Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 2.3e-128 462.2 229 100.0
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 3.9e-112 408.3 229 88.6
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 1.5e-108 396.4 229 84.3
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 6.2e-102 374.4 233 77.3
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 2.4e-101 372.5 232 77.6
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 2.4e-101 372.5 232 77.6
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 5.3e-101 371.3 232 76.7
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 4.5e-100 368.2 233 77.3
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 1.3e-99 366.7 228 77.6
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 1.7e-99 366.3 233 77.7
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 3.8e-99 365.2 234 77.8
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 4.9e-99 364.8 234 77.8
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 1.1e-98 363.6 211 82.0
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 1.1e-98 363.6 234 77.4
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 2.5e-98 362.5 233 78.1
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 2.5e-98 362.5 212 79.7
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 3.2e-98 362.1 235 77.9
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 4.2e-98 361.7 233 76.8
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 5.5e-98 361.3 236 75.4
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 7.1e-98 360.9 212 79.7
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 2.1e-97 359.4 234 77.8
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 6.0e-97 357.8 233 76.4
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.0e-92 342.8 255 69.4
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 2.0e-87 326.2 230 67.0
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 2.4e-85 319.3 245 67.3
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.5e-84 316.6 231 66.2
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 5.0e-75 285.0 219 57.1
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 6.5e-75 284.6 226 58.8
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 8.0e-73 277.7 235 55.7
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.0e-72 277.3 204 57.8
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 8.8e-72 274.2 209 55.5
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.5e-71 273.5 222 56.3
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 2.0e-71 273.1 223 56.1
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 3.3e-71 272.3 218 57.3
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 4.4e-71 271.9 203 57.6
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 4.4e-71 271.9 211 59.2
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 1.3e-70 270.4 201 57.2
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 1.3e-70 270.4 222 56.8
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 3.7e-70 268.9 210 59.0
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 3.7e-70 268.9 211 55.0
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 6.3e-70 268.1 225 53.8
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 6.3e-70 268.1 222 52.3
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 1.4e-69 266.9 212 56.1
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 2.4e-69 266.2 229 54.6
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 2.4e-69 266.2 222 56.8
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 4.1e-69 265.4 224 56.2
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 7.0e-69 264.6 211 54.0
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 2.0e-68 263.1 218 53.2
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 2.6e-68 262.7 223 52.0
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 1.0e-67 260.8 202 60.9
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 1.3e-67 260.4 201 59.2
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 2.9e-67 259.2 224 55.8
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 6.5e-67 258.1 205 54.1
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 1.5e-66 256.9 228 50.9
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 1.9e-66 256.5 223 52.5
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 2.5e-66 256.1 225 52.4
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 3.2e-66 255.8 204 57.8
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 4.2e-66 255.4 209 55.0
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 7.2e-66 254.6 219 53.4
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 7.2e-66 254.6 217 53.0
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 1.2e-65 253.8 196 56.6
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 1.6e-65 253.4 220 54.1
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 2.1e-65 253.1 223 52.5
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 8.0e-65 251.1 235 51.9
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 8.0e-65 251.1 210 53.3
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 1.0e-64 250.8 211 52.6
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 1.4e-64 250.4 213 55.9
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.4e-64 250.4 228 51.3
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 1.8e-64 250.0 199 56.3
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 1.8e-64 250.0 222 48.6
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 4.0e-64 248.8 211 51.7
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 4.0e-64 248.8 227 50.7
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 5.2e-64 248.4 234 50.9
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 8.8e-64 247.7 208 55.3
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 8.8e-64 247.7 213 52.1
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 1.2e-63 247.3 209 50.7
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 2.6e-63 246.1 201 53.2
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 3.4e-63 245.7 211 52.1
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 4.8e-62 241.9 223 49.3
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 8.3e-62 241.1 220 50.0
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.4e-61 240.4 227 48.9
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.4e-61 240.4 230 48.7
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 3.1e-61 239.2 209 50.2
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 3.1e-61 239.2 209 50.2
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 3.1e-61 239.2 188 52.7
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 5.3e-61 238.4 203 55.7
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 7.0e-61 238.0 236 47.9
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 9.1e-61 237.7 209 49.8
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 1.2e-60 237.3 209 50.7
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 2.0e-60 236.5 221 48.9
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 7.7e-60 234.6 210 51.9
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 1.0e-59 234.2 175 60.6
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 2.2e-59 233.0 217 49.3
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.1e-58 230.7 212 49.5
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 9.4e-58 227.6 189 54.5
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 9.4e-58 227.6 200 50.5
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 1.2e-57 227.3 197 50.3
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 6.1e-57 224.9 174 58.0
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 2.3e-56 223.0 188 51.6
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.0e-56 222.6 245 44.9
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 8.8e-56 221.1 215 51.6
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 8.8e-56 221.1 211 48.8
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 2.6e-55 219.5 217 49.3
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.7e-54 216.9 187 52.4
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.8e-54 216.1 221 45.2
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 3.7e-54 215.7 164 53.0
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 2.4e-53 213.0 196 50.5
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 4.1e-53 212.2 217 47.5
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 2.7e-52 209.5 192 51.6
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 1.0e-51 207.6 212 49.5
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 3.8e-51 205.7 203 49.3
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 5.0e-51 205.3 175 51.4
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 6.6e-51 204.9 185 50.3
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 2.1e-49 199.9 192 50.5
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 3.6e-49 199.1 224 44.2
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.0e-48 197.6 235 43.4
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 6.8e-48 194.9 201 45.8
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 6.3e-46 188.3 161 50.9
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 4.5e-44 182.2 122 63.1
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 4.5e-44 182.2 263 40.3
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 8.6e-43 177.9 210 41.9
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 3.3e-42 176.0 247 39.3
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 9.5e-42 174.5 185 44.3
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 4.0e-40 169.1 203 40.4
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 2.0e-39 166.8 108 63.9
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.3e-38 164.1 221 39.4
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 3.7e-38 162.5 207 41.5
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 4.9e-38 162.2 116 59.5
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 2.4e-37 159.8 152 50.7
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 2.5e-34 149.8 129 48.1
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 5.1e-27 125.6 131 43.5
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 2.5e-26 123.2 67 82.1
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.3e-24 116.7 117 47.0
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 1.3e-22 110.9 93 47.3
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 4.9e-22 109.0 53 84.9
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 2.3e-19 100.1 70 54.3
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 2.1e-17 93.6 58 65.5
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 2.8e-17 93.2 61 55.7
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 8.1e-17 91.7 99 54.5
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 3.1e-16 89.7 89 44.9
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 5.2e-16 89.0 56 64.3
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 7.6e-15 85.1 95 47.4
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 6.0e-12 75.5 98 41.8
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 1.7e-11 73.9 98 44.9
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 5.1e-11 72.4 73 49.3
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 1.9e-10 70.5 128 34.4
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 3.3e-10 69.7 49 55.1
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.6e-09 67.4 76 52.6
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 2.1e-09 67.0 72 47.2
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 3.6e-09 66.2 211 26.5
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.2e-07 61.2 83 41.0
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 7.6e-07 58.5 31 64.5


User provided reference genes

Program Settings