Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 4.0e-127 458.4 279 100.0
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 9.9e-118 427.2 279 93.5
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 6.4e-109 397.9 280 86.1
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 1.4e-108 396.7 281 80.1
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 4.0e-103 378.6 283 79.9
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 1.3e-101 373.6 280 80.4
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 5.5e-100 368.2 280 75.0
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 9.3e-100 367.5 235 84.3
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 9.3e-100 367.5 235 84.3
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 3.3e-97 359.0 236 82.6
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 2.1e-96 356.3 285 78.2
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 3.7e-96 355.5 282 73.4
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 1.9e-92 343.2 282 80.1
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 2.1e-91 339.7 284 76.1
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 1.4e-84 317.0 284 74.6
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 1.4e-84 317.0 284 74.6
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 1.4e-76 290.4 227 73.1
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 5.3e-71 271.9 234 74.8
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 1.3e-69 267.3 187 78.6
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 3.2e-60 236.1 229 61.1
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 8.0e-59 231.5 274 52.2
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 1.0e-58 231.1 272 60.7
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 1.8e-58 230.3 180 75.6
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 6.7e-58 228.4 188 71.3
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 5.7e-57 225.3 154 79.9
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 1.4e-55 220.7 272 52.9
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.8e-55 220.3 283 49.5
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 1.8e-55 220.3 261 54.8
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 2.4e-55 219.9 269 55.0
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 3.1e-55 219.5 289 51.9
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 5.3e-55 218.8 259 55.6
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 7.0e-55 218.4 264 52.3
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 1.2e-54 217.6 214 56.5
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 2.7e-54 216.5 241 54.8
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 3.5e-54 216.1 283 51.6
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 7.7e-54 214.9 264 54.9
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 1.0e-53 214.5 215 57.2
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 1.7e-53 213.8 215 57.7
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 2.9e-53 213.0 213 58.7
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 3.2e-52 209.5 156 76.3
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 4.2e-52 209.1 215 56.7
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 6.1e-51 205.3 215 57.2
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 8.0e-51 204.9 275 48.4
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 3.0e-50 203.0 213 54.0
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 3.0e-50 203.0 275 47.3
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 7.5e-49 198.4 216 53.7
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 9.8e-49 198.0 211 54.5
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.7e-48 197.2 244 50.0
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 2.8e-48 196.4 208 53.8
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 3.7e-48 196.1 203 52.2
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 6.3e-48 195.3 215 51.6
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 6.3e-48 195.3 217 53.5
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 8.3e-48 194.9 222 52.3
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 8.3e-48 194.9 228 51.8
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 1.1e-47 194.5 227 51.5
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 1.1e-47 194.5 189 59.3
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 1.1e-47 194.5 191 56.5
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.4e-47 194.1 261 53.6
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 1.4e-47 194.1 214 51.4
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 3.1e-47 193.0 184 59.2
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 3.1e-47 193.0 199 54.8
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 5.4e-47 192.2 242 55.0
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 7.0e-47 191.8 212 54.7
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 7.0e-47 191.8 228 51.3
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 9.1e-47 191.4 208 55.3
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 9.1e-47 191.4 217 53.0
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 1.2e-46 191.0 221 53.8
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 2.0e-46 190.3 238 50.4
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 3.5e-46 189.5 263 46.0
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 4.5e-46 189.1 215 52.6
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 4.5e-46 189.1 187 56.7
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 5.9e-46 188.7 231 50.6
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 5.9e-46 188.7 231 50.6
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 1.0e-45 188.0 231 48.1
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 1.0e-45 188.0 231 50.6
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 1.0e-45 188.0 211 54.0
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 1.3e-45 187.6 183 55.2
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 1.3e-45 187.6 188 56.9
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 2.3e-45 186.8 224 49.6
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 2.3e-45 186.8 197 53.8
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 5.0e-45 185.7 195 51.3
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 6.5e-45 185.3 232 54.3
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 6.5e-45 185.3 218 50.9
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 1.9e-44 183.7 192 52.1
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 1.9e-44 183.7 222 49.1
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 2.5e-44 183.3 227 48.5
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 5.5e-44 182.2 214 52.3
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 7.2e-44 181.8 216 51.4
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 2.1e-43 180.3 188 55.3
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 3.6e-43 179.5 203 50.2
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 4.7e-43 179.1 240 52.9
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 8.0e-43 178.3 214 50.0
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 1.0e-42 177.9 229 50.7
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 1.8e-42 177.2 216 53.2
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 1.8e-42 177.2 261 49.0
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 2.3e-42 176.8 216 50.0
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 4.0e-42 176.0 197 50.8
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 4.4e-41 172.6 191 51.8
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 5.7e-41 172.2 206 50.0
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 1.3e-40 171.0 114 82.5
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 4.9e-40 169.1 171 55.6
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 4.9e-40 169.1 214 49.5
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 1.1e-39 167.9 218 46.8
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 1.4e-39 167.5 217 49.3
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 2.4e-39 166.8 212 50.0
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 7.0e-39 165.2 166 56.6
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 9.2e-39 164.9 213 46.0
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 2.0e-38 163.7 178 53.9
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 3.8e-37 159.5 212 47.2
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 4.3e-36 156.0 155 56.1
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 4.3e-36 156.0 177 53.7
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 9.5e-36 154.8 233 43.3
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 2.1e-35 153.7 156 53.2
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 2.1e-35 153.7 146 58.2
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 4.7e-35 152.5 207 45.9
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 6.1e-35 152.1 205 44.4
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 8.0e-35 151.8 115 66.1
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 1.0e-34 151.4 161 54.7
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 1.5e-33 147.5 218 43.1
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 2.6e-33 146.7 241 42.7
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 4.4e-33 146.0 224 43.3
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 7.5e-33 145.2 210 41.9
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 2.9e-32 143.3 161 53.4
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 1.1e-31 141.4 221 42.1
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 2.0e-30 137.1 231 40.7
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 4.6e-30 136.0 126 57.1
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 4.3e-28 129.4 198 42.9
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 3.1e-26 123.2 218 51.8
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 4.4e-25 119.4 76 82.9
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 4.9e-24 115.9 109 59.6
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 8.3e-24 115.2 260 44.2
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 4.1e-23 112.8 136 50.0
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 4.6e-22 109.4 132 51.5
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 8.1e-19 98.6 106 50.9
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 3.4e-17 93.2 112 50.9
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 5.4e-15 85.9 202 32.2
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 1.6e-14 84.3 66 62.1
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 2.1e-14 84.0 207 30.4
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 2.1e-14 84.0 195 39.0
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 2.3e-13 80.5 185 30.8
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 2.2e-08 63.9 83 45.8
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 8.4e-08 62.0 64 51.6
MCO14G074 Micromonas commoda HOM05D002282 ORTHO05D002403 8.4e-08 62.0 202 29.2
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 1.4e-07 61.2 241 27.4
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 1.2e-06 58.2 118 32.2
MD12G1094800 Malus domestica HOM05D002282 ORTHO05D002403 2.1e-06 57.4 57 56.1


User provided reference genes

Program Settings