Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G27720 Arabidopsis lyrata HOM05D009689 ORTHO05D012057 3.3e-132 474.9 224 100.0
CARHR016140 Cardamine hirsuta HOM05D009689 ORTHO05D012057 1.6e-78 296.6 229 69.0
Carub.0001s1538 Capsella rubella HOM05D009689 ORTHO05D012057 1.1e-69 267.3 224 61.2
AT1G15630 Arabidopsis thaliana HOM05D009689 ORTHO05D012057 1.6e-49 200.3 235 50.6
Carub.0001s1540 Capsella rubella HOM05D009689 ORTHO05D012057 9.6e-47 191.0 183 61.2
AT1G15610 Arabidopsis thaliana HOM05D009689 ORTHO05D012057 4.8e-46 188.7 202 54.5
CARHR016150 Cardamine hirsuta HOM05D009689 ORTHO05D012057 8.4e-43 177.9 236 47.9
AT1G15620 Arabidopsis thaliana HOM05D009689 ORTHO05D012057 4.2e-42 175.6 233 47.6
AL1G27740 Arabidopsis lyrata HOM05D009689 ORTHO05D012057 7.1e-42 174.9 229 47.6
Carub.0001s1539 Capsella rubella HOM05D009689 ORTHO05D012057 7.9e-41 171.4 226 47.3
AL1G27730 Arabidopsis lyrata HOM05D009689 ORTHO05D012057 6.6e-40 168.3 213 48.4
AT1G15640 Arabidopsis thaliana HOM05D009689 ORTHO05D012057 1.4e-37 160.6 238 45.4
Carub.0001s1541 Capsella rubella HOM05D009689 ORTHO05D012057 9.0e-37 157.9 229 45.9
BolC5t30117H Brassica oleracea HOM05D009689 ORTHO05D012057 9.9e-36 154.5 232 41.8
BraA06t24350Z Brassica rapa HOM05D009689 ORTHO05D012057 2.2e-35 153.3 232 41.4
BcaC05g25639 Brassica carinata HOM05D009689 ORTHO05D012057 1.9e-34 150.2 232 41.4
A06p11650 Brassica napus HOM05D009689 ORTHO05D012057 1.9e-34 150.2 226 41.2
AL1G52120 Arabidopsis lyrata HOM05D009689 ORTHO05D031403 2.5e-31 139.8 199 46.7
AT1G15600 Arabidopsis thaliana HOM05D009689 ORTHO05D012057 5.6e-31 138.7 213 43.2
AT1G44010 Arabidopsis thaliana HOM05D009689 ORTHO05D031403 2.8e-30 136.3 201 45.8
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 3.4e-28 129.4 226 38.9
Carub.0001s1542 Capsella rubella HOM05D009689 ORTHO05D012057 1.3e-27 127.5 191 47.1
Carub.0001s1537 Capsella rubella HOM05D009689 ORTHO05D012057 2.3e-24 116.7 157 44.6
Carub.0001s1543 Capsella rubella HOM05D009689 ORTHO05D012057 1.9e-23 113.6 182 42.3
Carub.0001s3496 Capsella rubella HOM05D009689 ORTHO05D031403 4.1e-21 105.9 188 39.9
AT1G15625 Arabidopsis thaliana HOM05D009689 ORTHO05D012057 2.0e-20 103.6 184 39.1
Thhalv10009791m.g Eutrema salsugineum HOM05D009689 ORTHO05D012057 1.3e-19 100.9 187 42.2
AL1G27710 Arabidopsis lyrata HOM05D000459 ORTHO05D017393 3.8e-11 72.8 183 35.5
Carub.0001s1536 Capsella rubella HOM05D000459 ORTHO05D017393 2.5e-10 70.1 178 31.5
Sp4g14340 Schrenkiella parvula HOM05D000459 ORTHO05D021643 4.6e-09 65.9 149 35.6
AT1G15590 Arabidopsis thaliana HOM05D000459 ORTHO05D017393 6.1e-09 65.5 152 37.5
Sc15g0001230 Simmondsia chinensis HOM05D000459 ORTHO05D002429 1.0e-08 64.7 237 30.0
SHI18613 Sapria himalayana HOM05D000459 ORTHO05D002429 2.3e-08 63.5 63 50.8
Sp5g16335 Schrenkiella parvula HOM05D009689 ORTHO05D012057 5.1e-08 62.4 64 43.8
BcaC09g52050 Brassica carinata HOM05D000459 ORTHO05D002429 8.8e-08 61.6 93 37.6
A01p05790 Brassica napus HOM05D000459 ORTHO05D002429 8.8e-08 61.6 71 45.1
C01p06360 Brassica napus HOM05D000459 ORTHO05D002429 8.8e-08 61.6 71 45.1
BolC1t00632H Brassica oleracea HOM05D000459 ORTHO05D002429 8.8e-08 61.6 71 45.1
BraA01t00548Z Brassica rapa HOM05D000459 ORTHO05D002429 8.8e-08 61.6 71 45.1
Carub.0007s0795 Capsella rubella HOM05D000459 ORTHO05D002429 8.8e-08 61.6 88 37.5
Aqoxy4G02245 Aquilegia oxysepala HOM05D000459 ORTHO05D006117 2.0e-07 60.5 146 31.5
A08p18110 Brassica napus HOM05D000459 ORTHO05D002429 2.0e-07 60.5 82 42.7
Sp7g30370 Schrenkiella parvula HOM05D000459 ORTHO05D002429 2.0e-07 60.5 88 38.6
BraA08t33763Z Brassica rapa HOM05D000459 ORTHO05D002429 2.6e-07 60.1 82 42.7
CDE07G0909 Ceratophyllum demersum HOM05D000459 ORTHO05D002429 2.6e-07 60.1 174 29.9
AUR62011610 Chenopodium quinoa HOM05D000459 ORTHO05D002429 2.6e-07 60.1 68 41.2
AUR62016427 Chenopodium quinoa HOM05D000459 ORTHO05D002429 2.6e-07 60.1 68 41.2
Thhalv10025242m.g Eutrema salsugineum HOM05D000459 ORTHO05D002429 2.6e-07 60.1 84 39.3
BcaC01g01012 Brassica carinata HOM05D000459 ORTHO05D002429 4.4e-07 59.3 82 42.7
C03p87250 Brassica napus HOM05D000459 ORTHO05D002429 4.4e-07 59.3 82 42.7
BolC3t21026H Brassica oleracea HOM05D000459 ORTHO05D002429 4.4e-07 59.3 82 42.7
AT1G80400 Arabidopsis thaliana HOM05D000459 ORTHO05D002429 5.7e-07 58.9 246 26.0
THA.LOC104812473 Tarenaya hassleriana HOM05D000459 ORTHO05D002429 5.7e-07 58.9 71 43.7
Aa31LG4G670 Aethionema arabicum HOM05D000459 ORTHO05D002429 7.4e-07 58.5 183 29.5
TPR.G37155 Trifolium pratense HOM05D000459 ORTHO05D002429 7.4e-07 58.5 267 25.5
AL7G19170 Arabidopsis lyrata HOM05D000459 ORTHO05D002429 9.7e-07 58.2 84 40.5
AT4G32600 Arabidopsis thaliana HOM05D000459 ORTHO05D002429 9.7e-07 58.2 84 40.5
BcaB05g25271 Brassica carinata HOM05D000459 ORTHO05D002429 9.7e-07 58.2 178 29.2
BcaC03g15970 Brassica carinata HOM05D000459 ORTHO05D002429 9.7e-07 58.2 184 28.8
CARHR074840 Cardamine hirsuta HOM05D000459 ORTHO05D002429 9.7e-07 58.2 60 53.3
BcaB03g12753 Brassica carinata HOM05D000459 ORTHO05D002429 1.3e-06 57.8 68 42.6
Carub.0002s2717 Capsella rubella HOM05D000459 ORTHO05D002429 1.3e-06 57.8 243 28.8
Ah.01g020990 Amaranthus hybridus HOM05D002927 ORTHO05D003841 1.7e-06 57.4 183 26.2
EL10Ac9g21979 Beta vulgaris HOM05D000459 ORTHO05D002429 1.7e-06 57.4 64 42.2
Sp5g35410 Schrenkiella parvula HOM05D000459 ORTHO05D002429 1.7e-06 57.4 60 51.7
AL2G41100 Arabidopsis lyrata HOM05D000459 ORTHO05D002429 2.2e-06 57.0 251 26.3
CARHR240570 Cardamine hirsuta HOM05D000459 ORTHO05D002429 2.2e-06 57.0 89 36.0
CDE06G0159 Ceratophyllum demersum HOM05D000459 ORTHO05D002429 2.2e-06 57.0 227 26.9
GSVIVG01017155001 Vitis vinifera HOM05D000459 ORTHO05D002429 2.2e-06 57.0 153 31.4
Lj5g0025665 Lotus japonicus HOM05D000459 ORTHO05D002429 2.8e-06 56.6 198 26.8
A09p61300 Brassica napus HOM05D000459 ORTHO05D017393 3.7e-06 56.2 124 34.7
BraA09t41501Z Brassica rapa HOM05D000459 ORTHO05D017393 3.7e-06 56.2 124 33.9
DCAR_001500 Daucus carota HOM05D000459 ORTHO05D002429 3.7e-06 56.2 184 28.8
Thhalv10018651m.g Eutrema salsugineum HOM05D000459 ORTHO05D002429 3.7e-06 56.2 178 28.7
Os09g0323100 Oryza sativa ssp. japonica HOM05D000459 ORTHO05D002429 3.7e-06 56.2 63 47.6
SGA_v2.0_scaffold169G38631 Striga asiatica HOM05D000459 ORTHO05D002429 3.7e-06 56.2 78 42.3
Aa31sc91G70 Aethionema arabicum HOM05D000459 ORTHO05D002429 4.8e-06 55.8 66 43.9
A02p23590 Brassica napus HOM05D000459 ORTHO05D002429 4.8e-06 55.8 184 28.3
C02p37350 Brassica napus HOM05D000459 ORTHO05D002429 4.8e-06 55.8 184 28.3
BolC2t09745H Brassica oleracea HOM05D000459 ORTHO05D002429 4.8e-06 55.8 184 28.3
BraA02t07351Z Brassica rapa HOM05D000459 ORTHO05D002429 4.8e-06 55.8 184 28.3
Lsat_1_v5_gn_3_25641 Lactuca sativa HOM05D000459 ORTHO05D002429 4.8e-06 55.8 178 28.1
PSO063G1800 Papaver somniferum HOM05D000459 ORTHO05D002429 4.8e-06 55.8 63 46.0
PSO782G2737 Papaver somniferum HOM05D000459 ORTHO05D002429 4.8e-06 55.8 63 46.0
C05p13800 Brassica napus HOM05D000459 ORTHO05D021643 6.3e-06 55.5 134 27.6
CSS0006672 Camellia sinensis var. sinensis HOM05D000459 ORTHO05D002429 6.3e-06 55.5 63 46.0
Haze_21620 Corylus avellana HOM05D000459 ORTHO05D002429 6.3e-06 55.5 63 47.6
Gorai.013G238400 Gossypium raimondii HOM05D000459 ORTHO05D002429 6.3e-06 55.5 66 45.5
Aqoxy7G01858 Aquilegia oxysepala HOM05D000459 ORTHO05D002429 8.2e-06 55.1 71 36.6
Hma1.2p1_2171F.1_g315990 Hydrangea macrophylla HOM05D000459 ORTHO05D002429 8.2e-06 55.1 60 43.3
GSVIVG01017156001 Vitis vinifera HOM05D000459 ORTHO05D002429 8.2e-06 55.1 169 30.2


User provided reference genes

Program Settings