Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G28140 Arabidopsis lyrata HOM05D007307 ORTHO05D009190 4.3e-267 924.1 461 100.0
AT1G15980 Arabidopsis thaliana HOM05D007307 ORTHO05D009190 2.1e-258 895.2 460 95.9
Carub.0001s1578 Capsella rubella HOM05D007307 ORTHO05D009190 2.2e-255 885.2 461 95.2
CARHR016480 Cardamine hirsuta HOM05D007307 ORTHO05D009190 3.2e-246 854.7 461 92.8
Sp1g14290 Schrenkiella parvula HOM05D007307 ORTHO05D009190 2.5e-243 845.1 461 91.5
BcaB02g06649 Brassica carinata HOM05D007307 ORTHO05D009190 2.1e-242 842.0 461 90.0
Thhalv10007586m.g Eutrema salsugineum HOM05D007307 ORTHO05D009190 2.8e-242 841.6 460 91.7
A06p12000 Brassica napus HOM05D007307 ORTHO05D009190 1.4e-241 839.3 461 89.8
BraA06t24371Z Brassica rapa HOM05D007307 ORTHO05D009190 1.4e-241 839.3 461 89.8
BcaC05g25617 Brassica carinata HOM05D007307 ORTHO05D009190 4.4e-240 834.3 461 88.9
C05p14190 Brassica napus HOM05D007307 ORTHO05D009190 3.8e-239 831.2 461 88.7
Aa31LG7G560 Aethionema arabicum HOM05D007307 ORTHO05D009190 3.6e-234 814.7 461 88.5
THA.LOC104813590 Tarenaya hassleriana HOM05D007307 ORTHO05D009190 9.3e-222 773.5 461 84.4
Cpa.g.sc10.77 Carica papaya HOM05D007307 ORTHO05D009190 6.7e-204 714.1 465 76.1
Thecc.06G041700 Theobroma cacao HOM05D007307 ORTHO05D009190 3.4e-200 701.8 461 76.4
Duzib192G1050 Durio zibethinus HOM05D007307 ORTHO05D009190 8.5e-199 697.2 462 76.4
QL05p036096 Quercus lobata HOM05D007307 ORTHO05D009190 4.2e-198 694.9 468 74.6
Gorai.009G123800 Gossypium raimondii HOM05D007307 ORTHO05D009190 7.9e-197 690.6 464 75.9
Gohir.D05G120300 Gossypium hirsutum HOM05D007307 ORTHO05D009190 3.0e-196 688.7 464 75.6
Manes.04G102400 Manihot esculenta HOM05D007307 ORTHO05D009190 3.9e-196 688.3 462 75.5
Ciclev10025544m.g Citrus clementina HOM05D007307 ORTHO05D009190 8.8e-196 687.2 471 73.0
CiPaw.02G162300 Carya illinoinensis HOM05D007307 ORTHO05D009190 1.3e-194 683.3 465 73.5
FAN05G4298 Fragaria x ananassa HOM05D007307 ORTHO05D009190 2.8e-194 682.2 465 72.7
MSTRG.11181 Avicennia marina HOM05D007307 ORTHO05D009190 3.7e-194 681.8 467 73.4
Atru.chr10.2412 Acer truncatum HOM05D007307 ORTHO05D009190 1.8e-193 679.5 465 74.0
RcHm_v2.0_Chr2g0132981 Rosa chinensis HOM05D007307 ORTHO05D009190 2.4e-193 679.1 465 72.5
FvH4_6g28640 Fragaria vesca HOM05D007307 ORTHO05D009190 5.3e-193 677.9 465 72.5
FAN14G3907 Fragaria x ananassa HOM05D007307 ORTHO05D009190 6.9e-193 677.6 465 72.5
CDE04G0143 Ceratophyllum demersum HOM05D007307 ORTHO05D009190 4.5e-192 674.9 470 72.3
FAN09G0915 Fragaria x ananassa HOM05D007307 ORTHO05D009190 5.9e-192 674.5 465 72.3
CsaV3_7G031890 Cucumis sativus L. HOM05D007307 ORTHO05D009190 2.2e-191 672.5 443 75.2
Glyma.08G218800 Glycine max HOM05D007307 ORTHO05D009190 2.9e-191 672.2 466 72.1
Lj3g0010338 Lotus japonicus HOM05D007307 ORTHO05D009190 1.4e-190 669.8 426 77.2
TAR625G0746 Trochodendron aralioides HOM05D007307 ORTHO05D009190 1.4e-190 669.8 466 72.3
Cc04_g05100 Coffea canephora HOM05D007307 ORTHO05D009190 1.9e-190 669.5 465 72.7
Nn2g12391 Nelumbo nucifera HOM05D007307 ORTHO05D009190 2.5e-190 669.1 465 72.3
ClCG09G003340 Citrullus lanatus HOM05D007307 ORTHO05D009190 5.5e-190 667.9 468 72.2
Prupe.3G098200 Prunus persica HOM05D007307 ORTHO05D009190 7.2e-190 667.5 459 72.5
Nitab4.5_0002568g0020 Nicotiana tabacum HOM05D007307 ORTHO05D009190 1.6e-189 666.4 466 73.0
Peaxi162Scf00332g00525 Petunia axillaris HOM05D007307 ORTHO05D009190 2.7e-189 665.6 459 73.0
Ca_20542_v3 Cicer arietinum L. HOM05D007307 ORTHO05D009190 3.6e-189 665.2 428 74.8
PGSC0003DMG400019823 Solanum tuberosum HOM05D007307 ORTHO05D009190 3.6e-189 665.2 461 72.7
Nitab4.5_0012161g0020 Nicotiana tabacum HOM05D007307 ORTHO05D009190 4.7e-189 664.8 466 72.5
Glyma.07G023000 Glycine max HOM05D007307 ORTHO05D009190 7.9e-189 664.1 460 72.2
Eucgr.F03957 Eucalyptus grandis HOM05D007307 ORTHO05D009190 1.0e-188 663.7 472 70.1
MD17G1223300 Malus domestica HOM05D007307 ORTHO05D009190 1.0e-188 663.7 460 72.6
Lj5A80T58 Lonicera japonica HOM05D007307 ORTHO05D009190 3.0e-188 662.1 461 72.5
Haze_16668 Corylus avellana HOM05D007307 ORTHO05D009190 6.7e-188 661.0 476 71.6
Solyc03g116870.3 Solanum lycopersicum HOM05D007307 ORTHO05D009190 8.8e-188 660.6 461 72.9
Actinidia25480 Actinidia chinensis HOM05D007307 ORTHO05D009190 1.1e-187 660.2 463 72.8
MELO3C023468.2 Cucumis melo HOM05D007307 ORTHO05D009190 1.1e-187 660.2 443 73.4
GSVIVG01015957001 Vitis vinifera HOM05D007307 ORTHO05D009190 1.1e-187 660.2 468 71.4
Sopen03g035800 Solanum pennellii HOM05D007307 ORTHO05D009190 2.6e-187 659.1 462 72.5
Psat7g260240 Pisum sativum HOM05D007307 ORTHO05D009190 4.4e-187 658.3 466 70.0
Migut.I00693 Erythranthe guttata HOM05D007307 ORTHO05D009190 5.7e-187 657.9 466 70.6
Medtr4g007080 Medicago truncatula HOM05D007307 ORTHO05D009190 7.4e-187 657.5 426 74.9
CSS0015248 Camellia sinensis var. sinensis HOM05D007307 ORTHO05D009190 1.7e-186 656.4 448 72.8
AUR62026998 Chenopodium quinoa HOM05D007307 ORTHO05D009190 2.8e-186 655.6 460 71.3
TPR.G23084 Trifolium pratense HOM05D007307 ORTHO05D009190 3.7e-186 655.2 467 69.8
Potri.001G044300 Populus trichocarpa HOM05D007307 ORTHO05D009190 6.3e-186 654.4 470 71.9
CAN.G407.66 Capsicum annuum HOM05D007307 ORTHO05D009190 1.4e-185 653.3 463 72.1
AUR62030838 Chenopodium quinoa HOM05D007307 ORTHO05D009190 2.4e-185 652.5 460 71.1
TWI18G0485 Tripterygium wilfordii HOM05D007307 ORTHO05D009190 1.6e-184 649.8 463 70.4
Sed0012177 Sechium edule HOM05D007307 ORTHO05D009190 3.5e-184 648.7 447 71.6
Phvul.010G161300 Phaseolus vulgaris HOM05D007307 ORTHO05D009190 5.9e-184 647.9 458 72.1
Lalb_Chr25g0278871 Lupinus albus HOM05D007307 ORTHO05D009190 1.3e-183 646.7 454 71.8
Aqoxy7G01916 Aquilegia oxysepala HOM05D007307 ORTHO05D009190 2.9e-183 645.6 465 71.0
SalBow7G3293 Salvia bowleyana HOM05D007307 ORTHO05D009190 3.8e-183 645.2 461 71.6
EL10Ac3g06300 Beta vulgaris HOM05D007307 ORTHO05D009190 5.0e-183 644.8 456 70.8
CANSAT56G3714 Cannabis sativa HOM05D007307 ORTHO05D009190 4.7e-181 638.3 485 65.8
unitig_52.g17476 Utricularia gibba HOM05D007307 ORTHO05D009190 8.8e-180 634.0 454 70.9
HanXRQChr08g0235871 Helianthus annuus HOM05D007307 ORTHO05D009190 1.5e-179 633.3 468 67.5
VMungo0331G1235 Vigna mungo HOM05D007307 ORTHO05D009190 5.7e-179 631.3 426 73.0
ATR0739G128 Amborella trichopoda HOM05D007307 ORTHO05D009190 9.7e-179 630.6 463 68.7
Lsat_1_v5_gn_5_8240 Lactuca sativa HOM05D007307 ORTHO05D009190 9.7e-179 630.6 468 67.5
Rhsim08G0205700 Rhododendron simsii HOM05D007307 ORTHO05D009190 1.3e-178 630.2 489 68.3
BolC5t30150H Brassica oleracea HOM05D007307 ORTHO05D009190 2.8e-178 629.0 341 89.7
PSO170G4955 Papaver somniferum HOM05D007307 ORTHO05D009190 8.2e-178 627.5 462 68.6
PSO017G5597 Papaver somniferum HOM05D007307 ORTHO05D009190 5.3e-177 624.8 462 68.2
Sabra01G0030600 Salix brachista HOM05D007307 ORTHO05D009190 7.0e-177 624.4 511 64.8
ECA246G2038 Erigeron canadensis HOM05D007307 ORTHO05D009190 1.6e-176 623.2 467 66.2
FAN02G3759 Fragaria x ananassa HOM05D007307 ORTHO05D009190 5.9e-176 621.3 407 74.4
arahy.Tifrunner.gnm1.ann1.X6E8D2 Arachis hypogaea HOM05D007307 ORTHO05D009190 1.0e-175 620.5 475 66.5
Hma1.2p1_0109F.1_g052560 Hydrangea macrophylla HOM05D007307 ORTHO05D009190 1.0e-172 610.5 459 67.8
Oeu051583.2 Olea europaea HOM05D007307 ORTHO05D009190 5.7e-171 604.7 396 75.8
Dinv23284 Davidia involucrata HOM05D007307 ORTHO05D009190 3.7e-162 575.5 382 73.8
Zm00001eb176730 Zea mays HOM05D007307 ORTHO05D009190 4.9e-162 575.1 423 63.8
DCAR_017649 Daucus carota HOM05D007307 ORTHO05D009190 4.1e-161 572.0 407 70.0
Gohir.A05G119300 Gossypium hirsutum HOM05D007307 ORTHO05D009190 8.6e-159 564.3 383 73.9
Os08g0276100 Oryza sativa ssp. japonica HOM05D007307 ORTHO05D009190 8.6e-159 564.3 413 63.7
Zm00001eb412420 Zea mays HOM05D007307 ORTHO05D009190 5.6e-158 561.6 423 62.6
arahy.Tifrunner.gnm1.ann1.DFM3I4 Arachis hypogaea HOM05D007307 ORTHO05D009190 4.4e-147 525.4 475 60.0
COL.COLO4_26702 Corchorus olitorius HOM05D007307 ORTHO05D009190 2.4e-145 519.6 325 80.3
Ah.01g006960 Amaranthus hybridus HOM05D007307 ORTHO05D009190 7.8e-128 461.5 454 55.7
SMO364G0491 Selaginella moellendorffii HOM05D007307 ORTHO05D009190 1.1e-116 424.5 401 52.9
Pp3c9_19250 Physcomitrium patens HOM05D007307 ORTHO05D009190 2.2e-114 416.8 416 51.9
AagrBONN_evm.TU.Sc2ySwM_344.2748 Anthoceros agrestis HOM05D007307 ORTHO05D009190 3.8e-114 416.0 414 53.1
Pp3c15_23280 Physcomitrium patens HOM05D007307 ORTHO05D009190 7.9e-112 408.3 427 50.8
Mapoly0114s0017 Marchantia polymorpha HOM05D007307 ORTHO05D009190 4.9e-106 389.0 408 49.5
CBR_g34729 Chara braunii HOM05D007307 ORTHO05D009190 1.5e-94 350.9 415 45.3
Hma1.2p1_0109F.1_g052570 Hydrangea macrophylla HOM05D007307 ORTHO05D009190 2.7e-72 276.9 198 67.2
Hund06518 Selenicereus undatus HOM05D007307 ORTHO05D009190 1.9e-65 254.2 187 68.4
SEGI_02712 Sequoiadendron giganteum HOM05D007307 ORTHO05D009190 9.1e-60 235.3 203 61.1
SEGI_37660 Sequoiadendron giganteum HOM05D007307 ORTHO05D009190 9.1e-60 235.3 203 61.1
SEGI_25940 Sequoiadendron giganteum HOM05D007307 ORTHO05D009190 4.8e-53 213.0 147 64.6
Actinidia18248 Actinidia chinensis HOM05D007307 ORTHO05D009190 6.2e-24 116.3 88 69.3
Lj5A80T54 Lonicera japonica HOM05D007307 ORTHO05D009190 2.4e-20 104.4 63 77.8


User provided reference genes

Program Settings