Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G27360 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 8.7e-25 116.3 65 100.0
AT1G15270 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 8.7e-25 116.3 65 100.0
Carub.0001s1503 Capsella rubella HOM05D006417 ORTHO05D008113 8.7e-25 116.3 65 100.0
BcaB03g13069 Brassica carinata HOM05D006417 ORTHO05D008113 9.6e-24 112.8 65 96.9
TAR626G0232 Trochodendron aralioides HOM05D006417 ORTHO05D008113 1.3e-23 112.5 65 95.4
BcaC07g38776 Brassica carinata HOM05D006417 ORTHO05D008113 1.6e-23 112.1 65 95.4
BcaC07g41515 Brassica carinata HOM05D006417 ORTHO05D008113 1.6e-23 112.1 65 95.4
A08p31670 Brassica napus HOM05D006417 ORTHO05D008113 1.6e-23 112.1 65 95.4
A09p61510 Brassica napus HOM05D006417 ORTHO05D008113 1.6e-23 112.1 65 95.4
CARHR015790 Cardamine hirsuta HOM05D006417 ORTHO05D008113 1.6e-23 112.1 65 95.4
MBI06_g06678_MAGBIO Magnolia biondii HOM05D006417 ORTHO05D008113 1.6e-23 112.1 65 93.8
Sp1g13580 Schrenkiella parvula HOM05D006417 ORTHO05D008113 1.6e-23 112.1 65 95.4
Aa31LG4G200 Aethionema arabicum HOM05D006417 ORTHO05D008113 2.8e-23 111.3 65 95.4
BcaC05g25455 Brassica carinata HOM05D006417 ORTHO05D008113 2.8e-23 111.3 65 95.4
BcaC05g25459 Brassica carinata HOM05D006417 ORTHO05D008113 2.8e-23 111.3 65 95.4
Ciclev10026914m.g Citrus clementina HOM05D006417 ORTHO05D008113 3.7e-23 110.9 65 95.4
Hma1.2p1_2039F.1_g312170 Hydrangea macrophylla HOM05D006417 ORTHO05D008113 3.7e-23 110.9 63 95.2
FAN14G4157 Fragaria x ananassa HOM05D006417 ORTHO05D008113 8.1e-23 109.8 65 93.8
Gohir.A09G082600 Gossypium hirsutum HOM05D006417 ORTHO05D008113 1.1e-22 109.4 65 93.8
Prupe.3G069900 Prunus persica HOM05D006417 ORTHO05D008113 1.1e-22 109.4 65 92.3
MD17G1194100 Malus domestica HOM05D006417 ORTHO05D008113 1.8e-22 108.6 65 92.3
SalBow2G2995 Salvia bowleyana HOM05D006417 ORTHO05D008113 1.8e-22 108.6 65 92.3
Aqoxy7G03790 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 2.4e-22 108.2 65 90.8
FAN02G0035 Fragaria x ananassa HOM05D006417 ORTHO05D008113 2.4e-22 108.2 65 92.3
Gohir.D09G082500 Gossypium hirsutum HOM05D006417 ORTHO05D008113 2.4e-22 108.2 65 92.3
RcHm_v2.0_Chr2g0138111 Rosa chinensis HOM05D006417 ORTHO05D008113 2.4e-22 108.2 65 92.3
Aqoxy7G01686 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 3.1e-22 107.8 65 90.8
Sed0026778 Sechium edule HOM05D006417 ORTHO05D008113 3.1e-22 107.8 65 90.8
ATR0724G030 Amborella trichopoda HOM05D006417 ORTHO05D008113 4.0e-22 107.5 65 90.8
Medtr4g012800 Medicago truncatula HOM05D006417 ORTHO05D008113 4.0e-22 107.5 65 89.2
Psat7g250440 Pisum sativum HOM05D006417 ORTHO05D008113 4.0e-22 107.5 65 89.2
FAN05G1876 Fragaria x ananassa HOM05D006417 ORTHO05D008113 5.3e-22 107.1 65 90.8
Lj3g0004039 Lotus japonicus HOM05D006417 ORTHO05D008113 5.3e-22 107.1 65 89.2
Lalb_Chr01g0012721 Lupinus albus HOM05D006417 ORTHO05D008113 5.3e-22 107.1 65 89.2
Lj5A59T64 Lonicera japonica HOM05D006417 ORTHO05D008113 6.9e-22 106.7 65 90.8
Thecc.06G089800 Theobroma cacao HOM05D006417 ORTHO05D008113 6.9e-22 106.7 65 90.8
CsaV3_3G010850 Cucumis sativus L. HOM05D006417 ORTHO05D008113 1.2e-21 105.9 65 87.7
Potri.001G181800 Populus trichocarpa HOM05D006417 ORTHO05D008113 1.2e-21 105.9 65 90.8
Sed0004760 Sechium edule HOM05D006417 ORTHO05D008113 1.5e-21 105.5 65 87.7
CANSAT56G0242 Cannabis sativa HOM05D006417 ORTHO05D008113 2.0e-21 105.1 65 87.7
A06p11260 Brassica napus HOM05D006417 ORTHO05D008113 2.6e-21 104.8 62 93.5
C08p45090 Brassica napus HOM05D006417 ORTHO05D008113 2.6e-21 104.8 62 93.5
BolC8t52055H Brassica oleracea HOM05D006417 ORTHO05D008113 2.6e-21 104.8 62 93.5
BraA06t24306Z Brassica rapa HOM05D006417 ORTHO05D008113 2.6e-21 104.8 62 93.5
BraA09t41524Z Brassica rapa HOM05D006417 ORTHO05D008113 2.6e-21 104.8 62 93.5
FAN09G4522 Fragaria x ananassa HOM05D006417 ORTHO05D008113 2.6e-21 104.8 65 89.2
ClCG05G003220 Citrullus lanatus HOM05D006417 ORTHO05D008113 3.4e-21 104.4 65 86.2
Migut.D01026 Erythranthe guttata HOM05D006417 ORTHO05D008113 3.4e-21 104.4 65 89.2
Glyma.08G206000 Glycine max HOM05D006417 ORTHO05D008113 3.4e-21 104.4 65 86.2
BolC5t30076H Brassica oleracea HOM05D006417 ORTHO05D008113 4.5e-21 104.0 62 93.5
ClCG02G009660 Citrullus lanatus HOM05D006417 ORTHO05D008113 4.5e-21 104.0 65 86.2
Manes.04G124600 Manihot esculenta HOM05D006417 ORTHO05D008113 4.5e-21 104.0 74 82.4
C08p17070 Brassica napus HOM05D006417 ORTHO05D008113 5.8e-21 103.6 60 93.3
BolC8t49333H Brassica oleracea HOM05D006417 ORTHO05D008113 5.8e-21 103.6 60 93.3
Glyma.07G005600 Glycine max HOM05D006417 ORTHO05D008113 5.8e-21 103.6 65 86.2
unitig_27.g25076 Utricularia gibba HOM05D006417 ORTHO05D008113 5.8e-21 103.6 65 87.7
HPP92_003724 Vanilla planifolia HOM05D002497 ORTHO05D002697 5.8e-21 103.6 64 87.5
RcHm_v2.0_Chr2g0106421 Rosa chinensis HOM05D006417 ORTHO05D008113 1.0e-20 102.8 65 87.7
Atru.chr1.3302 Acer truncatum HOM05D006417 ORTHO05D008113 1.3e-20 102.4 65 86.2
Phvul.010G150000 Phaseolus vulgaris HOM05D006417 ORTHO05D008113 1.3e-20 102.4 65 83.1
Dinv38039 Davidia involucrata HOM05D006417 ORTHO05D008113 1.7e-20 102.1 65 89.2
Aa31LG8G3190 Aethionema arabicum HOM05D006417 ORTHO05D008113 4.9e-20 100.5 65 87.7
AT3G16040 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 4.9e-20 100.5 65 87.7
CSS0028003 Camellia sinensis var. sinensis HOM05D006417 ORTHO05D008113 4.9e-20 100.5 59 93.2
Haze_16401 Corylus avellana HOM05D006417 ORTHO05D008113 4.9e-20 100.5 65 89.2
Gorai.006G098200 Gossypium raimondii HOM05D006417 ORTHO05D008113 4.9e-20 100.5 75 80.0
Hund06616 Selenicereus undatus HOM05D006417 ORTHO05D008113 4.9e-20 100.5 65 84.6
HanXRQChr04g0096081 Helianthus annuus HOM05D006417 ORTHO05D008113 8.4e-20 99.8 65 89.2
AL3G28690 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 1.1e-19 99.4 65 86.2
AL810U10020 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 1.1e-19 99.4 65 86.2
DCAR_023056 Daucus carota HOM05D006417 ORTHO05D008113 1.1e-19 99.4 62 87.1
Nn2g11755 Nelumbo nucifera HOM05D006417 ORTHO05D008113 1.1e-19 99.4 66 87.9
CiPaw.01G238100 Carya illinoinensis HOM05D006417 ORTHO05D008113 1.4e-19 99.0 65 87.7
Lsat_1_v5_gn_5_130340 Lactuca sativa HOM05D006417 ORTHO05D008113 1.9e-19 98.6 65 87.7
Glyma.20G047300 Glycine max HOM05D006417 ORTHO05D008113 2.5e-19 98.2 65 81.5
Lj3g0012949 Lotus japonicus HOM05D006417 ORTHO05D008113 2.5e-19 98.2 66 86.4
C05p50430 Brassica napus HOM05D006417 ORTHO05D008113 3.2e-19 97.8 65 86.2
Carub.0003s1577 Capsella rubella HOM05D006417 ORTHO05D008113 3.2e-19 97.8 65 84.6
CiPaw.02G150500 Carya illinoinensis HOM05D006417 ORTHO05D008113 3.2e-19 97.8 65 87.7
HanXRQChr12g0376701 Helianthus annuus HOM05D006417 ORTHO05D008113 3.2e-19 97.8 65 87.7
CARHR091200 Cardamine hirsuta HOM05D006417 ORTHO05D008113 5.5e-19 97.1 65 86.2
COL.COLO4_30395 Corchorus olitorius HOM05D006417 ORTHO05D008113 5.5e-19 97.1 65 84.6
FAN26G3442 Fragaria x ananassa HOM05D006417 ORTHO05D008113 5.5e-19 97.1 65 86.2
Thhalv10022282m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 7.1e-19 96.7 65 83.1
Migut.I00879 Erythranthe guttata HOM05D006417 ORTHO05D008113 9.3e-19 96.3 61 85.2
Eucgr.J02983 Eucalyptus grandis HOM05D006417 ORTHO05D008113 9.3e-19 96.3 60 88.3
Thhalv10009202m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 9.3e-19 96.3 93 66.7
Cpa.g.sc41.8 Carica papaya HOM05D006417 ORTHO05D008113 1.2e-18 95.9 71 77.5
Sc12g0009320 Simmondsia chinensis HOM05D006417 ORTHO05D008113 1.2e-18 95.9 65 81.5
Zm00001eb225700 Zea mays HOM05D006417 ORTHO05D008113 1.2e-18 95.9 63 88.9
Oeu063955.1 Olea europaea HOM05D006417 ORTHO05D008113 2.7e-18 94.7 65 86.2
Cc04_g03270 Coffea canephora HOM05D006417 ORTHO05D008113 6.0e-18 93.6 64 84.4
SalBow2G0478 Salvia bowleyana HOM05D008308 ORTHO05D008113 6.0e-18 93.6 58 86.2
AagrBONN_evm.TU.Sc2ySwM_117.2290 Anthoceros agrestis HOM05D006417 ORTHO05D008113 1.0e-17 92.8 65 78.5
EL10Ac9g22008 Beta vulgaris HOM05D006417 ORTHO05D008113 1.3e-17 92.4 65 78.5
Pp3c24_10010 Physcomitrium patens HOM05D006417 ORTHO05D008113 1.3e-17 92.4 64 78.1
Sp3g14390 Schrenkiella parvula HOM05D006417 ORTHO05D008113 1.3e-17 92.4 65 81.5
BcaNung06587 Brassica carinata HOM05D006417 ORTHO05D008113 1.8e-17 92.0 60 85.0
GSVIVG01017091001 Vitis vinifera HOM05D006417 ORTHO05D008113 3.0e-17 91.3 65 80.0
arahy.Tifrunner.gnm1.ann1.6441EL Arachis hypogaea HOM05D006417 ORTHO05D008113 5.1e-17 90.5 90 62.2
Pp3c23_11500 Physcomitrium patens HOM05D006417 ORTHO05D008113 8.7e-17 89.7 64 75.0
Peaxi162Scf00034g00611 Petunia axillaris HOM05D006417 ORTHO05D008113 1.5e-16 89.0 65 80.0
A05p33430 Brassica napus HOM05D006417 ORTHO05D008113 1.9e-16 88.6 63 81.0
PGSC0003DMG400007579 Solanum tuberosum HOM05D006417 ORTHO05D008113 2.5e-16 88.2 65 80.0
BcaC05g28917 Brassica carinata HOM05D006417 ORTHO05D008113 3.3e-16 87.8 74 74.3
Solyc12g043160.3 Solanum lycopersicum HOM05D006417 ORTHO05D008113 3.3e-16 87.8 65 80.0
SGA_v2.0_scaffold37G14829 Striga asiatica HOM05D006417 ORTHO05D008113 5.7e-16 87.0 61 78.7
FAN19G1924 Fragaria x ananassa HOM05D006417 ORTHO05D008113 7.4e-16 86.7 54 87.0
FvH4_1g16510 Fragaria vesca HOM05D006417 ORTHO05D008113 9.6e-16 86.3 54 87.0
Mapoly0091s0070 Marchantia polymorpha HOM05D006417 ORTHO05D008113 2.1e-15 85.1 62 74.2
DCAR_007563 Daucus carota HOM05D006417 ORTHO05D008113 3.7e-15 84.3 65 75.4
DCAR_026325 Daucus carota HOM05D006417 ORTHO05D008113 3.7e-15 84.3 65 75.4
ECA247G1523 Erigeron canadensis HOM05D001142 ORTHO05D004628 6.3e-15 83.6 55 87.3
Glyma.14G136351 Glycine max HOM05D006417 ORTHO05D008113 1.1e-14 82.8 60 75.0
CAN.G144.3 Capsicum annuum HOM05D006417 ORTHO05D008113 2.0e-13 78.6 60 78.3
DCAR_002649 Daucus carota HOM05D006417 ORTHO05D008113 2.0e-13 78.6 60 75.0
Lsat_1_v5_gn_1_35180 Lactuca sativa HOM05D006417 ORTHO05D008113 2.2e-12 75.1 54 79.6
ClCG11G012700 Citrullus lanatus HOM05D006417 ORTHO05D008113 7.2e-11 70.1 65 66.2
BraA08t35089Z Brassica rapa HOM05D006417 ORTHO05D008113 9.3e-11 69.7 40 95.0
Lalb_Chr04g0262751 Lupinus albus HOM05D006417 ORTHO05D008113 3.5e-10 67.8 40 92.5
ClCG09G002080 Citrullus lanatus HOM05D000001 ORTHO05D000003 1.0e-09 66.2 43 83.7
Cre10.g438600 Chlamydomonas reinhardtii HOM05D006417 ORTHO05D008113 1.3e-09 65.9 63 63.5
Nitab4.5_0002859g0060 Nicotiana tabacum HOM05D006417 ORTHO05D008113 1.1e-08 62.8 65 63.1
Nitab4.5_0004241g0020 Nicotiana tabacum HOM05D006417 ORTHO05D008113 1.1e-08 62.8 60 66.7
CAN.G710.59 Capsicum annuum HOM05D006417 ORTHO05D115303 2.4e-06 55.1 43 69.8


User provided reference genes

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