Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 0.0e+00 1226.8 709 100.0
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 1.0e-299 1033.1 710 83.9
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 7.3e-242 840.9 727 71.9
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 3.0e-227 792.3 714 67.9
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 1.3e-203 713.8 735 65.3
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 5.5e-197 691.8 752 61.3
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 1.6e-164 583.9 742 59.7
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 3.6e-164 582.8 743 51.0
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 8.0e-164 581.6 766 53.0
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 3.0e-163 579.7 752 58.8
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 1.3e-161 574.3 749 59.3
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 4.8e-161 572.4 749 57.1
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 3.5e-159 566.2 748 57.4
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 4.3e-141 506.1 697 58.1
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 8.6e-134 481.9 764 52.2
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 5.6e-101 372.9 593 46.2
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 6.5e-57 226.5 777 30.6
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 8.0e-55 219.5 826 29.7
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 3.3e-53 214.2 764 31.3
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 7.5e-53 213.0 764 30.4
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 1.3e-52 212.2 822 29.3
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 1.7e-52 211.8 743 30.6
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 2.2e-52 211.5 761 30.1
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 3.7e-52 210.7 729 30.2
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 8.2e-52 209.5 759 29.8
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 3.1e-51 207.6 742 30.5
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 1.6e-50 205.3 767 29.1
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 5.9e-50 203.4 774 30.6
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 4.2e-48 197.2 778 29.0
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 3.6e-47 194.1 847 28.5
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 4.7e-47 193.7 882 28.2
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 8.0e-47 193.0 766 28.2
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 1.2e-45 189.1 785 27.8
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 4.4e-45 187.2 761 28.3
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 2.8e-44 184.5 760 27.9
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 2.4e-43 181.4 914 28.8
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 5.4e-43 180.3 769 28.0
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 7.7e-42 176.4 749 27.8
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.3e-41 175.6 788 28.0
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 1.7e-41 175.3 773 27.3
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 1.1e-40 172.6 775 31.6
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 1.5e-40 172.2 768 27.1
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 1.9e-40 171.8 926 26.0
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 2.5e-40 171.4 678 28.5
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 1.6e-39 168.7 759 27.7
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 2.1e-39 168.3 841 26.5
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 2.1e-39 168.3 785 27.4
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 2.1e-39 168.3 785 27.4
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 1.4e-38 165.6 738 26.6
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 1.8e-38 165.2 673 30.5
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 2.3e-38 164.9 769 28.1
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 4.0e-38 164.1 780 28.6
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 8.8e-38 162.9 782 28.6
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 1.5e-37 162.2 765 29.0
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 5.7e-37 160.2 657 28.8
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 7.5e-37 159.8 855 26.0
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 6.3e-36 156.8 655 28.9
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 1.1e-35 156.0 690 27.4
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 1.8e-35 155.2 475 34.5
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 2.4e-35 154.8 652 28.7
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 3.1e-35 154.5 764 26.7
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 5.4e-35 153.7 159 56.6
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 1.2e-34 152.5 730 25.9
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 2.0e-34 151.8 418 32.1
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 2.7e-34 151.4 839 26.1
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 8.6e-33 146.4 764 27.7
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 8.6e-33 146.4 732 24.7
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 8.6e-33 146.4 725 27.2
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 1.5e-32 145.6 657 28.2
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 2.5e-32 144.8 865 25.3
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 1.2e-31 142.5 737 26.5
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 1.2e-31 142.5 649 27.9
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 1.6e-31 142.1 674 27.0
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 4.7e-31 140.6 724 24.7
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 1.8e-30 138.7 758 26.0
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 4.0e-30 137.5 743 26.9
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 5.2e-30 137.1 752 26.2
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 6.8e-30 136.7 757 26.0
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 1.2e-29 136.0 667 26.4
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 1.2e-29 136.0 819 24.8
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 4.4e-29 134.0 796 24.5
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 7.5e-29 133.3 755 26.0
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 9.8e-29 132.9 365 31.2
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 9.8e-29 132.9 754 26.5
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 1.3e-28 132.5 734 24.9
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 1.7e-28 132.1 666 26.0
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 2.2e-28 131.7 744 26.1
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 2.2e-28 131.7 784 26.1
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 2.9e-28 131.3 649 27.1
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 3.7e-28 131.0 740 24.7
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 3.7e-28 131.0 759 25.8
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 3.7e-28 131.0 540 26.7
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 1.4e-27 129.0 734 25.2
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 9.2e-27 126.3 785 25.4
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 5.0e-25 120.6 781 24.2
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 8.6e-25 119.8 365 33.4
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 1.2e-23 115.9 748 25.3
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 2.8e-23 114.8 82 68.3
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 3.6e-23 114.4 816 24.5
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 4.7e-23 114.0 350 32.6
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 8.0e-23 113.2 743 26.6
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 8.0e-23 113.2 81 66.7
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 1.0e-22 112.8 363 30.9
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 1.0e-22 112.8 81 69.1
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 3.1e-22 111.3 710 24.9
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 6.8e-22 110.2 498 27.3
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 1.5e-21 109.0 622 25.1
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 2.0e-21 108.6 596 26.2
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 7.5e-21 106.7 75 69.3
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 2.2e-20 105.1 82 65.9
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 4.9e-20 104.0 705 25.4
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 6.4e-20 103.6 798 23.7
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 3.2e-19 101.3 81 64.2
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 4.1e-19 100.9 704 23.2
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 2.3e-17 95.1 82 59.8
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 8.6e-17 93.2 81 59.3
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 1.5e-16 92.4 930 23.7
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 4.3e-16 90.9 817 24.1
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 4.3e-16 90.9 760 23.4
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 5.6e-16 90.5 634 24.4
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 7.3e-16 90.1 608 24.5
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 9.5e-16 89.7 84 57.1
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 1.6e-15 89.0 80 58.8
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 1.1e-14 86.3 82 53.7
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 1.8e-14 85.5 85 51.8
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 3.1e-14 84.7 928 22.3
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 3.4e-13 81.3 85 48.2
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 1.3e-12 79.3 346 27.2
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 6.4e-12 77.0 656 21.6
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 6.4e-12 77.0 69 55.1
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 1.1e-11 76.3 84 46.4
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 1.9e-11 75.5 741 23.3
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 1.6e-10 72.4 945 22.0
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 6.0e-10 70.5 686 23.6
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 1.0e-09 69.7 108 40.7
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 6.6e-09 67.0 733 25.0
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 1.9e-08 65.5 369 24.9
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 1.2e-07 62.8 750 23.9
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 1.2e-07 62.8 35 77.1
Cpa.g.sc10.163 Carica papaya HOM05D004831 ORTHO05D003975 3.1e-06 58.2 56 58.9
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 6.8e-06 57.0 699 23.6


User provided reference genes

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