Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G31260 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 2.5e-74 282.0 137 100.0
AL7G30680 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 2.1e-73 278.9 137 99.3
AL6G37990 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 6.2e-73 277.3 137 98.5
AL3G40460 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 2.5e-66 255.4 130 96.2
AL7G24580 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 6.9e-48 194.1 113 87.6
AT4G28030 Arabidopsis thaliana HOM05D005733 ORTHO05D007442 2.0e-47 192.6 113 86.7
CARHR235730 Cardamine hirsuta HOM05D005733 ORTHO05D007442 4.5e-47 191.4 113 85.8
Carub.0007s1276 Capsella rubella HOM05D005733 ORTHO05D007442 5.0e-46 188.0 113 82.3
Thhalv10025984m.g Eutrema salsugineum HOM05D005733 ORTHO05D007442 1.2e-44 183.3 113 82.3
BcaC06g32650 Brassica carinata HOM05D005733 ORTHO05D007442 1.6e-44 183.0 113 81.4
Aa31sc193G30 Aethionema arabicum HOM05D005733 ORTHO05D007442 2.1e-44 182.6 114 80.7
A03p57670 Brassica napus HOM05D005733 ORTHO05D007442 3.6e-44 181.8 113 81.4
C07p55880 Brassica napus HOM05D005733 ORTHO05D007442 3.6e-44 181.8 107 84.1
BraA03t14833Z Brassica rapa HOM05D005733 ORTHO05D007442 3.6e-44 181.8 113 81.4
Aa31LG7G2230 Aethionema arabicum HOM05D005733 ORTHO05D007442 6.1e-44 181.0 114 78.9
Sp7g25980 Schrenkiella parvula HOM05D005733 ORTHO05D007442 7.9e-44 180.6 113 80.5
THA.LOC104811821 Tarenaya hassleriana HOM05D005733 ORTHO05D007442 5.3e-40 167.9 113 74.3
Duzib187G0641 Durio zibethinus HOM05D005733 ORTHO05D007442 9.4e-37 157.1 113 69.9
CiPaw.07G186800 Carya illinoinensis HOM05D005733 ORTHO05D007442 8.8e-35 150.6 113 69.9
Cpa.g.sc75.16 Carica papaya HOM05D005733 ORTHO05D007442 1.1e-34 150.2 108 70.4
Cfa013546 Carpinus fangiana HOM05D005733 ORTHO05D007442 5.7e-34 147.9 113 69.0
Gorai.004G103800 Gossypium raimondii HOM05D005733 ORTHO05D007442 5.7e-34 147.9 113 66.4
COL.COLO4_27474 Corchorus olitorius HOM05D005733 ORTHO05D007442 9.7e-34 147.1 113 63.7
Thecc.09G161700 Theobroma cacao HOM05D005733 ORTHO05D007442 9.7e-34 147.1 113 65.5
TWI63G0727 Tripterygium wilfordii HOM05D005733 ORTHO05D007442 1.3e-33 146.7 113 67.3
Sed0012123 Sechium edule HOM05D005733 ORTHO05D007442 2.2e-33 146.0 113 64.6
SalBow6G0174 Salvia bowleyana HOM05D005733 ORTHO05D007442 4.8e-33 144.8 113 65.5
TAR383G0601 Trochodendron aralioides HOM05D005733 ORTHO05D007442 4.8e-33 144.8 107 69.2
Lj9A728T23 Lonicera japonica HOM05D005733 ORTHO05D007442 8.2e-33 144.1 113 64.6
Haze_22166 Corylus avellana HOM05D005733 ORTHO05D007442 1.1e-32 143.7 103 70.9
CsaV3_7G001070 Cucumis sativus L. HOM05D005733 ORTHO05D007442 1.1e-32 143.7 113 65.5
MD16G1262600 Malus domestica HOM05D005733 ORTHO05D007442 1.1e-32 143.7 104 69.2
Eucgr.C01245 Eucalyptus grandis HOM05D005733 ORTHO05D007442 1.4e-32 143.3 108 68.5
Prupe.1G097300 Prunus persica HOM05D005733 ORTHO05D007442 1.4e-32 143.3 113 65.5
QL02p095666 Quercus lobata HOM05D005733 ORTHO05D007442 1.8e-32 142.9 113 65.5
RcHm_v2.0_Chr4g0404931 Rosa chinensis HOM05D005733 ORTHO05D007442 1.8e-32 142.9 113 65.5
Rhsim01G0012100 Rhododendron simsii HOM05D005733 ORTHO05D007442 2.4e-32 142.5 117 64.1
CANSAT11G0464 Cannabis sativa HOM05D005733 ORTHO05D007442 3.1e-32 142.1 113 63.7
MBI14_g08080_MAGBIO Magnolia biondii HOM05D005733 ORTHO05D007442 4.1e-32 141.7 113 63.7
vmacro13073 Vaccinium macrocarpon HOM05D005733 ORTHO05D007442 4.1e-32 141.7 113 64.6
Hma1.2p1_1531F.1_g289230 Hydrangea macrophylla HOM05D005733 ORTHO05D007442 5.3e-32 141.4 107 67.3
Oeu058827.1 Olea europaea HOM05D005733 ORTHO05D007442 5.3e-32 141.4 113 66.4
Atru.chr7.506 Acer truncatum HOM05D005733 ORTHO05D007442 7.0e-32 141.0 113 65.5
GSVIVG01023749001 Vitis vinifera HOM05D005733 ORTHO05D007442 7.0e-32 141.0 117 63.2
ClCG02G004040 Citrullus lanatus HOM05D005733 ORTHO05D007442 9.1e-32 140.6 104 67.3
MELO3C013348.2 Cucumis melo HOM05D005733 ORTHO05D007442 1.2e-31 140.2 113 64.6
Ciclev10010607m.g Citrus clementina HOM05D005733 ORTHO05D007442 1.5e-31 139.8 104 67.3
EL10Ac8g18867 Beta vulgaris HOM05D005733 ORTHO05D007442 2.0e-31 139.4 113 62.8
Aqoxy7G03235 Aquilegia oxysepala HOM05D005733 ORTHO05D007442 2.6e-31 139.0 113 61.9
arahy.Tifrunner.gnm1.ann1.GE8FUD Arachis hypogaea HOM05D005733 ORTHO05D007442 2.6e-31 139.0 113 64.6
MSTRG.19675 Avicennia marina HOM05D005733 ORTHO05D007442 2.6e-31 139.0 113 61.9
PGR142G3644 Punica granatum HOM05D005733 ORTHO05D007442 2.6e-31 139.0 113 64.6
Glyma.13G091800 Glycine max HOM05D005733 ORTHO05D007442 3.5e-31 138.7 113 63.7
Glyma.17G068500 Glycine max HOM05D005733 ORTHO05D007442 4.5e-31 138.3 113 63.7
arahy.Tifrunner.gnm1.ann1.0JVE27 Arachis hypogaea HOM05D005733 ORTHO05D007442 5.9e-31 137.9 113 64.6
Ca_21184_v3 Cicer arietinum L. HOM05D005733 ORTHO05D007442 5.9e-31 137.9 113 64.6
Cc06_g14000 Coffea canephora HOM05D005733 ORTHO05D007442 7.7e-31 137.5 113 62.8
Actinidia20956 Actinidia chinensis HOM05D005733 ORTHO05D007442 1.0e-30 137.1 113 63.7
CSS0014936 Camellia sinensis var. sinensis HOM05D005733 ORTHO05D007442 1.0e-30 137.1 113 62.8
TPR.G5298 Trifolium pratense HOM05D005733 ORTHO05D007442 1.0e-30 137.1 113 63.7
Migut.J01418 Erythranthe guttata HOM05D005733 ORTHO05D007442 1.3e-30 136.7 104 65.4
Medtr4g129490 Medicago truncatula HOM05D005733 ORTHO05D007442 1.3e-30 136.7 113 63.7
Sc08g0005630 Simmondsia chinensis HOM05D005733 ORTHO05D007442 1.3e-30 136.7 108 63.9
Sabra06G0134700 Salix brachista HOM05D005733 ORTHO05D007442 2.2e-30 136.0 113 63.7
ATR0580G232 Amborella trichopoda HOM05D005733 ORTHO05D007442 2.9e-30 135.6 113 63.7
SGA_v2.0_scaffold66G22515 Striga asiatica HOM05D005733 ORTHO05D007442 2.9e-30 135.6 113 61.1
FAN17G0482 Fragaria x ananassa HOM05D005733 ORTHO05D007442 3.8e-30 135.2 104 65.4
DCAR_014719 Daucus carota HOM05D005733 ORTHO05D007442 8.5e-30 134.0 98 67.3
Lsat_1_v5_gn_8_64360 Lactuca sativa HOM05D005733 ORTHO05D007442 1.1e-29 133.7 113 61.9
Psat4g010480 Pisum sativum HOM05D005733 ORTHO05D007442 1.1e-29 133.7 113 62.8
Psat4g048120 Pisum sativum HOM05D005733 ORTHO05D007442 1.1e-29 133.7 113 62.8
Potri.006G176500 Populus trichocarpa HOM05D005733 ORTHO05D007442 1.1e-29 133.7 113 62.8
Lalb_Chr13g0300531 Lupinus albus HOM05D005733 ORTHO05D007442 1.9e-29 132.9 107 62.6
FvH4_4g23510 Fragaria vesca HOM05D005733 ORTHO05D007442 3.2e-29 132.1 113 61.1
PSO063G5638 Papaver somniferum HOM05D005733 ORTHO05D007442 3.2e-29 132.1 113 59.3
FAN12G3847 Fragaria x ananassa HOM05D005733 ORTHO05D007442 4.2e-29 131.7 113 60.2
VMungo1215G3105 Vigna mungo HOM05D005733 ORTHO05D007442 4.2e-29 131.7 107 62.6
CDE02G3066 Ceratophyllum demersum HOM05D005733 ORTHO05D007442 7.2e-29 131.0 110 60.0
PSO782G5004 Papaver somniferum HOM05D005733 ORTHO05D007442 7.2e-29 131.0 113 58.4
Peaxi162Scf00525g00817 Petunia axillaris HOM05D005733 ORTHO05D007442 9.4e-29 130.6 114 59.6
Manes.06G030000 Manihot esculenta HOM05D005733 ORTHO05D007442 1.2e-28 130.2 98 66.3
Phvul.003G151100 Phaseolus vulgaris HOM05D005733 ORTHO05D007442 1.6e-28 129.8 107 61.7
FAN05G3225 Fragaria x ananassa HOM05D005733 ORTHO05D007442 2.7e-28 129.0 109 61.5
FAN05G4341 Fragaria x ananassa HOM05D005733 ORTHO05D007442 2.7e-28 129.0 109 61.5
Lj4g0011389 Lotus japonicus HOM05D005733 ORTHO05D007442 4.7e-28 128.3 116 62.1
Solyc07g006340.3 Solanum lycopersicum HOM05D005733 ORTHO05D007442 1.4e-27 126.7 104 61.5
Sopen07g002430 Solanum pennellii HOM05D005733 ORTHO05D007442 1.4e-27 126.7 104 61.5
PGSC0003DMG402011224 Solanum tuberosum HOM05D005733 ORTHO05D007442 1.4e-27 126.7 104 61.5
BcaC09g50518 Brassica carinata HOM05D005733 ORTHO05D007442 1.8e-27 126.3 87 74.7
Hund08988 Selenicereus undatus HOM05D005733 ORTHO05D007442 1.8e-27 126.3 114 58.8
CAN.G1870.3 Capsicum annuum HOM05D005733 ORTHO05D007442 3.0e-27 125.6 103 61.2
HanXRQChr10g0284091 Helianthus annuus HOM05D005733 ORTHO05D007442 6.7e-27 124.4 113 59.3
Nitab4.5_0005985g0010 Nicotiana tabacum HOM05D005733 ORTHO05D007442 1.5e-26 123.2 104 58.7
ECA236G1842 Erigeron canadensis HOM05D005733 ORTHO05D007442 5.7e-26 121.3 113 56.6
HPP92_025686 Vanilla planifolia HOM05D005733 ORTHO05D007442 7.4e-26 120.9 107 57.9
Zm00001eb412590 Zea mays HOM05D005733 ORTHO05D007442 4.8e-25 118.2 118 52.5
unitig_0.g187 Utricularia gibba HOM05D005733 ORTHO05D007442 1.4e-24 116.7 132 50.8
Gohir.A08G096462 Gossypium hirsutum HOM05D005733 ORTHO05D007442 2.4e-24 115.9 99 58.6
Ah.14g084100 Amaranthus hybridus HOM05D005733 ORTHO05D007442 1.3e-22 110.2 202 36.6
Cc00_g30300 Coffea canephora HOM05D005733 ORTHO05D007442 6.5e-22 107.8 69 72.5
AUR62028411 Chenopodium quinoa HOM05D005733 ORTHO05D007442 1.1e-21 107.1 78 65.4
AUR62039751 Chenopodium quinoa HOM05D005733 ORTHO05D007442 1.9e-21 106.3 78 64.1
C01p24460 Brassica napus HOM05D005733 ORTHO05D007442 2.3e-19 99.4 67 77.6
CDE05G3532 Ceratophyllum demersum HOM05D001854 ORTHO05D001800 2.6e-18 95.9 63 65.1
Pp3c1_4600 Physcomitrium patens HOM05D005733 ORTHO05D007442 4.4e-18 95.1 102 47.1
Mapoly0019s0038 Marchantia polymorpha HOM05D005733 ORTHO05D007442 1.7e-17 93.2 98 49.0
arahy.Tifrunner.gnm1.ann1.IUS3AS Arachis hypogaea HOM05D005733 ORTHO05D007442 4.8e-17 91.7 71 59.2
Nn4g23704 Nelumbo nucifera HOM05D005733 ORTHO05D007442 6.3e-17 91.3 72 61.1
Gohir.D08G097100 Gossypium hirsutum HOM05D005733 ORTHO05D007442 1.1e-16 90.5 71 64.8
Psat4g048000 Pisum sativum HOM05D005733 ORTHO05D007442 1.1e-16 90.5 74 62.2
arahy.Tifrunner.gnm1.ann1.65BVJ7 Arachis hypogaea HOM05D005733 ORTHO05D007442 2.4e-16 89.4 59 71.2
AagrBONN_evm.TU.Sc2ySwM_344.3527 Anthoceros agrestis HOM05D005733 ORTHO05D007442 4.1e-16 88.6 95 49.5
AL1G53920 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 4.1e-16 88.6 110 50.0
Nitab4.5_0005551g0010 Nicotiana tabacum HOM05D005733 ORTHO05D007442 5.3e-16 88.2 59 66.1
BcaNung01603 Brassica carinata HOM05D007179 ORTHO05D009124 1.1e-13 80.5 84 53.6
BcaC09g50520 Brassica carinata HOM05D005733 ORTHO05D007442 2.5e-13 79.3 83 55.4
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 2.7e-12 75.9 58 58.6
BolC7t46066H Brassica oleracea HOM05D007179 ORTHO05D009124 3.6e-12 75.5 82 56.1
A01p19410 Brassica napus HOM05D007179 ORTHO05D009124 3.0e-11 72.4 84 51.2
BraA01t01881Z Brassica rapa HOM05D007179 ORTHO05D009124 2.6e-10 69.3 84 50.0
SEGI_16930 Sequoiadendron giganteum HOM05D005733 ORTHO05D007442 2.6e-10 69.3 94 39.4
C02p34360 Brassica napus HOM05D005733 ORTHO05D007442 3.4e-10 68.9 83 49.4
BolC2t09466H Brassica oleracea HOM05D005733 ORTHO05D007442 3.4e-10 68.9 81 50.6
Cre02.g084550 Chlamydomonas reinhardtii HOM05D005733 ORTHO05D007442 9.8e-10 67.4 105 40.0
Pp3c11_5280 Physcomitrium patens HOM05D005733 ORTHO05D007442 1.4e-08 63.5 120 34.2
AagrBONN_evm.TU.Sc2ySwM_117.2238 Anthoceros agrestis HOM05D004023 ORTHO05D004681 1.8e-08 63.2 94 38.3
arahy.Tifrunner.gnm1.ann1.SMR3WG Arachis hypogaea HOM05D000783 ORTHO05D015970 2.4e-08 62.8 93 39.8
PRCOL_00005269 Prasinoderma coloniale HOM05D005733 ORTHO05D007442 2.4e-08 62.8 96 39.6
Pp3c12_9920 Physcomitrium patens HOM05D004023 ORTHO05D004681 1.6e-07 60.1 115 32.2
arahy.Tifrunner.gnm1.ann1.3Q9906 Arachis hypogaea HOM05D000783 ORTHO05D015970 1.7e-06 56.6 48 52.1
Lalb_Chr08g0232581 Lupinus albus HOM05D004023 ORTHO05D004681 3.8e-06 55.5 111 37.8
AUR62017796 Chenopodium quinoa HOM05D004023 ORTHO05D004681 6.6e-06 54.7 98 34.7


User provided reference genes

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