Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G31930 Arabidopsis lyrata HOM05D007089 ORTHO05D008959 1.7e-246 855.5 411 100.0
AT1G19340 Arabidopsis thaliana HOM05D007089 ORTHO05D008959 6.3e-222 773.9 413 90.3
Carub.0001s1893 Capsella rubella HOM05D007089 ORTHO05D008959 4.6e-212 741.1 414 86.0
Sp1g17250 Schrenkiella parvula HOM05D007089 ORTHO05D008959 1.6e-209 732.6 415 85.1
BolC5t30479H Brassica oleracea HOM05D007089 ORTHO05D008959 5.1e-203 711.1 415 82.9
BraA06t24662Z Brassica rapa HOM05D007089 ORTHO05D008959 5.6e-202 707.6 414 81.9
A06p15500 Brassica napus HOM05D007089 ORTHO05D008959 1.6e-201 706.1 414 81.6
Thhalv10007768m.g Eutrema salsugineum HOM05D007089 ORTHO05D008959 1.8e-200 702.6 412 82.5
C05p17740 Brassica napus HOM05D007089 ORTHO05D008959 4.1e-197 691.4 416 81.7
Aa31LG7G4040 Aethionema arabicum HOM05D007089 ORTHO05D008959 5.8e-191 671.0 411 78.6
BcaB07g31960 Brassica carinata HOM05D007089 ORTHO05D008959 1.1e-189 666.8 417 78.7
CARHR019930 Cardamine hirsuta HOM05D007089 ORTHO05D008959 5.8e-183 644.4 358 86.0
THA.LOC104809053 Tarenaya hassleriana HOM05D007089 ORTHO05D008959 4.5e-167 591.7 413 70.5
Ciclev10001360m.g Citrus clementina HOM05D007089 ORTHO05D008959 5.9e-143 511.5 406 63.1
Gorai.010G011900 Gossypium raimondii HOM05D007089 ORTHO05D008959 5.0e-142 508.4 411 63.5
Lj4A43T59 Lonicera japonica HOM05D007089 ORTHO05D008959 1.1e-141 507.3 422 59.7
COL.COLO4_26368 Corchorus olitorius HOM05D007089 ORTHO05D008959 7.2e-141 504.6 409 61.9
Gohir.D06G009100 Gossypium hirsutum HOM05D007089 ORTHO05D008959 7.2e-141 504.6 411 63.0
Gohir.A06G011700 Gossypium hirsutum HOM05D007089 ORTHO05D008959 2.1e-140 503.1 411 63.0
Hma1.2p1_0203F.1_g086680 Hydrangea macrophylla HOM05D007089 ORTHO05D008959 1.4e-139 500.4 416 60.1
Cfa018438 Carpinus fangiana HOM05D007089 ORTHO05D008959 1.7e-134 483.4 423 58.2
Atru.chr13.537 Acer truncatum HOM05D007089 ORTHO05D008959 1.6e-132 476.9 411 57.2
Prupe.1G383100 Prunus persica HOM05D007089 ORTHO05D008959 3.6e-132 475.7 419 59.7
CSS0000683 Camellia sinensis var. sinensis HOM05D007089 ORTHO05D008959 6.1e-132 474.9 419 56.6
MSTRG.22295 Avicennia marina HOM05D007089 ORTHO05D008959 8.0e-132 474.6 416 58.4
GSVIVG01009652001 Vitis vinifera HOM05D007089 ORTHO05D008959 1.0e-131 474.2 418 57.9
Oeu015592.2 Olea europaea HOM05D007089 ORTHO05D008959 2.3e-131 473.0 444 55.0
Manes.05G163100 Manihot esculenta HOM05D007089 ORTHO05D008959 5.2e-131 471.9 421 57.5
CiPaw.09G208600 Carya illinoinensis HOM05D007089 ORTHO05D008959 1.5e-130 470.3 419 58.2
Migut.N00515 Erythranthe guttata HOM05D007089 ORTHO05D008959 4.4e-130 468.8 418 56.5
Potri.014G041400 Populus trichocarpa HOM05D007089 ORTHO05D008959 9.7e-130 467.6 407 59.0
Nn1g05102 Nelumbo nucifera HOM05D007089 ORTHO05D008959 1.7e-129 466.8 413 57.1
Sc02g0006440 Simmondsia chinensis HOM05D007089 ORTHO05D008959 4.8e-129 465.3 428 56.5
Glyma.14G077000 Glycine max HOM05D007089 ORTHO05D008959 6.3e-129 464.9 423 56.5
Nitab4.5_0005314g0050 Nicotiana tabacum HOM05D007089 ORTHO05D008959 2.2e-126 456.4 420 56.0
CANSAT25G1057 Cannabis sativa HOM05D007089 ORTHO05D008959 3.8e-126 455.7 413 56.7
PGSC0003DMG400027847 Solanum tuberosum HOM05D007089 ORTHO05D008959 8.5e-126 454.5 414 56.8
Sopen04g033530 Solanum pennellii HOM05D007089 ORTHO05D008959 1.1e-125 454.1 414 56.5
PGR083G0581 Punica granatum HOM05D007089 ORTHO05D008959 3.2e-125 452.6 418 55.7
Lalb_Chr14g0369091 Lupinus albus HOM05D007089 ORTHO05D008959 4.2e-125 452.2 420 54.8
Ca_13340_v3 Cicer arietinum L. HOM05D007089 ORTHO05D008959 1.2e-124 450.7 437 54.0
SalBow8G1187 Salvia bowleyana HOM05D007089 ORTHO05D008959 1.8e-123 446.8 436 53.2
SalBow8G1554 Salvia bowleyana HOM05D007089 ORTHO05D008959 1.8e-123 446.8 436 53.2
Aqoxy5G01701 Aquilegia oxysepala HOM05D007089 ORTHO05D008959 3.0e-123 446.0 421 52.7
ClCG08G015310 Citrullus lanatus HOM05D007089 ORTHO05D008959 3.0e-123 446.0 415 53.3
TPR.G15730 Trifolium pratense HOM05D007089 ORTHO05D008959 6.8e-123 444.9 427 53.6
PSO700G0257 Papaver somniferum HOM05D007089 ORTHO05D008959 1.2e-122 444.1 422 53.3
Medtr1g021985 Medicago truncatula HOM05D007089 ORTHO05D008959 2.0e-122 443.4 422 55.2
Ah.08g217460 Amaranthus hybridus HOM05D007089 ORTHO05D008959 7.5e-122 441.4 434 52.8
VMungo0647G2017 Vigna mungo HOM05D007089 ORTHO05D008959 1.3e-121 440.7 422 52.6
arahy.Tifrunner.gnm1.ann1.4B2PQ4 Arachis hypogaea HOM05D007089 ORTHO05D008959 2.2e-121 439.9 426 53.8
TAR381G0661 Trochodendron aralioides HOM05D007089 ORTHO05D008959 2.2e-121 439.9 417 54.2
SGA_v2.0_scaffold33G13513 Striga asiatica HOM05D007089 ORTHO05D008959 2.8e-121 439.5 428 52.1
Duzib041G0709 Durio zibethinus HOM05D007089 ORTHO05D008959 1.1e-120 437.6 412 56.1
PSO170G0803 Papaver somniferum HOM05D007089 ORTHO05D008959 1.1e-120 437.6 417 53.2
Eucgr.F01540 Eucalyptus grandis HOM05D007089 ORTHO05D008959 1.4e-120 437.2 412 53.4
Psat6g006920 Pisum sativum HOM05D007089 ORTHO05D008959 3.1e-120 436.0 421 53.4
QL02p007525 Quercus lobata HOM05D007089 ORTHO05D008959 1.2e-119 434.1 543 45.5
Haze_17627 Corylus avellana HOM05D007089 ORTHO05D008959 2.0e-119 433.3 420 55.2
RcHm_v2.0_Chr6g0300531 Rosa chinensis HOM05D007089 ORTHO05D008959 3.5e-119 432.6 419 55.4
FvH4_2g40230 Fragaria vesca HOM05D007089 ORTHO05D008959 5.9e-119 431.8 413 54.2
MD04G1062700 Malus domestica HOM05D007089 ORTHO05D008959 1.0e-118 431.0 417 57.1
PSO832G2704 Papaver somniferum HOM05D007089 ORTHO05D008959 1.0e-118 431.0 422 52.4
CAN.G1126.18 Capsicum annuum HOM05D007089 ORTHO05D008959 1.3e-118 430.6 421 52.7
Cc10_g03320 Coffea canephora HOM05D007089 ORTHO05D008959 1.3e-118 430.6 417 53.5
Peaxi162Scf00057g00723 Petunia axillaris HOM05D007089 ORTHO05D008959 1.3e-118 430.6 420 54.3
AUR62025603 Chenopodium quinoa HOM05D007089 ORTHO05D008959 1.7e-118 430.3 461 51.4
HanXRQChr14g0437051 Helianthus annuus HOM05D007089 ORTHO05D008959 5.5e-117 425.2 408 54.2
Rhsim07G0236000 Rhododendron simsii HOM05D007089 ORTHO05D008959 1.6e-116 423.7 466 50.6
Cpa.g.sc64.54 Carica papaya HOM05D007089 ORTHO05D008959 4.7e-116 422.2 322 64.0
FAN15G3100 Fragaria x ananassa HOM05D007089 ORTHO05D008959 8.0e-116 421.4 421 53.2
Solyc04g079950.4 Solanum lycopersicum HOM05D007089 ORTHO05D008959 1.2e-114 417.5 398 53.5
HPP92_020401 Vanilla planifolia HOM05D007089 ORTHO05D008959 4.4e-114 415.6 415 52.0
ATR0733G253 Amborella trichopoda HOM05D007089 ORTHO05D008959 5.7e-114 415.2 420 50.7
vmacro04507 Vaccinium macrocarpon HOM05D007089 ORTHO05D008959 4.1e-112 409.1 431 51.7
arahy.Tifrunner.gnm1.ann1.K9WZZ6 Arachis hypogaea HOM05D007089 ORTHO05D008959 1.1e-109 401.0 426 50.5
Sabra14G0030300 Salix brachista HOM05D007089 ORTHO05D008959 9.5e-109 397.9 361 57.3
unitig_8.g3115 Utricularia gibba HOM05D007089 ORTHO05D008959 8.9e-107 391.3 395 49.6
Os03g0198900 Oryza sativa ssp. japonica HOM05D007089 ORTHO05D008959 1.2e-106 391.0 417 46.8
DCAR_008774 Daucus carota HOM05D007089 ORTHO05D008959 4.4e-106 389.0 375 55.7
AUR62001387 Chenopodium quinoa HOM05D007089 ORTHO05D008959 1.7e-105 387.1 441 49.9
Phvul.001G016200 Phaseolus vulgaris HOM05D007089 ORTHO05D008959 1.6e-103 380.6 373 53.1
EL10Ac7g18245 Beta vulgaris HOM05D007089 ORTHO05D008959 1.9e-101 373.6 436 48.6
Nitab4.5_0000110g0230 Nicotiana tabacum HOM05D007089 ORTHO05D008959 4.3e-101 372.5 376 52.7
MBI16_g26378_MAGBIO Magnolia biondii HOM05D007089 ORTHO05D008959 1.6e-100 370.5 440 48.2
Zm00001eb007930 Zea mays HOM05D007089 ORTHO05D008959 6.2e-100 368.6 416 44.5
CsaV3_2G028500 Cucumis sativus L. HOM05D007089 ORTHO05D008959 9.2e-96 354.8 328 54.3
ECA246G5250 Erigeron canadensis HOM05D007089 ORTHO05D008959 5.6e-93 345.5 334 53.6
Lsat_1_v5_gn_5_30021 Lactuca sativa HOM05D007089 ORTHO05D008959 3.6e-92 342.8 378 48.9
Lj5g0009638 Lotus japonicus HOM05D007089 ORTHO05D008959 1.2e-90 337.8 355 53.0
Mapoly0005s0290 Marchantia polymorpha HOM05D007089 ORTHO05D008959 1.7e-89 334.0 434 43.8
SEGI_17198 Sequoiadendron giganteum HOM05D007089 ORTHO05D008959 1.9e-88 330.5 428 42.8
CDE02G1565 Ceratophyllum demersum HOM05D007089 ORTHO05D008959 4.4e-82 309.3 387 43.9
Pp3c10_21330 Physcomitrium patens HOM05D007089 ORTHO05D008959 1.1e-80 304.7 289 50.5
BcaNung07258 Brassica carinata HOM05D000817 ORTHO05D008959 6.0e-79 298.9 164 84.8
SEGI_08195 Sequoiadendron giganteum HOM05D007089 ORTHO05D008959 1.2e-76 291.2 351 44.4
FAN20G0063 Fragaria x ananassa HOM05D007089 ORTHO05D008959 5.6e-69 265.8 343 46.4
Actinidia29839 Actinidia chinensis HOM05D007089 ORTHO05D008959 3.4e-66 256.5 340 44.4
Actinidia38023 Actinidia chinensis HOM05D007089 ORTHO05D008959 2.8e-60 236.9 354 39.0
SMO358G0064 Selaginella moellendorffii HOM05D007089 ORTHO05D008959 9.3e-56 221.9 194 53.6
Thecc.01G286100 Theobroma cacao HOM05D007089 ORTHO05D008959 1.0e-49 201.8 218 50.5
CBR_g34449 Chara braunii HOM05D007089 ORTHO05D008959 1.9e-48 197.6 388 32.2
AagrBONN_evm.TU.Sc2ySwM_228.1009 Anthoceros agrestis HOM05D007089 ORTHO05D008959 6.7e-46 189.1 223 43.5
MELO3C010924.2 Cucumis melo HOM05D007089 ORTHO05D008959 1.3e-41 174.9 220 44.5
Glyma.17G248801 Glycine max HOM05D007089 ORTHO05D008959 7.2e-24 115.9 87 62.1
FAN27G0845 Fragaria x ananassa HOM05D007089 ORTHO05D008959 3.0e-22 110.5 151 45.0
Thecc.08G022600 Theobroma cacao HOM05D007089 ORTHO05D008959 2.0e-18 97.8 157 44.6
CSS0043770 Camellia sinensis var. sinensis HOM05D007089 ORTHO05D008959 2.2e-17 94.4 162 38.3
Sed0025576 Sechium edule HOM05D007089 ORTHO05D008959 5.5e-16 89.7 98 40.8
Cfa025491 Carpinus fangiana HOM05D007089 ORTHO05D008959 2.2e-12 77.8 199 29.6
BolC8t49566H Brassica oleracea HOM05D040593 ORTHO05D033422 4.2e-08 63.5 34 82.4
BcaB03g14451 Brassica carinata HOM05D000817 ORTHO05D000702 1.8e-06 58.2 27 85.2
BcaC07g41261 Brassica carinata HOM05D000817 ORTHO05D000702 4.0e-06 57.0 29 75.9
C08p42630 Brassica napus HOM05D000817 ORTHO05D000702 4.0e-06 57.0 29 75.9
BolC8t51824H Brassica oleracea HOM05D000817 ORTHO05D000702 4.0e-06 57.0 29 75.9
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 5.2e-06 56.6 100 41.0


User provided reference genes

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