.8e-170 602.4 599 55.8
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 3.8e-170 602.4 652 52.0
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 3.8e-170 602.4 665 53.8
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 6.4e-170 601.7 653 53.8
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 1.6e-168 597.0 662 52.1
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 1.3e-167 594.0 653 51.8
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 3.9e-167 592.4 636 52.7
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 3.9e-167 592.4 620 54.4
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 7.1e-161 571.6 666 50.5
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 3.5e-160 569.3 526 57.4
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 7.8e-160 568.2 586 52.9
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 1.3e-159 567.4 599 51.9
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 1.1e-158 564.3 639 49.5
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 1.5e-158 563.9 659 49.6
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 1.5e-158 563.9 645 50.5
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 1.9e-158 563.5 581 53.7
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 1.9e-158 563.5 638 50.9
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 7.3e-158 561.6 657 49.8
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 6.2e-157 558.5 589 52.0
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 8.1e-157 558.1 636 50.5
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 1.8e-156 557.0 643 50.1
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 3.4e-155 552.7 535 54.0
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 9.9e-155 551.2 587 50.4
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 3.2e-153 546.2 367 80.4
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 5.6e-150 535.4 538 52.0
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 5.6e-150 535.4 668 47.9
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 9.6e-150 534.6 521 53.2
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 3.1e-148 529.6 582 49.0
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 2.0e-147 526.9 553 51.5
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 3.4e-147 526.2 582 48.6
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 4.2e-145 519.2 640 46.9
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 9.3e-145 518.1 495 56.4
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 1.2e-144 517.7 587 50.1
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 2.7e-144 516.5 599 49.6
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 1.3e-143 514.2 596 48.8
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 1.8e-143 513.8 637 47.3
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 5.1e-143 512.3 610 47.7
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 6.7e-143 511.9 301 87.0
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 1.0e-138 498.0 564 48.2
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 2.2e-138 496.9 614 44.3
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 1.8e-135 487.3 566 48.8
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 5.1e-135 485.7 599 46.7
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 1.5e-131 474.2 535 49.9
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 3.4e-131 473.0 576 45.3
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 7.6e-131 471.9 660 44.8
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 7.2e-129 465.3 450 55.6
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 1.1e-124 451.4 553 45.6
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 3.1e-124 449.9 605 43.1
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 5.1e-119 432.6 240 90.4
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 3.1e-108 396.7 635 41.3
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 5.5e-105 386.0 547 41.3
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 5.2e-103 379.4 517 41.6
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 5.7e-94 349.4 529 43.3
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 7.5e-94 349.0 218 79.4
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 5.2e-87 326.2 554 37.2
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 1.6e-83 314.7 555 35.9
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 1.2e-80 305.1 455 38.0
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 1.4e-79 301.6 612 33.2
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 2.0e-78 297.7 418 39.7
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 7.0e-68 262.7 311 46.9
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 3.6e-56 223.8 130 85.4
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 1.4e-39 168.7 249 42.2
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 1.3e-18 99.0 546 23.6
BcaC07g37382 Brassica carinata HOM05D005308 ORTHO05D006494 2.3e-10 71.6 64 59.4
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 1.1e-07 62.8 51 60.8
CBR_g49554 Chara braunii HOM05D005308 ORTHO05D006494 5.3e-07 60.5 151 31.1


User provided reference genes

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