Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G27050 Arabidopsis lyrata HOM05D005599 ORTHO05D006921 7.8e-67 256.9 123 100.0
Carub.0001s1476 Capsella rubella HOM05D005599 ORTHO05D006921 1.2e-64 249.6 123 95.9
AT1G14990 Arabidopsis thaliana HOM05D005599 ORTHO05D006921 3.6e-64 248.1 123 95.1
CARHR015530 Cardamine hirsuta HOM05D005599 ORTHO05D006921 4.7e-64 247.7 123 94.3
A09p61660 Brassica napus HOM05D005599 ORTHO05D006921 8.9e-63 243.4 121 94.2
Sp1g13380 Schrenkiella parvula HOM05D005599 ORTHO05D006921 1.5e-62 242.7 123 92.7
A06p11010 Brassica napus HOM05D005599 ORTHO05D006921 2.2e-61 238.8 123 93.5
BcaB02g06563 Brassica carinata HOM05D005599 ORTHO05D006921 3.8e-61 238.0 123 92.7
Aa31LG2G8490 Aethionema arabicum HOM05D005599 ORTHO05D006921 6.4e-61 237.3 121 90.9
BolC8t52072H Brassica oleracea HOM05D005599 ORTHO05D006921 6.4e-61 237.3 136 85.3
BraA09t41538Z Brassica rapa HOM05D005599 ORTHO05D006921 7.1e-60 233.8 139 82.7
BolC5t30050H Brassica oleracea HOM05D005599 ORTHO05D006921 2.1e-59 232.3 123 91.9
THA.LOC104823847 Tarenaya hassleriana HOM05D005599 ORTHO05D006921 1.1e-57 226.5 123 87.0
AUR62032768 Chenopodium quinoa HOM05D005599 ORTHO05D006921 1.2e-56 223.0 123 83.7
Hund09673 Selenicereus undatus HOM05D005599 ORTHO05D006921 4.7e-56 221.1 123 82.9
Gohir.A03G120800 Gossypium hirsutum HOM05D005599 ORTHO05D006921 3.1e-55 218.4 121 83.5
Sc14g0007100 Simmondsia chinensis HOM05D005599 ORTHO05D006921 5.2e-55 217.6 123 82.9
MD13G1024900 Malus domestica HOM05D005599 ORTHO05D006921 6.9e-55 217.2 123 80.5
C05p13060 Brassica napus HOM05D005599 ORTHO05D006921 1.2e-54 216.5 131 83.2
COL.COLO4_20491 Corchorus olitorius HOM05D005599 ORTHO05D006921 1.2e-54 216.5 120 83.3
Gohir.D02G144100 Gossypium hirsutum HOM05D005599 ORTHO05D006921 1.5e-54 216.1 121 82.6
Thhalv10009435m.g Eutrema salsugineum HOM05D005599 ORTHO05D006921 2.0e-54 215.7 106 95.3
MD16G1027400 Malus domestica HOM05D005599 ORTHO05D006921 2.0e-54 215.7 123 79.7
Ciclev10017195m.g Citrus clementina HOM05D005599 ORTHO05D006921 2.6e-54 215.3 123 78.0
Duzib251G0393 Durio zibethinus HOM05D005599 ORTHO05D006921 4.4e-54 214.5 121 81.8
Prupe.1G325600 Prunus persica HOM05D005599 ORTHO05D006921 4.4e-54 214.5 123 79.7
Sed0017153 Sechium edule HOM05D005599 ORTHO05D006921 4.4e-54 214.5 119 83.2
Ah.04g163140 Amaranthus hybridus HOM05D005599 ORTHO05D006921 9.9e-54 213.4 123 80.5
EL10Ac9g21851 Beta vulgaris HOM05D005599 ORTHO05D006921 1.3e-53 213.0 123 78.9
Manes.15G128100 Manihot esculenta HOM05D005599 ORTHO05D006921 1.7e-53 212.6 123 79.7
Thecc.02G282300 Theobroma cacao HOM05D005599 ORTHO05D006921 1.7e-53 212.6 115 84.3
CiPaw.06G011400 Carya illinoinensis HOM05D005599 ORTHO05D006921 2.9e-53 211.8 123 79.7
PGR004G1422 Punica granatum HOM05D005599 ORTHO05D006921 2.9e-53 211.8 123 78.9
Atru.chr11.497 Acer truncatum HOM05D005599 ORTHO05D006921 8.4e-53 210.3 115 80.9
QL01p001565 Quercus lobata HOM05D005599 ORTHO05D006921 8.4e-53 210.3 122 78.7
Glyma.16G057902 Glycine max HOM05D005599 ORTHO05D006921 1.1e-52 209.9 123 76.4
Os01g0606050 Oryza sativa ssp. japonica HOM05D005599 ORTHO05D006921 1.4e-52 209.5 123 79.7
C08p45240 Brassica napus HOM05D005599 ORTHO05D006921 1.9e-52 209.1 104 93.3
ClCG07G006660 Citrullus lanatus HOM05D005599 ORTHO05D006921 1.9e-52 209.1 115 83.5
FAN05G3069 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.9e-52 209.1 115 81.7
FAN12G4015 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.9e-52 209.1 115 81.7
FAN25G3147 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.9e-52 209.1 115 81.7
Rhsim09G0066400 Rhododendron simsii HOM05D005599 ORTHO05D006921 1.9e-52 209.1 123 77.2
RcHm_v2.0_Chr4g0425701 Rosa chinensis HOM05D005599 ORTHO05D006921 1.9e-52 209.1 115 81.7
Dinv14427 Davidia involucrata HOM05D005599 ORTHO05D006921 2.4e-52 208.8 123 77.2
Glyma.19G089600 Glycine max HOM05D005599 ORTHO05D006921 2.4e-52 208.8 121 76.9
Peaxi162Scf00253g01125 Petunia axillaris HOM05D005599 ORTHO05D006921 2.4e-52 208.8 123 78.9
CsaV3_5G013870 Cucumis sativus L. HOM05D005599 ORTHO05D006921 4.2e-52 208.0 115 82.6
Nitab4.5_0000426g0280 Nicotiana tabacum HOM05D005599 ORTHO05D006921 5.4e-52 207.6 115 81.7
Nitab4.5_0004230g0050 Nicotiana tabacum HOM05D005599 ORTHO05D006921 5.4e-52 207.6 115 81.7
TWI79G1349 Tripterygium wilfordii HOM05D005599 ORTHO05D006921 5.4e-52 207.6 123 78.9
GSVIVG01011752001 Vitis vinifera HOM05D005599 ORTHO05D006921 7.1e-52 207.2 123 76.4
FAN07G1516 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.2e-51 206.5 115 80.9
BraA06t24281Z Brassica rapa HOM05D005599 ORTHO05D006921 1.6e-51 206.1 106 92.5
Potri.008G129900 Populus trichocarpa HOM05D005599 ORTHO05D006921 2.1e-51 205.7 123 76.4
Zm00001eb161570 Zea mays HOM05D005599 ORTHO05D006921 2.7e-51 205.3 123 76.4
CAN.G1244.3 Capsicum annuum HOM05D005599 ORTHO05D006921 4.6e-51 204.5 115 80.9
MELO3C018308.2 Cucumis melo HOM05D005599 ORTHO05D006921 4.6e-51 204.5 115 81.7
Phvul.001G094900 Phaseolus vulgaris HOM05D005599 ORTHO05D006921 6.0e-51 204.1 123 75.6
ATR0796G095 Amborella trichopoda HOM05D005599 ORTHO05D006921 7.8e-51 203.8 114 81.6
Potri.010G112300 Populus trichocarpa HOM05D005599 ORTHO05D006921 7.8e-51 203.8 115 80.0
Cfa008617 Carpinus fangiana HOM05D005599 ORTHO05D006921 1.3e-50 203.0 115 79.1
Cc11_g08600 Coffea canephora HOM05D005599 ORTHO05D006921 1.3e-50 203.0 115 78.3
Hma1.2p1_0096F.1_g047800 Hydrangea macrophylla HOM05D005599 ORTHO05D006921 1.3e-50 203.0 123 74.8
TPR.G19139 Trifolium pratense HOM05D005599 ORTHO05D006921 1.3e-50 203.0 123 76.4
vmacro14440 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 1.3e-50 203.0 123 75.6
FvH4_4g19980 Fragaria vesca HOM05D005599 ORTHO05D006921 1.7e-50 202.6 115 80.9
Lalb_Chr08g0237401 Lupinus albus HOM05D005599 ORTHO05D006921 1.7e-50 202.6 123 75.6
Ca_21512_v3 Cicer arietinum L. HOM05D005599 ORTHO05D006921 2.3e-50 202.2 123 75.6
Medtr1g069405 Medicago truncatula HOM05D005599 ORTHO05D006921 3.0e-50 201.8 123 75.6
Aqoxy3G01068 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 5.1e-50 201.1 113 80.5
MBI16_g23758_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 5.1e-50 201.1 122 77.0
Psat6g049960 Pisum sativum HOM05D005599 ORTHO05D006921 5.1e-50 201.1 123 76.4
TAR622G1178 Trochodendron aralioides HOM05D005599 ORTHO05D006921 5.1e-50 201.1 123 74.8
Lj6g0000510 Lotus japonicus HOM05D005599 ORTHO05D006921 1.5e-49 199.5 123 74.0
PGSC0003DMG400005984 Solanum tuberosum HOM05D005599 ORTHO05D006921 1.5e-49 199.5 115 79.1
Eucgr.B01298 Eucalyptus grandis HOM05D005599 ORTHO05D006921 1.9e-49 199.1 123 74.0
VMungo0464G0261 Vigna mungo HOM05D005599 ORTHO05D006921 1.9e-49 199.1 123 74.0
BcaC07g38244 Brassica carinata HOM05D005599 ORTHO05D006921 2.5e-49 198.7 106 89.6
C08p09930 Brassica napus HOM05D005599 ORTHO05D006921 2.5e-49 198.7 106 89.6
BolC8t48670H Brassica oleracea HOM05D005599 ORTHO05D006921 2.5e-49 198.7 106 89.6
MSTRG.6631 Avicennia marina HOM05D005599 ORTHO05D006921 3.3e-49 198.4 121 75.2
DCAR_023596 Daucus carota HOM05D005599 ORTHO05D006921 5.6e-49 197.6 123 71.5
PSO170G3715 Papaver somniferum HOM05D005599 ORTHO05D006921 5.6e-49 197.6 113 79.6
DCAR_026778 Daucus carota HOM05D005599 ORTHO05D006921 1.3e-48 196.4 123 71.5
Solyc04g007700.3 Solanum lycopersicum HOM05D005599 ORTHO05D006921 1.6e-48 196.1 115 77.4
CANSAT11G1373 Cannabis sativa HOM05D005599 ORTHO05D006921 2.1e-48 195.7 123 74.0
RcHm_v2.0_Chr4g0441361 Rosa chinensis HOM05D005599 ORTHO05D006921 2.1e-48 195.7 123 74.0
CDE07G0704 Ceratophyllum demersum HOM05D005599 ORTHO05D006921 4.8e-48 194.5 122 73.0
AUR62042684 Chenopodium quinoa HOM05D005599 ORTHO05D006921 6.2e-48 194.1 109 79.8
SGA_v2.0_scaffold181G39695 Striga asiatica HOM05D005599 ORTHO05D006921 6.2e-48 194.1 119 73.9
Sopen04g002790 Solanum pennellii HOM05D005599 ORTHO05D006921 8.1e-48 193.7 115 76.5
SGA_v2.0_scaffold154G37132 Striga asiatica HOM05D005599 ORTHO05D006921 1.4e-47 193.0 119 73.1
HPP92_003868 Vanilla planifolia HOM05D005599 ORTHO05D006921 1.2e-46 189.9 122 73.0
HPP92_003899 Vanilla planifolia HOM05D005599 ORTHO05D006921 1.2e-46 189.9 122 73.0
Dinv07654 Davidia involucrata HOM05D005599 ORTHO05D006921 2.0e-46 189.1 104 81.7
Gorai.005G161400 Gossypium raimondii HOM05D005599 ORTHO05D006921 7.6e-46 187.2 104 81.7
unitig_899.g15269 Utricularia gibba HOM05D005599 ORTHO05D006921 1.3e-45 186.4 113 76.1
Cpa.g.sc65.146 Carica papaya HOM05D005599 ORTHO05D006921 8.4e-45 183.7 98 83.7
HanXRQChr08g0212121 Helianthus annuus HOM05D005599 ORTHO05D006921 8.4e-45 183.7 115 73.0
Lsat_1_v5_gn_9_79661 Lactuca sativa HOM05D005599 ORTHO05D006921 1.1e-44 183.3 115 71.3
ECA236G1659 Erigeron canadensis HOM05D005599 ORTHO05D006921 2.4e-44 182.2 115 73.0
CSS0007655 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 5.4e-44 181.0 106 76.4
CSS0037826 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 5.4e-44 181.0 106 76.4
CSS0001207 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 1.6e-43 179.5 106 75.5
HanXRQChr12g0364441 Helianthus annuus HOM05D005599 ORTHO05D006921 2.7e-43 178.7 115 70.4
Haze_10995 Corylus avellana HOM05D005599 ORTHO05D006921 3.5e-43 178.3 113 73.5
Oeu045860.1 Olea europaea HOM05D005599 ORTHO05D006921 6.0e-43 177.6 98 80.6
arahy.Tifrunner.gnm1.ann1.5G098T Arachis hypogaea HOM05D005599 ORTHO05D006921 7.9e-43 177.2 106 73.6
arahy.Tifrunner.gnm1.ann1.UU8CC3 Arachis hypogaea HOM05D005599 ORTHO05D006921 1.0e-42 176.8 106 73.6
Sed0011013 Sechium edule HOM05D005599 ORTHO05D006921 1.3e-42 176.4 98 82.7
arahy.Tifrunner.gnm1.ann1.5FG4B2 Arachis hypogaea HOM05D005599 ORTHO05D006921 1.8e-42 176.0 102 75.5
Sabra08G0098500 Salix brachista HOM05D005599 ORTHO05D006921 3.9e-42 174.9 106 74.5
vmacro00414 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 3.9e-42 174.9 106 74.5
Oeu003383.1 Olea europaea HOM05D005599 ORTHO05D006921 6.7e-42 174.1 98 80.6
SEGI_33740 Sequoiadendron giganteum HOM05D005599 ORTHO05D006921 8.7e-42 173.7 112 69.6
SGA_v2.0_scaffold6G03128 Striga asiatica HOM05D005599 ORTHO05D006921 1.9e-41 172.6 120 66.7
AUR62014127 Chenopodium quinoa HOM05D005599 ORTHO05D006921 4.3e-41 171.4 86 89.5
Sabra10G0082600 Salix brachista HOM05D005599 ORTHO05D006921 5.6e-41 171.0 113 68.1
Aqoxy1G03319 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 7.4e-41 170.6 97 78.4
PSO782G0484 Papaver somniferum HOM05D005599 ORTHO05D006921 1.1e-39 166.8 98 76.5
Migut.M00054 Erythranthe guttata HOM05D005599 ORTHO05D006921 5.3e-39 164.5 114 70.2
BcaC05g25431 Brassica carinata HOM05D005599 ORTHO05D006921 8.4e-37 157.1 123 68.3
Pp3c16_10100 Physcomitrium patens HOM05D005599 ORTHO05D006921 8.7e-34 147.1 113 55.8
Eucgr.E01608 Eucalyptus grandis HOM05D005599 ORTHO05D006921 5.8e-30 134.4 107 60.7
arahy.Tifrunner.gnm1.ann1.XM49AS Arachis hypogaea HOM05D005599 ORTHO05D006921 1.3e-29 133.3 75 78.7
Mapoly0035s0140 Marchantia polymorpha HOM05D005599 ORTHO05D006921 4.9e-29 131.3 109 55.0
Eucgr.B02904 Eucalyptus grandis HOM05D005599 ORTHO05D006921 3.0e-26 122.1 95 58.9
SGA_v2.0_scaffold2G00929 Striga asiatica HOM05D005599 ORTHO05D006921 6.3e-24 114.4 65 78.5
Nn4g24251 Nelumbo nucifera HOM05D005599 ORTHO05D006921 1.0e-18 97.1 57 78.9
MBI16_g23757_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 1.5e-17 93.2 68 66.2
MBI16_g23756_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D016475 1.3e-16 90.1 69 63.8
CBR_g40805 Chara braunii HOM05D005599 ORTHO05D006921 3.4e-14 82.0 65 55.4
DCAR_032107 Daucus carota HOM05D005599 ORTHO05D006921 3.8e-13 78.6 50 60.0
SGA_v2.0_scaffold135G34854 Striga asiatica HOM05D005599 ORTHO05D006921 1.2e-11 73.6 44 63.6
QL08p008929 Quercus lobata HOM05D005599 ORTHO05D006921 9.7e-09 63.9 41 65.9


User provided reference genes

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