Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 4.5e-245 850.9 453 100.0
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 3.0e-204 715.3 456 86.6
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 1.3e-199 699.9 456 84.6
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 4.9e-175 618.2 457 77.0
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 4.0e-161 572.0 454 72.5
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 6.9e-161 571.2 454 73.3
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 2.2e-159 566.2 458 73.4
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 1.0e-148 530.8 417 73.6
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 1.0e-148 530.8 417 73.6
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 2.9e-135 486.1 454 63.9
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 3.2e-134 482.6 451 66.5
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 5.0e-127 458.8 439 62.0
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 1.9e-126 456.8 440 62.0
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 4.7e-125 452.2 448 62.3
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 6.1e-125 451.8 448 61.6
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 1.4e-124 450.7 460 59.1
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 1.8e-124 450.3 430 62.3
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 3.0e-124 449.5 460 59.3
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 5.7e-123 445.3 448 61.4
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 9.1e-121 438.0 446 60.5
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 3.5e-120 436.0 270 87.4
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 2.9e-119 433.0 458 59.6
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 2.9e-119 433.0 435 60.2
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 1.1e-118 431.0 459 58.2
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 4.2e-118 429.1 460 58.7
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 5.5e-118 428.7 430 60.5
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 1.6e-117 427.2 443 59.8
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 2.1e-117 426.8 458 58.1
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 3.6e-117 426.0 455 56.9
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.6e-117 426.0 444 58.8
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 6.1e-117 425.2 443 59.1
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 8.0e-117 424.9 448 58.5
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.0e-116 424.5 451 59.6
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 1.8e-116 423.7 434 59.2
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 1.8e-116 423.7 455 58.5
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 2.3e-116 423.3 458 57.2
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 4.0e-116 422.5 453 58.5
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 1.5e-115 420.6 455 57.8
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 2.0e-115 420.2 462 58.0
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 3.3e-115 419.5 443 58.9
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 5.7e-115 418.7 401 63.1
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 9.7e-115 417.9 444 58.1
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 1.3e-114 417.5 456 59.2
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 2.2e-114 416.8 438 58.9
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 3.7e-114 416.0 464 56.5
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 4.8e-114 415.6 454 58.1
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 1.1e-113 414.5 444 58.3
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 3.1e-113 412.9 444 58.3
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 5.3e-113 412.1 449 56.3
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 9.1e-113 411.4 462 57.1
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 1.2e-112 411.0 455 57.4
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 1.6e-112 410.6 449 58.6
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 2.0e-112 410.2 455 56.3
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 1.3e-111 407.5 445 56.4
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 1.7e-111 407.1 434 57.8
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 2.2e-111 406.8 441 56.9
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 2.9e-111 406.4 455 56.3
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 8.5e-111 404.8 464 55.8
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 5.5e-110 402.1 448 57.6
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 1.2e-109 401.0 476 56.1
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 1.6e-109 400.6 354 67.5
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 6.1e-109 398.7 359 67.1
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 5.2e-108 395.6 453 56.3
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 6.8e-108 395.2 477 53.5
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 1.2e-107 394.4 459 56.0
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 5.7e-107 392.1 408 60.8
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 5.7e-107 392.1 448 56.2
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 9.8e-107 391.3 450 56.9
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 2.8e-106 389.8 442 56.6
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 8.3e-106 388.3 443 55.1
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 8.3e-106 388.3 453 54.3
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 1.8e-105 387.1 431 56.8
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 2.4e-105 386.7 406 59.1
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 2.4e-105 386.7 436 56.0
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 4.1e-105 386.0 441 54.6
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 7.0e-105 385.2 264 81.4
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 2.0e-104 383.6 265 81.5
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 1.3e-103 380.9 434 56.0
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.3e-103 380.9 444 55.0
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 3.3e-102 376.3 489 52.4
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 5.5e-102 375.6 432 53.5
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 1.2e-101 374.4 281 77.2
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 2.1e-101 373.6 441 54.0
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 2.8e-101 373.2 449 53.9
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 3.6e-101 372.9 447 55.3
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 6.1e-101 372.1 436 55.0
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 8.9e-100 368.2 451 51.7
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.2e-99 367.9 449 54.6
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 2.2e-98 363.6 466 50.4
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 2.2e-98 363.6 447 54.1
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 2.4e-97 360.1 432 53.7
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 2.4e-97 360.1 449 53.7
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 2.3e-95 353.6 459 51.6
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 3.8e-95 352.8 464 52.4
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 6.6e-95 352.1 430 51.6
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 1.5e-94 350.9 441 52.2
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 3.4e-91 339.7 448 52.2
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 7.5e-91 338.6 449 50.1
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 1.3e-90 337.8 453 50.8
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 2.9e-90 336.7 444 50.9
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 2.9e-90 336.7 436 52.8
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 4.9e-90 335.9 443 51.2
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 9.2e-89 331.6 437 50.8
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.0e-88 330.5 437 50.6
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.5e-86 324.3 452 48.2
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 4.3e-86 322.8 460 49.3
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 1.6e-85 320.9 324 60.5
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 2.2e-82 310.5 424 49.1
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 6.4e-82 308.9 382 52.9
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 1.1e-81 308.1 428 48.8
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 5.4e-81 305.8 444 48.4
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 2.1e-80 303.9 452 45.4
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 1.3e-79 301.2 312 59.3
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 1.5e-78 297.7 432 50.2
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 9.5e-78 295.0 336 55.7
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 2.8e-77 293.5 467 47.8
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 9.9e-75 285.0 342 54.4
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 1.7e-71 274.2 274 59.5
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 6.6e-71 272.3 278 60.4
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 1.1e-70 271.6 333 54.7
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 4.3e-70 269.6 283 58.3
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 4.7e-69 266.2 279 60.2
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 2.0e-67 260.8 360 48.9
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 8.4e-66 255.4 267 61.4
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 5.8e-59 232.6 164 79.3
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 5.8e-59 232.6 165 81.8
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.4e-57 227.3 373 45.3
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 3.2e-57 226.9 464 38.6
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 1.7e-55 221.1 473 37.4
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 8.7e-55 218.8 270 51.5
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 2.5e-54 217.2 267 52.1
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 7.3e-54 215.7 214 64.0
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 3.9e-47 193.4 416 37.5
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 1.1e-46 191.8 218 55.5
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 6.9e-44 182.6 431 38.3
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 4.5e-43 179.9 461 36.0
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 1.6e-40 171.4 167 59.3
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 2.1e-40 171.0 168 58.9
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 5.1e-39 166.4 191 56.0
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 8.4e-34 149.1 197 50.3
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 1.6e-32 144.8 112 70.5
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 2.0e-27 127.9 500 31.0
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 4.2e-25 120.2 112 56.2
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 3.0e-23 114.0 165 49.7
C01p32800 Brassica napus HOM05D005050 ORTHO05D023932 1.1e-12 79.0 58 67.2
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 1.4e-12 78.6 230 37.4
BcaC05g25214 Brassica carinata HOM05D008776 ORTHO05D005587 4.1e-12 77.0 58 65.5
BolC8t48089H Brassica oleracea HOM05D019496 ORTHO05D019976 6.1e-08 63.2 107 43.0
C05p47770 Brassica napus HOM05D019496 ORTHO05D019976 1.0e-07 62.4 107 43.0
BolC8t52058H Brassica oleracea HOM05D005050 ORTHO05D006198 3.9e-07 60.5 35 88.6
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 4.4e-06 57.0 206 29.1
arahy.Tifrunner.gnm1.ann1.N6ZDP2 Arachis hypogaea HOM05D000449 ORTHO05D012477 4.4e-06 57.0 102 43.1
BcaC02g09385 Brassica carinata HOM05D019496 ORTHO05D019976 7.4e-06 56.2 79 46.8


User provided reference genes

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