Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 1.1e-75 286.6 153 100.0
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 1.5e-72 276.2 153 96.1
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 2.2e-71 272.3 153 94.1
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 5.1e-68 261.2 154 90.3
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 1.3e-66 256.5 154 90.9
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 1.0e-63 246.9 151 90.1
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 2.2e-63 245.7 154 85.7
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 3.8e-63 245.0 154 85.7
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 8.5e-63 243.8 154 85.1
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 8.5e-63 243.8 154 89.0
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 8.5e-63 243.8 154 89.0
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 1.5e-62 243.0 154 83.8
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 3.2e-62 241.9 153 84.3
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 3.2e-62 241.9 154 88.3
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 1.2e-61 240.0 154 83.1
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 4.7e-61 238.0 154 84.4
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 6.1e-61 237.7 154 82.5
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 1.0e-60 236.9 157 82.8
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 8.2e-58 227.3 155 79.4
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 5.3e-57 224.6 153 79.7
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 7.0e-57 224.2 155 78.1
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 7.0e-57 224.2 155 78.1
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 9.1e-57 223.8 155 78.1
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 4.2e-54 214.9 150 76.7
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 2.1e-53 212.6 127 92.9
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 8.0e-53 210.7 127 92.1
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 6.8e-52 207.6 153 72.5
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 8.8e-52 207.2 137 79.6
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 2.6e-51 205.7 136 77.2
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 2.6e-51 205.7 157 71.3
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 2.6e-51 205.7 137 77.4
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 5.7e-51 204.5 136 77.9
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 9.8e-51 203.8 136 77.9
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 9.8e-51 203.8 136 77.9
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 1.3e-50 203.4 137 78.1
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 1.3e-50 203.4 145 74.5
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 1.7e-50 203.0 137 75.9
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 2.2e-50 202.6 152 72.4
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 2.2e-50 202.6 137 75.9
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 2.8e-50 202.2 153 70.6
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 3.7e-50 201.8 152 72.4
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 3.7e-50 201.8 137 75.9
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 8.3e-50 200.7 153 69.9
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 8.3e-50 200.7 153 69.9
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.1e-49 200.3 153 70.6
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 1.4e-49 199.9 133 78.2
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 1.4e-49 199.9 137 75.9
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 2.4e-49 199.1 136 76.5
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 2.4e-49 199.1 152 71.7
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 3.1e-49 198.7 154 70.1
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 7.0e-49 197.6 130 78.5
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 1.2e-48 196.8 137 75.9
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 1.6e-48 196.4 137 75.9
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 1.6e-48 196.4 152 70.4
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 7.7e-48 194.1 152 69.7
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 1.7e-47 193.0 137 74.5
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 2.2e-47 192.6 152 70.4
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 3.8e-47 191.8 135 72.6
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 3.8e-47 191.8 151 66.9
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 3.8e-47 191.8 151 66.9
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 3.8e-47 191.8 137 73.7
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 5.0e-47 191.4 137 70.8
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 5.0e-47 191.4 152 69.1
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 8.5e-47 190.7 135 74.1
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 8.5e-47 190.7 137 70.1
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 8.5e-47 190.7 137 72.3
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 1.1e-46 190.3 137 70.1
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 1.5e-46 189.9 137 70.8
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 1.9e-46 189.5 136 73.5
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 2.5e-46 189.1 137 72.3
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.2e-45 186.8 135 73.3
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 1.2e-45 186.8 179 59.8
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 1.2e-45 186.8 136 73.5
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.6e-45 186.4 135 73.3
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.6e-45 186.4 136 70.6
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 2.1e-45 186.0 135 73.3
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 2.1e-45 186.0 137 69.3
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 2.7e-45 185.7 155 63.9
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 3.6e-45 185.3 150 66.0
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 6.1e-45 184.5 182 58.8
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 6.1e-45 184.5 137 69.3
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 6.1e-45 184.5 149 65.1
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 8.0e-45 184.1 132 72.7
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.0e-44 183.7 152 63.8
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 1.0e-44 183.7 135 73.3
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 1.4e-44 183.3 135 72.6
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 2.3e-44 182.6 145 66.2
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 2.3e-44 182.6 135 72.6
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 3.0e-44 182.2 131 70.2
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 5.2e-44 181.4 137 70.8
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 5.2e-44 181.4 100 96.0
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 5.2e-44 181.4 131 71.8
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 6.8e-44 181.0 140 68.6
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 8.8e-44 180.6 122 77.9
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 8.8e-44 180.6 138 68.8
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 8.8e-44 180.6 145 68.3
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 2.0e-43 179.5 137 67.2
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 5.7e-43 177.9 131 67.9
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 1.3e-42 176.8 126 71.4
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 1.7e-42 176.4 138 64.5
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 2.8e-42 175.6 124 73.4
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 4.9e-42 174.9 131 69.5
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 8.3e-42 174.1 137 65.7
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 8.3e-42 174.1 134 70.1
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 3.5e-40 168.7 174 55.7
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 4.5e-40 168.3 126 71.4
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 1.2e-37 160.2 124 71.0
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 2.8e-37 159.1 150 57.3
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 6.1e-37 157.9 135 63.0
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 1.4e-36 156.8 108 77.8
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 2.6e-35 152.5 99 81.8
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 1.7e-34 149.8 105 74.3
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 2.4e-33 146.0 100 75.0
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 5.4e-33 144.8 101 77.2
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 7.0e-33 144.4 102 73.5
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 4.6e-32 141.7 102 77.5
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 8.6e-31 137.5 117 59.0
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 1.5e-30 136.7 118 60.2
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 4.7e-29 131.7 123 56.9
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 3.4e-27 125.6 140 45.7
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 5.8e-27 124.8 84 73.8
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 1.3e-26 123.6 88 71.6
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 1.4e-25 120.2 87 71.3
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 9.2e-25 117.5 110 65.5
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 1.0e-23 114.0 78 75.6
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 3.9e-23 112.1 74 75.7
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 2.6e-19 99.4 88 60.2
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 6.6e-15 84.7 125 40.0
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 6.2e-13 78.2 121 41.3
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 1.4e-12 77.0 117 43.6
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 8.9e-12 74.3 125 40.0
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 4.4e-11 72.0 63 61.9
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 1.7e-10 70.1 48 75.0
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 1.7e-10 70.1 48 75.0
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 3.2e-09 65.9 52 65.4
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 2.1e-08 63.2 47 68.1
C08p44260 Brassica napus HOM05D005569 ORTHO05D007052 3.0e-07 59.3 39 84.6
BolC8t51972H Brassica oleracea HOM05D005569 ORTHO05D000015 3.0e-07 59.3 36 86.1
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 5.6e-06 55.1 39 64.1


User provided reference genes

Program Settings