Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 0.0e+00 1427.2 749 100.0
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 0.0e+00 1290.4 758 90.1
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 0.0e+00 1252.7 758 86.9
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 0.0e+00 1146.7 760 80.9
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 0.0e+00 1145.6 758 81.1
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 0.0e+00 1143.3 758 81.1
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 0.0e+00 1134.4 756 78.7
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 0.0e+00 1134.4 771 79.5
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 0.0e+00 1111.3 758 79.2
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 2.8e-308 1061.6 779 73.0
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 1.2e-287 993.0 576 85.8
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 3.5e-287 991.5 758 71.9
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 5.1e-278 961.1 779 69.8
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 3.2e-240 835.5 646 67.0
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 1.0e-238 830.5 752 58.0
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 2.3e-238 829.3 763 58.1
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 2.7e-234 815.8 759 58.8
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 8.0e-231 804.3 746 58.4
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 1.5e-229 800.0 778 55.7
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 4.4e-229 798.5 737 58.1
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 5.7e-229 798.1 769 57.6
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 1.3e-228 797.0 763 57.5
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 1.0e-225 787.3 760 58.9
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 1.7e-225 786.6 749 57.4
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 1.0e-222 777.3 715 58.6
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 3.0e-222 775.8 748 57.2
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 3.0e-222 775.8 717 60.4
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 4.0e-222 775.4 618 64.1
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 6.3e-220 768.1 696 57.3
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 1.4e-219 766.9 748 57.2
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 1.8e-219 766.5 757 57.6
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 2.4e-219 766.1 636 62.4
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 4.1e-219 765.4 699 56.9
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 7.0e-219 764.6 764 57.5
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 7.0e-219 764.6 636 61.9
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 7.3e-216 754.6 726 56.5
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 1.6e-215 753.4 712 59.4
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 3.6e-215 752.3 747 55.4
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 8.9e-214 747.7 756 56.3
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 8.9e-214 747.7 728 54.0
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 1.3e-212 743.8 622 60.6
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 1.3e-212 743.8 758 53.2
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 4.9e-212 741.9 748 54.8
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 1.4e-211 740.3 611 61.2
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 4.1e-211 738.8 663 57.0
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 9.2e-211 737.6 583 64.0
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 5.0e-209 731.9 754 52.4
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 4.3e-208 728.8 633 59.2
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 5.6e-208 728.4 599 60.4
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 5.6e-208 728.4 550 64.5
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 7.3e-208 728.0 758 53.2
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 7.3e-208 728.0 640 57.7
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 7.5e-205 718.0 769 53.3
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 1.3e-204 717.2 756 53.3
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 4.1e-203 712.2 750 52.8
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 4.1e-203 712.2 649 57.6
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 3.6e-199 699.1 760 52.5
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 1.1e-198 697.6 650 56.6
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 6.8e-198 694.9 638 56.3
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 4.4e-197 692.2 761 52.3
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 9.9e-197 691.0 742 54.7
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 1.3e-196 690.6 648 55.7
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 6.4e-196 688.3 778 52.1
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 9.2e-195 684.5 627 55.8
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 4.3e-192 675.6 652 55.2
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 9.6e-192 674.5 650 54.9
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 2.1e-191 673.3 727 51.2
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 3.4e-189 666.0 732 51.6
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 2.4e-187 659.8 1047 40.4
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 2.3e-185 653.3 603 55.9
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 4.3e-184 649.0 752 51.1
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 7.3e-184 648.3 570 58.4
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 4.8e-183 645.6 642 54.2
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 1.8e-182 643.7 644 53.1
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 4.4e-181 639.0 780 47.6
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 1.7e-180 637.1 640 53.1
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.7e-180 637.1 615 54.8
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 9.3e-179 631.3 638 52.2
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 3.5e-178 629.4 509 61.1
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 1.9e-176 623.6 818 46.5
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 3.3e-176 622.9 651 51.2
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 7.3e-176 621.7 693 48.9
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 4.8e-175 619.0 764 49.1
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 3.3e-168 596.3 617 52.4
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 1.4e-166 590.9 718 46.5
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 8.4e-164 581.6 642 48.6
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 7.9e-162 575.1 650 53.1
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 1.5e-157 560.8 583 50.1
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 7.6e-157 558.5 852 44.5
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 5.0e-156 555.8 618 49.2
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 6.9e-150 535.4 584 47.1
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 7.7e-149 531.9 637 45.5
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 1.0e-148 531.6 527 52.8
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 1.4e-147 527.7 587 47.9
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 6.9e-142 508.8 384 66.4
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 7.7e-141 505.4 570 50.7
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 1.2e-133 481.5 639 42.9
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 3.5e-133 479.9 384 62.8
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 3.6e-130 469.9 538 50.6
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 2.3e-129 467.2 400 59.5
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.3e-124 451.4 535 50.1
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.0e-121 441.8 710 43.2
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 5.7e-120 436.0 700 41.3
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.1e-115 421.8 326 63.2
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 1.5e-112 411.4 348 59.8
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 7.0e-110 402.5 334 59.0
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 5.9e-109 399.4 355 59.4
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 2.8e-106 390.6 290 65.2
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 5.7e-104 382.9 316 61.1
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 1.9e-99 367.9 446 51.8
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 7.3e-99 365.9 446 44.6
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 4.7e-98 363.2 501 41.7
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.2e-93 348.6 554 42.1
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 6.6e-92 342.8 518 38.8
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 4.4e-80 303.5 493 42.2
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 1.1e-75 288.9 731 32.0
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 2.8e-74 284.3 311 52.4
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 6.8e-73 279.6 603 31.5
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 1.1e-70 272.3 319 48.3
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 2.9e-63 247.7 286 52.8
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.1e-57 229.2 216 55.6
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 6.9e-57 226.5 301 45.2
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 2.0e-56 224.9 152 69.1
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 5.5e-54 216.9 226 47.3
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 1.2e-53 215.7 157 68.2
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 6.0e-53 213.4 202 56.9
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 5.1e-52 210.3 353 41.1
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 4.0e-49 200.7 148 66.9
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 4.5e-48 197.2 194 53.6
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 4.9e-47 193.7 284 41.9
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 1.8e-44 185.3 148 61.5
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 5.1e-44 183.7 207 47.8
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 6.7e-44 183.3 136 66.9
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 8.4e-39 166.4 253 40.3
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 2.5e-38 164.9 301 39.2
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 1.2e-32 146.0 337 33.2
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 2.1e-29 135.2 117 63.2
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.0e-28 132.9 93 74.2
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 4.3e-27 127.5 259 34.0
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 9.7e-27 126.3 116 59.5
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 1.3e-26 125.9 85 75.3
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 6.3e-26 123.6 276 34.1
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 6.3e-26 123.6 290 31.0
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 7.7e-24 116.7 86 62.8
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 4.2e-22 110.9 84 65.5
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 3.6e-21 107.8 85 62.4
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 4.7e-21 107.5 89 62.9
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 6.3e-18 97.1 71 70.4
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 2.0e-16 92.0 71 62.0
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 4.2e-14 84.3 106 46.2
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 3.6e-13 81.3 93 50.5
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 3.7e-10 71.2 83 45.8
Rhsim03G0091700 Rhododendron simsii HOM05D000751 ORTHO05D340051 5.0e-07 60.8 76 43.4
Aqoxy1G02674 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.1e-06 59.7 56 57.1


User provided reference genes

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