Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G27420 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 2.8e-222 775.0 401 100.0
AT1G15330 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 2.9e-187 658.7 353 96.3
Carub.0001s1508 Capsella rubella HOM05D005464 ORTHO05D006803 1.0e-176 623.6 351 90.6
CARHR015860 Cardamine hirsuta HOM05D005464 ORTHO05D006803 5.1e-176 621.3 352 90.3
Sp1g13650 Schrenkiella parvula HOM05D005464 ORTHO05D006803 5.0e-171 604.7 353 87.8
BraA06t24313Z Brassica rapa HOM05D005464 ORTHO05D006803 1.6e-169 599.7 354 86.7
BcaC05g25470 Brassica carinata HOM05D005464 ORTHO05D006803 2.7e-169 599.0 356 87.4
A06p11340 Brassica napus HOM05D005464 ORTHO05D006803 3.6e-169 598.6 354 86.4
Thhalv10008048m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 4.8e-166 588.2 353 85.8
BolC5t30083H Brassica oleracea HOM05D005464 ORTHO05D006803 2.9e-163 578.9 354 84.2
C05p13460 Brassica napus HOM05D005464 ORTHO05D006803 1.5e-162 576.6 354 83.9
Aa31LG7G100 Aethionema arabicum HOM05D005464 ORTHO05D006803 6.5e-155 551.2 365 79.5
THA.LOC104812511 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 5.6e-130 468.4 364 67.6
Cfa001959 Carpinus fangiana HOM05D005464 ORTHO05D006803 6.4e-118 428.3 360 63.6
Atru.chr1.2934 Acer truncatum HOM05D005464 ORTHO05D006803 1.6e-116 423.7 384 59.4
CANSAT56G0380 Cannabis sativa HOM05D005464 ORTHO05D006803 1.0e-115 421.0 377 60.2
RcHm_v2.0_Chr2g0135251 Rosa chinensis HOM05D005464 ORTHO05D006803 3.0e-115 419.5 370 59.7
TWI12G0099 Tripterygium wilfordii HOM05D005464 ORTHO05D006803 3.0e-115 419.5 357 60.8
Manes.11G057000 Manihot esculenta HOM05D005464 ORTHO05D006803 9.5e-114 414.5 368 59.5
Cpa.g.sc10.270 Carica papaya HOM05D005464 ORTHO05D006803 8.1e-113 411.4 367 61.3
THA.LOC104812509 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 6.8e-112 408.3 370 59.2
COL.COLO4_11947 Corchorus olitorius HOM05D005464 ORTHO05D006803 8.9e-112 407.9 354 62.1
Psat5g302720 Pisum sativum HOM05D005464 ORTHO05D006803 8.9e-112 407.9 378 56.9
Lalb_Chr14g0373811 Lupinus albus HOM05D005464 ORTHO05D006803 1.2e-111 407.5 390 55.4
FvH4_6g29660 Fragaria vesca HOM05D005464 ORTHO05D006803 2.6e-111 406.4 377 57.0
TPR.G37199 Trifolium pratense HOM05D005464 ORTHO05D006803 2.6e-111 406.4 427 52.5
Medtr2g103910 Medicago truncatula HOM05D005464 ORTHO05D006803 5.8e-111 405.2 355 59.4
FAN05G5161 Fragaria x ananassa HOM05D005464 ORTHO05D006803 9.9e-111 404.4 366 57.7
VMungo1080G0510 Vigna mungo HOM05D005464 ORTHO05D006803 1.3e-110 404.1 360 59.2
Lj3g0027830 Lotus japonicus HOM05D005464 ORTHO05D006803 1.7e-110 403.7 390 55.4
Gorai.009G128200 Gossypium raimondii HOM05D005464 ORTHO05D006803 2.9e-110 402.9 367 59.1
Thecc.06G025100 Theobroma cacao HOM05D000467 ORTHO05D000379 4.9e-110 402.1 383 55.6
Haze_16562 Corylus avellana HOM05D005464 ORTHO05D006803 6.4e-110 401.7 384 58.6
Gohir.A05G123300 Gossypium hirsutum HOM05D005464 ORTHO05D006803 6.4e-110 401.7 367 59.1
Prupe.3G087600 Prunus persica HOM05D005464 ORTHO05D006803 1.4e-109 400.6 385 56.4
Glyma.13G365800 Glycine max HOM05D005464 ORTHO05D006803 1.9e-109 400.2 368 57.3
Phvul.005G178300 Phaseolus vulgaris HOM05D005464 ORTHO05D006803 4.1e-109 399.1 375 57.9
MD17G1212300 Malus domestica HOM05D005464 ORTHO05D006803 7.1e-109 398.3 382 57.3
FAN09G2673 Fragaria x ananassa HOM05D005464 ORTHO05D006803 9.2e-109 397.9 387 55.3
Glyma.15G007300 Glycine max HOM05D005464 ORTHO05D006803 1.2e-108 397.5 391 55.8
CiPaw.02G157400 Carya illinoinensis HOM05D005464 ORTHO05D006803 1.6e-108 397.1 330 64.2
Eucgr.J03066 Eucalyptus grandis HOM05D005464 ORTHO05D006803 2.1e-108 396.7 352 60.2
Ca_01055_v3 Cicer arietinum L. HOM05D005464 ORTHO05D006803 6.0e-108 395.2 366 56.3
GSVIVG01017342001 Vitis vinifera HOM05D005464 ORTHO05D006803 6.0e-108 395.2 343 60.1
Lsat_1_v5_gn_4_89921 Lactuca sativa HOM05D005464 ORTHO05D006803 1.3e-107 394.0 369 56.1
Lalb_Chr22g0350841 Lupinus albus HOM05D005464 ORTHO05D006803 1.3e-107 394.0 364 56.3
PGR031G2541 Punica granatum HOM05D005464 ORTHO05D006803 2.3e-107 393.3 384 55.2
Actinidia15983 Actinidia chinensis HOM05D005464 ORTHO05D006803 8.6e-107 391.3 362 56.9
ECA232G3027 Erigeron canadensis HOM05D005464 ORTHO05D006803 8.6e-107 391.3 371 54.7
Sed0012798 Sechium edule HOM05D005464 ORTHO05D006803 8.6e-107 391.3 364 56.9
Gohir.D05G124200 Gossypium hirsutum HOM05D005464 ORTHO05D006803 3.3e-106 389.4 367 57.8
FAN14G5059 Fragaria x ananassa HOM05D005464 ORTHO05D006803 7.3e-106 388.3 407 52.1
ClCG07G012450 Citrullus lanatus HOM05D005464 ORTHO05D006803 4.7e-105 385.6 370 55.7
Nitab4.5_0006769g0010 Nicotiana tabacum HOM05D005464 ORTHO05D006803 4.0e-104 382.5 364 56.6
HanXRQChr16g0500301 Helianthus annuus HOM05D005464 ORTHO05D006803 6.9e-104 381.7 357 55.7
PSO017G6540 Papaver somniferum HOM05D005464 ORTHO05D006803 6.9e-104 381.7 355 55.8
Rhsim12G0191100 Rhododendron simsii HOM05D005464 ORTHO05D006803 8.9e-104 381.3 371 56.1
PGSC0003DMG400028509 Solanum tuberosum HOM05D005464 ORTHO05D006803 2.0e-103 380.2 354 56.5
Migut.I00762 Erythranthe guttata HOM05D005464 ORTHO05D006803 2.6e-103 379.8 354 55.6
CAN.G1503.8 Capsicum annuum HOM05D005464 ORTHO05D006803 3.4e-103 379.4 362 55.5
Nitab4.5_0000373g0080 Nicotiana tabacum HOM05D005464 ORTHO05D006803 3.4e-103 379.4 358 57.0
Solyc06g068160.3 Solanum lycopersicum HOM05D005464 ORTHO05D006803 3.4e-103 379.4 356 56.7
DCAR_021346 Daucus carota HOM05D005464 ORTHO05D006803 4.4e-103 379.0 368 53.8
PSO170G0224 Papaver somniferum HOM05D005464 ORTHO05D006803 7.6e-103 378.3 357 55.5
Nn8g39510 Nelumbo nucifera HOM05D005464 ORTHO05D006803 9.9e-103 377.9 344 57.6
Sopen06g025430 Solanum pennellii HOM05D005464 ORTHO05D006803 2.9e-102 376.3 356 56.5
AUR62016335 Chenopodium quinoa HOM05D005464 ORTHO05D006803 1.4e-101 374.0 370 53.0
MSTRG.22747 Avicennia marina HOM05D005464 ORTHO05D006803 1.9e-101 373.6 346 57.2
BcaB02g08721 Brassica carinata HOM05D005464 ORTHO05D006803 5.4e-101 372.1 356 55.6
PGR102G0885 Punica granatum HOM05D005464 ORTHO05D006803 5.4e-101 372.1 347 56.2
C06p54250 Brassica napus HOM05D005464 ORTHO05D006803 7.1e-101 371.7 370 55.7
BcaC08g47570 Brassica carinata HOM05D005464 ORTHO05D006803 9.3e-101 371.3 364 55.8
BolC6t40438H Brassica oleracea HOM05D005464 ORTHO05D006803 9.3e-101 371.3 364 55.8
CsaV3_4G001710 Cucumis sativus L. HOM05D005464 ORTHO05D006803 2.1e-100 370.2 383 53.3
Aqoxy7G02293 Aquilegia oxysepala HOM05D005464 ORTHO05D006803 7.8e-100 368.2 349 54.7
SGA_v2.0_scaffold5G02698 Striga asiatica HOM05D005464 ORTHO05D006803 1.7e-99 367.1 359 54.9
AT1G80090 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 3.0e-99 366.3 354 55.6
Hund06557 Selenicereus undatus HOM05D005464 ORTHO05D006803 3.9e-99 365.9 353 53.5
EL10Ac9g21898 Beta vulgaris HOM05D005464 ORTHO05D006803 6.6e-99 365.2 358 54.2
MBI14_g16402_MAGBIO Magnolia biondii HOM05D005464 ORTHO05D006803 8.7e-99 364.8 360 54.7
A07p45420 Brassica napus HOM05D005464 ORTHO05D006803 1.5e-98 364.0 370 54.1
Eucgr.F03878 Eucalyptus grandis HOM05D005464 ORTHO05D006803 7.3e-98 361.7 372 54.3
unitig_0.g1114 Utricularia gibba HOM05D005464 ORTHO05D006803 1.6e-97 360.5 354 55.6
arahy.Tifrunner.gnm1.ann1.JVJR89 Arachis hypogaea HOM05D005464 ORTHO05D006803 2.8e-97 359.8 358 54.5
arahy.Tifrunner.gnm1.ann1.Y6ZEHB Arachis hypogaea HOM05D005464 ORTHO05D006803 2.8e-97 359.8 358 54.5
AUR62011516 Chenopodium quinoa HOM05D005464 ORTHO05D006803 2.8e-97 359.8 329 55.9
MELO3C017863.2 Cucumis melo HOM05D005464 ORTHO05D006803 6.2e-97 358.6 352 56.0
Thhalv10019455m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 1.2e-95 354.4 351 53.6
Peaxi162Scf00207g00638 Petunia axillaris HOM05D005464 ORTHO05D006803 4.5e-95 352.4 344 56.1
SHI11227 Sapria himalayana HOM05D005464 ORTHO05D006803 8.4e-94 348.2 341 56.6
vmacro16896 Vaccinium macrocarpon HOM05D005464 ORTHO05D006803 8.4e-94 348.2 374 51.6
CARHR074410 Cardamine hirsuta HOM05D005464 ORTHO05D006803 1.8e-91 340.5 317 55.8
Dinv30606 Davidia involucrata HOM05D005464 ORTHO05D006803 2.3e-91 340.1 356 52.8
Sp5g35710 Schrenkiella parvula HOM05D005464 ORTHO05D006803 3.3e-90 336.3 317 54.9
HPP92_016981 Vanilla planifolia HOM05D005464 ORTHO05D006803 1.3e-89 334.3 338 53.3
Os02g0158900 Oryza sativa ssp. japonica HOM05D005464 ORTHO05D006803 4.0e-88 329.3 361 50.7
Zm00001eb232620 Zea mays HOM05D005464 ORTHO05D006803 5.3e-88 328.9 374 48.9
BraA07t32046Z Brassica rapa HOM05D005464 ORTHO05D006803 6.9e-88 328.6 364 51.1
ATR0800G035 Amborella trichopoda HOM05D005464 ORTHO05D006803 3.4e-87 326.2 360 48.1
Duzib160G0683 Durio zibethinus HOM05D005464 ORTHO05D006803 1.1e-85 321.2 304 57.9
Carub.0002s2743 Capsella rubella HOM05D005464 ORTHO05D006803 5.3e-80 302.4 296 54.7
Ciclev10026304m.g Citrus clementina HOM05D005464 ORTHO05D006803 1.2e-76 291.2 252 62.3
Aa31LG4G370 Aethionema arabicum HOM05D005464 ORTHO05D006803 8.7e-75 285.0 294 51.4
Mapoly0007s0086 Marchantia polymorpha HOM05D005464 ORTHO05D006803 1.1e-74 284.6 366 44.0
SMO201G0050 Selaginella moellendorffii HOM05D005464 ORTHO05D006803 8.2e-73 278.5 362 43.9
BcaC05g25495 Brassica carinata HOM05D005464 ORTHO05D006803 1.9e-69 267.3 170 80.0
Pp3c3_23830 Physcomitrium patens HOM05D005464 ORTHO05D006803 8.7e-67 258.5 348 42.5
QL05p029765 Quercus lobata HOM05D005464 ORTHO05D006803 9.1e-64 248.4 225 60.0
QL05p030112 Quercus lobata HOM05D005464 ORTHO05D006803 9.1e-64 248.4 225 60.0
Oeu045134.1 Olea europaea HOM05D005464 ORTHO05D006803 5.9e-63 245.7 251 52.6
AagrBONN_evm.TU.Sc2ySwM_368.1642 Anthoceros agrestis HOM05D005464 ORTHO05D006803 2.4e-56 223.8 353 37.4
Lj9P500T36 Lonicera japonica HOM05D005464 ORTHO05D006803 1.5e-55 221.1 211 54.0
Atru.chr1.2936 Acer truncatum HOM05D005464 ORTHO05D006803 1.7e-54 217.6 225 54.2
Nn2g12091 Nelumbo nucifera HOM05D000467 ORTHO05D000379 1.6e-52 211.1 233 49.8
PGR102G1999 Punica granatum HOM05D005464 ORTHO05D006803 3.6e-52 209.9 293 42.3
AagrBONN_evm.TU.Sc2ySwM_344.2189 Anthoceros agrestis HOM05D005464 ORTHO05D006803 1.3e-46 191.4 218 48.2
Sc06g0005910 Simmondsia chinensis HOM05D005464 ORTHO05D006803 1.2e-44 184.9 212 43.9
Sc06g0005900 Simmondsia chinensis HOM05D005464 ORTHO05D006803 1.5e-42 177.9 135 65.2
TAR383G0924 Trochodendron aralioides HOM05D005464 ORTHO05D006803 1.5e-42 177.9 125 70.4
VMungo1127G1748 Vigna mungo HOM05D005464 ORTHO05D006803 3.1e-40 170.2 199 47.7
CSS0011845 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 5.3e-40 169.5 141 61.0
CSS0036664 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 1.6e-39 167.9 141 60.3
HPP92_010901 Vanilla planifolia HOM05D005464 ORTHO05D006803 3.5e-39 166.8 225 40.4
Hma1.2p1_1144F.1_g261310 Hydrangea macrophylla HOM05D005464 ORTHO05D006803 7.7e-39 165.6 212 46.7
CBR_g24374 Chara braunii HOM05D005464 ORTHO05D006803 1.5e-37 161.4 323 33.4
Cc04_g04410 Coffea canephora HOM05D005464 ORTHO05D006803 9.4e-37 158.7 280 39.3
AL2G41450 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 1.6e-36 157.9 135 60.0
Pp3c13_16980 Physcomitrium patens HOM05D005464 ORTHO05D006803 1.7e-30 137.9 234 38.0
Psat1g035880 Pisum sativum HOM05D005464 ORTHO05D006803 6.3e-25 119.4 100 61.0
AL2G41440 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 4.1e-24 116.7 128 49.2
SEGI_27934 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 2.9e-22 110.5 273 28.2
TAR383G0332 Trochodendron aralioides HOM05D005464 ORTHO05D006803 4.3e-21 106.7 111 49.5
Psat6g000160 Pisum sativum HOM05D005464 ORTHO05D006803 1.6e-20 104.8 133 45.1
CBR_g38673 Chara braunii HOM05D005464 ORTHO05D006803 8.3e-17 92.4 245 29.4
QL05p030118 Quercus lobata HOM05D005464 ORTHO05D006803 2.0e-15 87.8 130 40.8
QL05p029759 Quercus lobata HOM05D005464 ORTHO05D006803 2.7e-15 87.4 130 40.8
SEGI_39315 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 1.3e-14 85.1 120 43.3
TWI38G1374 Tripterygium wilfordii HOM05D002177 ORTHO05D002257 1.2e-07 62.0 398 20.9
Nn1g00750 Nelumbo nucifera HOM05D005464 ORTHO05D006803 4.6e-07 60.1 73 45.2
FvH4_4g31760 Fragaria vesca HOM05D001741 ORTHO05D002196 6.0e-07 59.7 141 28.4
FAN12G1673 Fragaria x ananassa HOM05D001741 ORTHO05D002196 6.0e-07 59.7 141 28.4
RcHm_v2.0_Chr4g0440361 Rosa chinensis HOM05D001741 ORTHO05D002196 1.7e-06 58.2 100 33.0
RcHm_v2.0_Chr4g0440371 Rosa chinensis HOM05D001741 ORTHO05D002196 3.0e-06 57.4 142 28.2
TPR.G13768 Trifolium pratense HOM05D001741 ORTHO05D002196 5.0e-06 56.6 141 24.8
FAN17G1528 Fragaria x ananassa HOM05D001741 ORTHO05D002196 6.6e-06 56.2 141 27.7
Medtr2g103890 Medicago truncatula HOM05D005464 ORTHO05D006803 6.6e-06 56.2 73 42.5
Aqoxy5G03395 Aquilegia oxysepala HOM05D001741 ORTHO05D002196 8.6e-06 55.8 189 27.0
Aqoxy7G00969 Aquilegia oxysepala HOM05D001741 ORTHO05D002196 8.6e-06 55.8 189 27.0
FAN22G2407 Fragaria x ananassa HOM05D001741 ORTHO05D002196 8.6e-06 55.8 141 27.0


User provided reference genes

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