Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G28960 Arabidopsis lyrata HOM05D007364 ORTHO05D009275 2.5e-72 275.4 145 100.0
AT1G16790 Arabidopsis thaliana HOM05D007364 ORTHO05D009275 2.0e-69 265.8 145 95.9
CARHR017250 Cardamine hirsuta HOM05D007364 ORTHO05D009275 5.8e-69 264.2 145 93.8
Carub.0001s1652 Capsella rubella HOM05D007364 ORTHO05D009275 1.1e-67 260.0 143 93.7
Thhalv10009015m.g Eutrema salsugineum HOM05D007364 ORTHO05D009275 3.0e-65 251.9 150 88.7
BcaC07g38817 Brassica carinata HOM05D007364 ORTHO05D009275 3.9e-65 251.5 151 89.4
Sp1g14930 Schrenkiella parvula HOM05D007364 ORTHO05D009275 3.9e-65 251.5 150 89.3
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 6.6e-65 250.8 151 89.4
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 5.8e-61 237.7 151 84.8
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 1.7e-60 236.1 151 84.8
BcaB03g13030 Brassica carinata HOM05D007364 ORTHO05D009275 6.4e-60 234.2 151 84.1
Aa31LG7G1240 Aethionema arabicum HOM05D007364 ORTHO05D009275 1.9e-59 232.6 150 82.7
A06p12720 Brassica napus HOM05D007364 ORTHO05D009275 2.4e-59 232.3 152 84.2
BraA06t24432Z Brassica rapa HOM05D007364 ORTHO05D009275 3.2e-59 231.9 152 84.2
C05p15020 Brassica napus HOM05D007364 ORTHO05D009275 3.0e-57 225.3 152 82.2
BolC5t30217H Brassica oleracea HOM05D007364 ORTHO05D009275 3.9e-57 224.9 152 82.2
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 4.3e-56 221.5 135 88.9
THA.LOC104812333 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 1.4e-54 216.5 150 77.3
BcaC05g25538 Brassica carinata HOM05D007364 ORTHO05D009275 1.5e-45 186.4 122 86.9
THA.LOC104808105 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 1.6e-39 166.4 141 66.7
Gohir.D05G115800 Gossypium hirsutum HOM05D007364 ORTHO05D009275 2.6e-37 159.1 146 56.8
BcaB02g06675 Brassica carinata HOM05D007364 ORTHO05D009275 4.5e-37 158.3 94 86.2
Manes.14G008700 Manihot esculenta HOM05D007364 ORTHO05D009275 4.5e-37 158.3 143 59.4
Gorai.009G119800 Gossypium raimondii HOM05D007364 ORTHO05D009275 7.6e-37 157.5 146 56.2
Gohir.A05G115400 Gossypium hirsutum HOM05D007364 ORTHO05D009275 2.2e-36 156.0 146 56.2
Atru.chr1.2614 Acer truncatum HOM05D007364 ORTHO05D009275 4.9e-36 154.8 144 59.0
Thecc.06G054700 Theobroma cacao HOM05D007364 ORTHO05D009275 4.9e-36 154.8 144 56.9
Potri.010G254100 Populus trichocarpa HOM05D007364 ORTHO05D009275 1.6e-34 149.8 146 56.8
Duzib235G1177 Durio zibethinus HOM05D007364 ORTHO05D009275 2.7e-34 149.1 147 55.8
Cfa003431 Carpinus fangiana HOM05D007364 ORTHO05D009275 7.9e-34 147.5 142 54.9
Ciclev10013953m.g Citrus clementina HOM05D007364 ORTHO05D009275 5.1e-33 144.8 146 52.7
TWI38G2254 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 8.7e-33 144.1 161 50.9
TWI63G0101 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 8.7e-33 144.1 159 49.1
arahy.Tifrunner.gnm1.ann1.TFQ65X Arachis hypogaea HOM05D007364 ORTHO05D009275 1.5e-32 143.3 140 55.0
arahy.Tifrunner.gnm1.ann1.A7U39C Arachis hypogaea HOM05D007364 ORTHO05D009275 3.3e-32 142.1 140 54.3
Haze_16200 Corylus avellana HOM05D007364 ORTHO05D009275 3.3e-32 142.1 143 53.8
Lj4g0012611 Lotus japonicus HOM05D007364 ORTHO05D009275 4.0e-30 135.2 114 59.6
TAR625G0136 Trochodendron aralioides HOM05D007364 ORTHO05D009275 5.3e-30 134.8 139 51.1
FAN05G2474 Fragaria x ananassa HOM05D007364 ORTHO05D009275 2.0e-29 132.9 137 49.6
Glyma.05G173100 Glycine max HOM05D007364 ORTHO05D009275 2.0e-29 132.9 137 52.6
Eucgr.J03185 Eucalyptus grandis HOM05D007364 ORTHO05D009275 3.4e-29 132.1 146 47.9
ClCG07G014710 Citrullus lanatus HOM05D007364 ORTHO05D009275 5.8e-29 131.3 146 52.1
QL05p088447 Quercus lobata HOM05D007364 ORTHO05D009275 9.9e-29 130.6 134 54.5
MBI16_g18204_MAGBIO Magnolia biondii HOM05D007364 ORTHO05D009275 2.9e-28 129.0 141 44.0
TAR636G2112 Trochodendron aralioides HOM05D007364 ORTHO05D009275 2.9e-28 129.0 144 48.6
COL.COLO4_38285 Corchorus olitorius HOM05D007364 ORTHO05D009275 3.8e-28 128.6 103 59.2
TPR.G6288 Trifolium pratense HOM05D007364 ORTHO05D009275 4.9e-28 128.3 141 48.9
FvH4_6g36820 Fragaria vesca HOM05D007364 ORTHO05D009275 6.4e-28 127.9 140 50.0
FAN02G1908 Fragaria x ananassa HOM05D007364 ORTHO05D009275 6.4e-28 127.9 140 50.0
FAN14G5026 Fragaria x ananassa HOM05D007364 ORTHO05D009275 6.4e-28 127.9 140 50.0
Glyma.08G130400 Glycine max HOM05D007364 ORTHO05D009275 6.4e-28 127.9 137 51.1
Ca_17791_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 8.4e-28 127.5 141 48.9
Ca_29552_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 8.4e-28 127.5 141 48.9
MELO3C010416.2 Cucumis melo HOM05D007364 ORTHO05D009275 1.1e-27 127.1 142 51.4
RcHm_v2.0_Chr2g0149211 Rosa chinensis HOM05D007364 ORTHO05D009275 1.1e-27 127.1 140 50.0
Aqoxy5G03758 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 2.4e-27 125.9 120 53.3
Prupe.3G024300 Prunus persica HOM05D007364 ORTHO05D009275 2.4e-27 125.9 138 50.7
Ah.15g094280 Amaranthus hybridus HOM05D007364 ORTHO05D009275 7.1e-27 124.4 132 46.2
Psat7g058640 Pisum sativum HOM05D007364 ORTHO05D009275 9.3e-27 124.0 140 50.0
VMungo0251G1224 Vigna mungo HOM05D007364 ORTHO05D009275 9.3e-27 124.0 129 52.7
Phvul.002G258200 Phaseolus vulgaris HOM05D007364 ORTHO05D009275 3.5e-26 122.1 129 51.9
Lalb_Chr07g0185511 Lupinus albus HOM05D007364 ORTHO05D009275 6.0e-26 121.3 156 42.9
MD09G1166600 Malus domestica HOM05D007364 ORTHO05D009275 6.0e-26 121.3 138 47.8
Sc15g0001160 Simmondsia chinensis HOM05D000912 ORTHO05D008392 7.9e-26 120.9 111 55.9
CANSAT78G1269 Cannabis sativa HOM05D007364 ORTHO05D009275 3.0e-25 119.0 127 48.8
Nitab4.5_0011805g0010 Nicotiana tabacum HOM05D007364 ORTHO05D009275 1.9e-24 116.3 145 43.4
PGR031G1732 Punica granatum HOM05D007364 ORTHO05D009275 1.9e-24 116.3 141 48.2
AUR62001324 Chenopodium quinoa HOM05D007364 ORTHO05D009275 5.6e-24 114.8 153 40.5
EL10Ac7g18129 Beta vulgaris HOM05D007364 ORTHO05D009275 9.6e-24 114.0 151 42.4
FAN09G0058 Fragaria x ananassa HOM05D007364 ORTHO05D009275 9.6e-24 114.0 129 50.4
Peaxi162Scf00062g00099 Petunia axillaris HOM05D007364 ORTHO05D009275 4.8e-23 111.7 142 43.7
AUR62025707 Chenopodium quinoa HOM05D007364 ORTHO05D009275 6.2e-23 111.3 154 40.9
PSO063G5199 Papaver somniferum HOM05D007364 ORTHO05D009275 1.4e-22 110.2 145 43.4
Hma1.2p1_0191F.1_g083440 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 1.8e-22 109.8 151 41.1
Hma1.2p1_3076F.1_g332395 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 1.8e-22 109.8 151 41.1
Sed0001602 Sechium edule HOM05D007364 ORTHO05D009275 6.9e-22 107.8 107 51.4
Atru.chr2.3597 Acer truncatum HOM05D007364 ORTHO05D009275 9.0e-22 107.5 67 70.1
CAN.G484.12 Capsicum annuum HOM05D007364 ORTHO05D009275 4.5e-21 105.1 142 40.8
PGSC0003DMG400004654 Solanum tuberosum HOM05D007364 ORTHO05D009275 7.6e-21 104.4 143 39.2
Cc09_g07400 Coffea canephora HOM05D007364 ORTHO05D009275 1.0e-20 104.0 143 42.7
Aqoxy2G03840 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 1.7e-20 103.2 101 53.5
Solyc12g099960.1 Solanum lycopersicum HOM05D007364 ORTHO05D009275 2.2e-20 102.8 123 43.1
Sopen12g034580 Solanum pennellii HOM05D007364 ORTHO05D009275 3.8e-20 102.1 143 39.2
Actinidia21894 Actinidia chinensis HOM05D007364 ORTHO05D009275 3.2e-19 99.0 142 40.8
CsaV3_4G028750 Cucumis sativus L. HOM05D007364 ORTHO05D009275 9.3e-19 97.4 106 50.9
unitig_26.g10058 Utricularia gibba HOM05D007364 ORTHO05D009275 9.3e-19 97.4 145 40.0
Lsat_1_v5_gn_4_106261 Lactuca sativa HOM05D007364 ORTHO05D009275 1.6e-18 96.7 135 37.8
PSO170G0377 Papaver somniferum HOM05D007364 ORTHO05D009275 1.6e-18 96.7 144 41.7
DCAR_001424 Daucus carota HOM05D007364 ORTHO05D009275 1.3e-17 93.6 114 42.1
Nitab4.5_0001925g0240 Nicotiana tabacum HOM05D007364 ORTHO05D009275 1.3e-17 93.6 147 36.1
HanXRQChr04g0125291 Helianthus annuus HOM05D007364 ORTHO05D009275 5.7e-16 88.2 130 36.9
Actinidia38815 Actinidia chinensis HOM05D007364 ORTHO05D009275 1.3e-15 87.0 135 38.5
CiPaw.01G207600 Carya illinoinensis HOM05D007364 ORTHO05D009275 1.3e-15 87.0 101 51.5
CiPaw.01G094100 Carya illinoinensis HOM05D007364 ORTHO05D009275 2.8e-15 85.9 102 48.0
HPP92_017109 Vanilla planifolia HOM05D007364 ORTHO05D009275 4.8e-15 85.1 138 36.2
HPP92_017099 Vanilla planifolia HOM05D007364 ORTHO05D009275 1.8e-14 83.2 137 35.8
LjContig00484g0025496 Lotus japonicus HOM05D007364 ORTHO05D009275 2.0e-13 79.7 79 54.4
SGA_v2.0_scaffold71G23970 Striga asiatica HOM05D007364 ORTHO05D009275 3.4e-13 79.0 132 37.1
ECA232G2752 Erigeron canadensis HOM05D007364 ORTHO05D009275 4.5e-13 78.6 90 42.2
Migut.I01209 Erythranthe guttata HOM05D007364 ORTHO05D009275 5.9e-13 78.2 133 33.1
SalBow6G2338 Salvia bowleyana HOM05D007364 ORTHO05D009275 5.9e-13 78.2 110 37.3
Oeu047568.2 Olea europaea HOM05D007364 ORTHO05D009275 7.7e-13 77.8 101 37.6
Lj9P543T41 Lonicera japonica HOM05D007364 ORTHO05D009275 2.9e-12 75.9 99 40.4
Mapoly0061s0135 Marchantia polymorpha HOM05D007364 ORTHO05D009275 9.4e-11 70.9 123 32.5
SEGI_24559 Sequoiadendron giganteum HOM05D007364 ORTHO05D009275 4.8e-07 58.5 105 38.1
Pp3c19_20210 Physcomitrium patens HOM05D007364 ORTHO05D009275 1.1e-06 57.4 129 31.8
AUR62015398 Chenopodium quinoa HOM05D007364 ORTHO05D009275 5.3e-06 55.1 58 36.2
AUR62040375 Chenopodium quinoa HOM05D007364 ORTHO05D009275 5.3e-06 55.1 58 36.2


User provided reference genes

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