Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G30600 Arabidopsis lyrata HOM05D013370 ORTHO05D016580 2.1e-91 339.0 168 100.0
BraA06t24403Z Brassica rapa HOM05D013370 ORTHO05D016580 5.4e-26 121.7 155 45.2
AL1G30590 Arabidopsis lyrata HOM05D014411 ORTHO05D015382 9.1e-26 120.9 133 50.4
A06p12400 Brassica napus HOM05D013370 ORTHO05D016580 9.1e-26 120.9 155 45.2
C05p14670 Brassica napus HOM05D013370 ORTHO05D016580 3.5e-25 119.0 157 44.6
BcaC05g25568 Brassica carinata HOM05D013370 ORTHO05D016580 5.2e-21 105.1 95 52.6
CARHR018730 Cardamine hirsuta HOM05D013370 ORTHO05D015382 1.3e-19 100.5 99 50.5
CARHR011770 Cardamine hirsuta HOM05D014411 ORTHO05D015382 5.4e-18 95.1 162 39.5
Thhalv10008923m.g Eutrema salsugineum HOM05D003879 ORTHO05D003858 2.5e-15 86.3 92 50.0
Sp1g12410 Schrenkiella parvula HOM05D003879 ORTHO05D003858 9.5e-15 84.3 96 46.9
BcaC07g38860 Brassica carinata HOM05D014411 ORTHO05D015382 3.6e-14 82.4 101 41.6
A08p30880 Brassica napus HOM05D014411 ORTHO05D015382 3.6e-14 82.4 142 37.3
C08p18000 Brassica napus HOM05D014411 ORTHO05D015382 3.6e-14 82.4 101 41.6
BolC8t49431H Brassica oleracea HOM05D014411 ORTHO05D015382 3.6e-14 82.4 101 41.6
A08p32120 Brassica napus HOM05D003879 ORTHO05D003858 4.7e-14 82.0 108 43.5
BraA08t35135Z Brassica rapa HOM05D003879 ORTHO05D003858 4.7e-14 82.0 108 43.5
BraA08t35020Z Brassica rapa HOM05D014411 ORTHO05D015382 1.0e-13 80.9 98 42.9
SpUn0238_0010 Schrenkiella parvula HOM05D011464 ORTHO05D014025 1.4e-13 80.5 131 38.2
BcaB03g12996 Brassica carinata HOM05D014411 ORTHO05D015382 5.2e-13 78.6 102 43.1
Carub.0004s2200 Capsella rubella HOM05D003879 ORTHO05D003858 1.5e-12 77.0 94 38.3
BolC5t30187H Brassica oleracea HOM05D013370 ORTHO05D016580 2.0e-12 76.6 117 44.4
C08p19630 Brassica napus HOM05D015260 ORTHO05D003858 3.4e-12 75.9 91 47.3
C05p14660 Brassica napus HOM05D013370 ORTHO05D016580 5.7e-12 75.1 117 43.6
MD06G1002200 Malus domestica HOM05D003879 ORTHO05D003858 1.3e-11 73.9 110 38.2
AL1G25920 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 1.7e-11 73.6 100 41.0
BcaB03g13115 Brassica carinata HOM05D003879 ORTHO05D003858 2.9e-11 72.8 73 49.3
THA.LOC104805175 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 2.9e-11 72.8 94 40.4
Aa31LG1G980 Aethionema arabicum HOM05D003879 ORTHO05D003858 3.7e-11 72.4 112 37.5
CARHR014450 Cardamine hirsuta HOM05D003879 ORTHO05D003858 3.7e-11 72.4 91 44.0
Sp1g12000 Schrenkiella parvula HOM05D011464 ORTHO05D003858 1.1e-10 70.9 99 37.4
A08p32250 Brassica napus HOM05D015260 ORTHO05D003858 1.4e-10 70.5 91 41.8
BcaC07g38717 Brassica carinata HOM05D003879 ORTHO05D003858 1.8e-10 70.1 72 48.6
C08p16470 Brassica napus HOM05D003879 ORTHO05D003858 1.8e-10 70.1 72 48.6
BolC8t49272H Brassica oleracea HOM05D003879 ORTHO05D003858 1.8e-10 70.1 72 48.6
BraA09t40680Z Brassica rapa HOM05D003879 ORTHO05D003858 1.8e-10 70.1 102 44.1
TAR622G1013 Trochodendron aralioides HOM05D003879 ORTHO05D003858 2.4e-10 69.7 146 32.2
AL6G11440 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 3.2e-10 69.3 79 45.6
BcaB02g06632 Brassica carinata HOM05D013370 ORTHO05D016580 4.1e-10 68.9 66 45.5
BcaC07g41607 Brassica carinata HOM05D003879 ORTHO05D003858 4.1e-10 68.9 95 41.1
BolC8t52157H Brassica oleracea HOM05D003879 ORTHO05D003858 4.1e-10 68.9 95 41.1
CDE04G3169 Ceratophyllum demersum HOM05D000406 ORTHO05D007930 5.4e-10 68.6 87 39.1
Nn3g17308 Nelumbo nucifera HOM05D003879 ORTHO05D003858 5.4e-10 68.6 72 45.8
A09p62510 Brassica napus HOM05D003879 ORTHO05D003858 7.0e-10 68.2 94 41.5
BraA09t41615Z Brassica rapa HOM05D003879 ORTHO05D003858 7.0e-10 68.2 105 39.0
Ciclev10033434m.g Citrus clementina HOM05D003879 ORTHO05D003858 7.0e-10 68.2 107 34.6
BraA08t35148Z Brassica rapa HOM05D015260 ORTHO05D003858 9.2e-10 67.8 80 45.0
Carub.0001s1374 Capsella rubella HOM05D003879 ORTHO05D003858 9.2e-10 67.8 138 31.9
Sc04g0007930 Simmondsia chinensis HOM05D003879 ORTHO05D003858 9.2e-10 67.8 99 35.4
THA.LOC104824074 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 9.2e-10 67.8 72 44.4
vmacro16344 Vaccinium macrocarpon HOM05D003879 ORTHO05D003858 9.2e-10 67.8 101 36.6
Atru.chr11.1737 Acer truncatum HOM05D003879 ORTHO05D003858 1.2e-09 67.4 72 44.4
BcaB03g13129 Brassica carinata HOM05D015260 ORTHO05D003858 1.2e-09 67.4 146 34.9
Carub.0001s1375 Capsella rubella HOM05D003879 ORTHO05D003858 1.2e-09 67.4 72 43.1
AL1G24290 Arabidopsis lyrata HOM05D005566 ORTHO05D007534 1.6e-09 67.0 101 37.6
CARHR014430 Cardamine hirsuta HOM05D003879 ORTHO05D003858 1.6e-09 67.0 138 30.4
MBI07_g22385_MAGBIO Magnolia biondii HOM05D003879 ORTHO05D003858 1.6e-09 67.0 85 38.8
Nn5g27527 Nelumbo nucifera HOM05D003879 ORTHO05D003858 1.6e-09 67.0 102 36.3
Psat7g156280 Pisum sativum HOM05D003879 ORTHO05D003858 1.6e-09 67.0 93 38.7
QL03p069280 Quercus lobata HOM05D003879 ORTHO05D003858 2.0e-09 66.6 83 39.8
AL1G25890 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 2.7e-09 66.2 109 35.8
BcaC05g25570 Brassica carinata HOM05D013370 ORTHO05D016580 3.5e-09 65.9 79 48.1
C08p16700 Brassica napus HOM05D015260 ORTHO05D003858 3.5e-09 65.9 80 45.0
Cpa.g.sc171.23 Carica papaya HOM05D003879 ORTHO05D003858 3.5e-09 65.9 72 43.1
Aqoxy5G03435 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 4.6e-09 65.5 79 39.2
AL1G24370 Arabidopsis lyrata HOM05D011464 ORTHO05D014025 4.6e-09 65.5 105 38.1
AT1G14060 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 4.6e-09 65.5 96 38.5
Ca_08721_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 4.6e-09 65.5 82 42.7
C08p46070 Brassica napus HOM05D003879 ORTHO05D003858 5.9e-09 65.1 101 39.6
Aqoxy4G02841 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 7.8e-09 64.7 93 36.6
AT1G18197 Arabidopsis thaliana HOM05D013370 ORTHO05D015382 7.8e-09 64.7 78 47.4
CiPaw.06G087900 Carya illinoinensis HOM05D003879 ORTHO05D003858 7.8e-09 64.7 105 34.3
Migut.L01257 Erythranthe guttata HOM05D003879 ORTHO05D003858 7.8e-09 64.7 72 43.1
Thecc.07G109400 Theobroma cacao HOM05D003879 ORTHO05D003858 7.8e-09 64.7 97 36.1
BolC8t49252H Brassica oleracea HOM05D015260 ORTHO05D003858 1.0e-08 64.3 146 36.3
Glyma.20G032800 Glycine max HOM05D003879 ORTHO05D003858 1.0e-08 64.3 95 36.8
TAR374G1047 Trochodendron aralioides HOM05D003879 ORTHO05D003858 1.0e-08 64.3 96 37.5
Prupe.1G004000 Prunus persica HOM05D003879 ORTHO05D003858 1.3e-08 63.9 72 43.1
Haze_11967 Corylus avellana HOM05D000508 ORTHO05D000371 1.7e-08 63.5 70 44.3
Dinv16679 Davidia involucrata HOM05D003879 ORTHO05D003858 1.7e-08 63.5 106 34.9
SGA_v2.0_scaffold455G51901 Striga asiatica HOM05D003879 ORTHO05D003858 1.7e-08 63.5 118 36.4
TPR.G34072 Trifolium pratense HOM05D003879 ORTHO05D003858 1.7e-08 63.5 94 35.1
FAN01G2110 Fragaria x ananassa HOM05D003879 ORTHO05D003858 2.3e-08 63.2 124 30.6
Gohir.D11G305600 Gossypium hirsutum HOM05D003879 ORTHO05D003858 2.3e-08 63.2 108 35.2
Potri.013G099100 Populus trichocarpa HOM05D003879 ORTHO05D003858 2.3e-08 63.2 72 40.3
Rhsim12G0132500 Rhododendron simsii HOM05D003879 ORTHO05D003858 2.3e-08 63.2 72 41.7
Sabra13G0083700 Salix brachista HOM05D003879 ORTHO05D003858 2.3e-08 63.2 85 38.8
Sabra13G0085000 Salix brachista HOM05D003879 ORTHO05D003858 2.3e-08 63.2 85 38.8
BcaC07g38700 Brassica carinata HOM05D015260 ORTHO05D003858 3.0e-08 62.8 142 35.2
BcaC07g40413 Brassica carinata HOM05D000331 ORTHO05D003858 3.0e-08 62.8 98 39.8
C08p16290 Brassica napus HOM05D015260 ORTHO05D003858 3.0e-08 62.8 142 35.2
MD04G1004200 Malus domestica HOM05D003879 ORTHO05D003858 3.0e-08 62.8 72 41.7
PGR119G2196 Punica granatum HOM05D003879 ORTHO05D003858 3.0e-08 62.8 85 38.8
Gohir.D11G305800 Gossypium hirsutum HOM05D003879 ORTHO05D003858 3.9e-08 62.4 108 34.3
Hma1.2p1_1079F.1_g254860 Hydrangea macrophylla HOM05D003879 ORTHO05D003858 3.9e-08 62.4 98 40.8
Lj4g0017661 Lotus japonicus HOM05D003879 ORTHO05D003858 3.9e-08 62.4 72 43.1
Lj4g0023987 Lotus japonicus HOM05D003879 ORTHO05D003858 3.9e-08 62.4 70 42.9
Thecc.02G340900 Theobroma cacao HOM05D003879 ORTHO05D003858 3.9e-08 62.4 85 38.8
HPP92_007611 Vanilla planifolia HOM05D003879 ORTHO05D003858 3.9e-08 62.4 72 44.4
AL1G24250 Arabidopsis lyrata HOM05D014944 ORTHO05D007107 5.0e-08 62.0 95 37.9
BcaB04g19402 Brassica carinata HOM05D011464 ORTHO05D014025 5.0e-08 62.0 113 35.4
CARHR014440 Cardamine hirsuta HOM05D003879 ORTHO05D003858 5.0e-08 62.0 79 36.7
Duzib251G0512 Durio zibethinus HOM05D003879 ORTHO05D003858 5.0e-08 62.0 85 38.8
Medtr4g082300 Medicago truncatula HOM05D003879 ORTHO05D003858 5.0e-08 62.0 72 41.7
Rhsim05G0092100 Rhododendron simsii HOM05D003879 ORTHO05D003858 5.0e-08 62.0 77 40.3
SalBow8G1689 Salvia bowleyana HOM05D003879 ORTHO05D003858 5.0e-08 62.0 72 43.1
MSTRG.2335 Avicennia marina HOM05D003879 ORTHO05D003858 6.6e-08 61.6 104 34.6
BcaB08g34365 Brassica carinata HOM05D003879 ORTHO05D003858 6.6e-08 61.6 101 34.7
CsaV3_5G033000 Cucumis sativus L. HOM05D003879 ORTHO05D003858 6.6e-08 61.6 130 31.5
RhsimUnG0183500 Rhododendron simsii HOM05D003879 ORTHO05D003858 6.6e-08 61.6 100 36.0
Sabra19G0093000 Salix brachista HOM05D003879 ORTHO05D003858 6.6e-08 61.6 72 40.3
Ah.03g134780 Amaranthus hybridus HOM05D003879 ORTHO05D003858 8.6e-08 61.2 71 43.7
BcaC07g39829 Brassica carinata HOM05D011464 ORTHO05D014025 8.6e-08 61.2 156 30.8
Cfa008939 Carpinus fangiana HOM05D003879 ORTHO05D003858 8.6e-08 61.2 66 45.5
Dinv34127 Davidia involucrata HOM05D003879 ORTHO05D003858 8.6e-08 61.2 113 37.2
SGA_v2.0_scaffold36G14411 Striga asiatica HOM05D003879 ORTHO05D003858 8.6e-08 61.2 72 41.7
CiPaw.07G072500 Carya illinoinensis HOM05D003879 ORTHO05D003858 1.1e-07 60.8 72 40.3
CDE07G0815 Ceratophyllum demersum HOM05D003879 ORTHO05D003858 1.1e-07 60.8 82 41.5
FAN10G1503 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.1e-07 60.8 102 32.4
Gohir.A11G287541 Gossypium hirsutum HOM05D003879 ORTHO05D003858 1.1e-07 60.8 96 38.5
Gorai.007G326500 Gossypium raimondii HOM05D003879 ORTHO05D003858 1.1e-07 60.8 72 41.7
Potri.019G081400 Populus trichocarpa HOM05D003879 ORTHO05D003858 1.1e-07 60.8 72 38.9
FvH4_7g07760 Fragaria vesca HOM05D003879 ORTHO05D003858 1.5e-07 60.5 124 30.6
FAN06G4142 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.5e-07 60.5 124 30.6
Manes.01G033400 Manihot esculenta HOM05D003879 ORTHO05D003858 1.5e-07 60.5 71 40.8
Nitab4.5_0004690g0010 Nicotiana tabacum HOM05D003879 ORTHO05D003858 1.5e-07 60.5 86 38.4
Carub.0006s0105 Capsella rubella HOM05D003879 ORTHO05D003858 1.9e-07 60.1 78 39.7
Ah.02g129450 Amaranthus hybridus HOM05D003879 ORTHO05D003858 2.5e-07 59.7 72 40.3
AL1G25910 Arabidopsis lyrata HOM05D011464 ORTHO05D003858 2.5e-07 59.7 93 37.6
CAN.G964.6 Capsicum annuum HOM05D003879 ORTHO05D003858 2.5e-07 59.7 72 41.7
DCAR_014653 Daucus carota HOM05D003879 ORTHO05D003858 2.5e-07 59.7 73 43.8
Duzib268G0934 Durio zibethinus HOM05D003879 ORTHO05D003858 2.5e-07 59.7 75 41.3
BcaB08g34355 Brassica carinata HOM05D003879 ORTHO05D003858 3.3e-07 59.3 90 37.8
BcaB08g34356 Brassica carinata HOM05D003879 ORTHO05D003858 3.3e-07 59.3 90 37.8
BcaB08g34363 Brassica carinata HOM05D003879 ORTHO05D003858 3.3e-07 59.3 90 37.8
Nitab4.5_0000391g0360 Nicotiana tabacum HOM05D003879 ORTHO05D003858 3.3e-07 59.3 99 34.3
COL.COLO4_17583 Corchorus olitorius HOM05D003879 ORTHO05D003858 4.3e-07 58.9 71 39.4
Sed0022737 Sechium edule HOM05D003879 ORTHO05D003858 4.3e-07 58.9 83 38.6
Sopen05g007910 Solanum pennellii HOM05D003879 ORTHO05D003858 4.3e-07 58.9 69 42.0
arahy.Tifrunner.gnm1.ann1.8KK2IT Arachis hypogaea HOM05D003879 ORTHO05D003858 5.6e-07 58.5 89 36.0
BolC8t50643H Brassica oleracea HOM05D011464 ORTHO05D014025 5.6e-07 58.5 108 35.2
BolC8t50653H Brassica oleracea HOM05D011464 ORTHO05D014025 5.6e-07 58.5 156 29.5
Ca_08720_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 5.6e-07 58.5 69 40.6
Lalb_Chr16g0385721 Lupinus albus HOM05D003879 ORTHO05D003858 5.6e-07 58.5 87 35.6
Manes.08G154000 Manihot esculenta HOM05D003879 ORTHO05D003858 5.6e-07 58.5 106 34.0
Os07g0158400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 5.6e-07 58.5 58 50.0
TWI73G0721 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 5.6e-07 58.5 72 38.9
BcaB08g34362 Brassica carinata HOM05D003879 ORTHO05D003858 7.3e-07 58.2 96 37.5
Nitab4.5_0013306g0020 Nicotiana tabacum HOM05D003879 ORTHO05D003858 7.3e-07 58.2 83 38.6
Potri.013G109100 Populus trichocarpa HOM05D003879 ORTHO05D003858 7.3e-07 58.2 71 38.0
Solyc05g013170.2 Solanum lycopersicum HOM05D003879 ORTHO05D003858 7.3e-07 58.2 72 40.3
TWI60G0224 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 7.3e-07 58.2 72 38.9
unitig_21.g20857 Utricularia gibba HOM05D003879 ORTHO05D003858 7.3e-07 58.2 107 31.8
VMungo0251G2410 Vigna mungo HOM05D003879 ORTHO05D003858 7.3e-07 58.2 114 32.5
CSS0010298 Camellia sinensis var. sinensis HOM05D003879 ORTHO05D003858 9.5e-07 57.8 72 37.5
ClCG05G024040 Citrullus lanatus HOM05D003879 ORTHO05D003858 9.5e-07 57.8 72 40.3
HanXRQChr12g0361951 Helianthus annuus HOM05D003879 ORTHO05D003858 9.5e-07 57.8 91 36.3
Lalb_Chr09g0329191 Lupinus albus HOM05D003879 ORTHO05D003858 9.5e-07 57.8 93 34.4
Os03g0647400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 9.5e-07 57.8 97 37.1
PSO063G6167 Papaver somniferum HOM05D003879 ORTHO05D003858 9.5e-07 57.8 97 34.0
AT1G23201 Arabidopsis thaliana HOM05D014944 ORTHO05D017385 1.2e-06 57.4 82 36.6
EL10Ac6g13251 Beta vulgaris HOM05D003879 ORTHO05D003858 1.2e-06 57.4 67 41.8
Phvul.002G169800 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 1.2e-06 57.4 72 40.3
Zm00001eb050330 Zea mays HOM05D003879 ORTHO05D003858 1.2e-06 57.4 76 40.8
Actinidia31968 Actinidia chinensis HOM05D003879 ORTHO05D003858 1.6e-06 57.0 84 38.1
arahy.Tifrunner.gnm1.ann1.1F58IB Arachis hypogaea HOM05D003879 ORTHO05D003858 1.6e-06 57.0 72 38.9
COL.COLO4_27987 Corchorus olitorius HOM05D003879 ORTHO05D003858 1.6e-06 57.0 72 38.9
MELO3C012121.2 Cucumis melo HOM05D003879 ORTHO05D003858 1.6e-06 57.0 72 38.9
Eucgr.B03201 Eucalyptus grandis HOM05D003879 ORTHO05D003858 1.6e-06 57.0 72 36.1
ATR0559G110 Amborella trichopoda HOM05D003879 ORTHO05D003858 2.1e-06 56.6 57 45.6
arahy.Tifrunner.gnm1.ann1.WFL4FE Arachis hypogaea HOM05D003879 ORTHO05D003858 2.1e-06 56.6 85 40.0
Phvul.005G037600 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 2.1e-06 56.6 119 31.9
BolC5t30188H Brassica oleracea HOM05D013370 ORTHO05D016580 2.8e-06 56.2 101 41.6
BolC8t50649H Brassica oleracea HOM05D011464 ORTHO05D014025 2.8e-06 56.2 108 35.2
Lsat_1_v5_gn_4_10781 Lactuca sativa HOM05D003879 ORTHO05D003858 2.8e-06 56.2 101 37.6
Actinidia17746 Actinidia chinensis HOM05D003879 ORTHO05D003858 3.6e-06 55.8 72 36.1
PSO478G4561 Papaver somniferum HOM05D003879 ORTHO05D003858 3.6e-06 55.8 69 39.1
RcHm_v2.0_Chr1g0342011 Rosa chinensis HOM05D003879 ORTHO05D003858 3.6e-06 55.8 72 37.5
PGSC0003DMG400028395 Solanum tuberosum HOM05D003879 ORTHO05D003858 3.6e-06 55.8 57 47.4
AL1G36940 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 4.7e-06 55.5 105 32.4
AL7G35920 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 4.7e-06 55.5 105 32.4
PSO017G6566 Papaver somniferum HOM05D003879 ORTHO05D003858 4.7e-06 55.5 69 39.1
SHI14928 Sapria himalayana HOM05D003879 ORTHO05D003858 4.7e-06 55.5 80 40.0
Prupe.5G003300 Prunus persica HOM05D003879 ORTHO05D003858 6.2e-06 55.1 100 37.0
PGSC0003DMG400002853 Solanum tuberosum HOM05D003879 ORTHO05D003858 6.2e-06 55.1 78 39.7
MSTRG.7783 Avicennia marina HOM05D003879 ORTHO05D003858 8.0e-06 54.7 71 45.1
ECA233G3198 Erigeron canadensis HOM05D003879 ORTHO05D003858 8.0e-06 54.7 78 41.0
Zm00001eb218620 Zea mays HOM05D003879 ORTHO05D003858 8.0e-06 54.7 76 39.5


User provided reference genes

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