Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 9.9e-129 463.8 290 100.0
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 3.3e-116 422.2 291 87.3
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 6.5e-104 381.3 291 84.9
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 7.2e-95 351.3 289 74.7
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 3.7e-91 339.0 295 70.5
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.7e-83 313.5 291 60.5
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 2.4e-82 309.7 307 64.5
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 9.1e-82 307.8 304 66.8
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 2.6e-81 306.2 301 65.8
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 5.9e-81 305.1 305 66.9
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 2.2e-80 303.1 302 61.9
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 5.5e-79 298.5 300 68.0
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.4e-77 293.9 291 59.1
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 2.3e-77 293.1 302 61.6
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 5.2e-77 292.0 310 59.4
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 1.2e-76 290.8 306 67.0
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 4.4e-76 288.9 282 63.5
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 3.7e-75 285.8 290 59.3
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 4.8e-75 285.4 303 66.7
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 6.3e-75 285.0 280 64.3
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 7.0e-74 281.6 280 65.4
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 1.2e-73 280.8 302 66.2
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 2.0e-73 280.0 337 55.2
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 1.9e-71 273.5 334 60.5
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 5.5e-71 271.9 291 61.9
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 2.4e-58 229.9 306 45.8
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 9.2e-58 228.0 310 50.6
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 1.2e-57 227.6 293 51.2
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 8.6e-56 221.5 310 44.2
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 8.6e-56 221.5 310 50.6
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 1.5e-55 220.7 307 49.8
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 5.6e-55 218.8 288 50.0
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 5.6e-55 218.8 288 50.0
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 1.2e-54 217.6 310 49.7
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 3.6e-54 216.1 310 43.9
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 3.6e-54 216.1 305 42.6
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 6.1e-54 215.3 310 43.2
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.4e-53 214.2 310 42.6
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.3e-53 213.4 297 53.9
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 5.2e-53 212.2 310 48.7
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 6.8e-53 211.8 310 49.4
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 8.9e-53 211.5 306 43.8
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.2e-52 211.1 310 41.9
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.2e-52 211.1 307 43.6
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.5e-52 210.7 310 48.7
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 2.6e-52 209.9 307 43.6
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.6e-52 209.9 310 41.6
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 3.4e-52 209.5 304 46.7
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 3.4e-52 209.5 309 42.1
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 5.7e-52 208.8 306 49.3
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 1.3e-51 207.6 310 48.1
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 1.7e-51 207.2 308 47.7
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 1.7e-51 207.2 307 49.5
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 2.9e-51 206.5 308 42.9
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 4.9e-51 205.7 302 43.0
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 4.9e-51 205.7 311 41.5
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 6.4e-51 205.3 308 41.6
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 1.1e-50 204.5 310 42.6
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 1.4e-50 204.1 310 52.6
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 1.8e-50 203.8 303 46.5
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 9.2e-50 201.4 303 46.2
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 1.6e-49 200.7 229 59.4
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 1.6e-49 200.7 312 48.1
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 5.9e-49 198.7 312 45.8
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 1.0e-48 198.0 309 40.5
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 1.0e-48 198.0 306 45.1
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.3e-48 197.6 312 47.4
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 1.3e-48 197.6 305 47.9
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 1.3e-48 197.6 304 40.8
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 1.7e-48 197.2 293 41.6
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 2.3e-48 196.8 304 47.4
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 5.0e-48 195.7 309 45.3
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 5.0e-48 195.7 304 40.1
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 5.0e-48 195.7 308 43.2
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 5.0e-48 195.7 308 43.2
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 8.6e-48 194.9 304 48.0
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 8.6e-48 194.9 305 51.1
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.5e-47 194.1 304 41.1
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 1.5e-47 194.1 302 41.7
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.5e-47 193.4 306 42.8
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 2.5e-47 193.4 310 47.4
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 4.3e-47 192.6 303 40.6
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 7.3e-47 191.8 316 47.8
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.6e-46 190.7 271 48.3
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 1.6e-46 190.7 304 40.1
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 2.1e-46 190.3 314 45.2
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.1e-46 190.3 271 48.3
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 2.8e-46 189.9 291 41.6
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 2.8e-46 189.9 315 44.1
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 3.6e-46 189.5 304 46.4
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 3.6e-46 189.5 310 45.5
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 1.0e-45 188.0 356 37.1
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 4.0e-45 186.0 294 41.5
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 5.2e-45 185.7 312 38.5
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 6.8e-45 185.3 311 38.3
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 1.5e-44 184.1 314 43.0
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 5.8e-44 182.2 262 40.5
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 7.5e-44 181.8 307 38.4
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.2e-43 180.3 308 41.6
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 8.3e-43 178.3 302 38.7
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 1.1e-42 177.9 314 47.5
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 1.4e-42 177.6 307 44.6
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 2.7e-41 173.3 306 41.2
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 4.6e-41 172.6 307 46.9
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 7.8e-41 171.8 313 39.9
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 1.0e-40 171.4 312 36.5
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 1.3e-40 171.0 365 33.4
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 1.3e-40 171.0 276 42.0
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.3e-40 170.2 307 45.9
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 2.3e-40 170.2 365 35.9
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 5.0e-40 169.1 304 42.4
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 1.1e-39 167.9 303 38.0
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 3.3e-39 166.4 260 40.8
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 5.6e-39 165.6 310 35.2
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 2.1e-38 163.7 321 37.4
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 8.1e-38 161.8 307 43.0
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 8.1e-38 161.8 303 42.6
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 1.1e-37 161.4 305 45.2
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 4.0e-37 159.5 376 32.4
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 8.9e-37 158.3 272 39.3
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 1.2e-36 157.9 267 43.1
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 1.2e-36 157.9 296 35.8
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 3.4e-36 156.4 329 37.1
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 9.8e-36 154.8 352 34.1
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 3.5e-33 146.4 304 42.8
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 3.9e-32 142.9 266 36.1
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 6.6e-32 142.1 271 36.9
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 6.6e-32 142.1 296 35.5
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 8.6e-32 141.7 252 38.1
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 3.3e-31 139.8 323 34.7
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 1.2e-30 137.9 244 37.7
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 4.4e-28 129.4 201 36.3
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 5.8e-28 129.0 122 55.7
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 9.9e-28 128.3 182 42.9
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 3.8e-27 126.3 120 52.5
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 8.4e-27 125.2 240 46.7
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 5.4e-26 122.5 116 62.1
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 5.4e-26 122.5 116 62.1
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 2.1e-25 120.6 219 39.7
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 2.3e-24 117.1 244 45.9
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 9.6e-23 111.7 124 49.2
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.6e-22 109.8 122 52.5
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.6e-22 109.8 122 52.5
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 4.7e-22 109.4 301 31.6
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.1e-21 108.2 122 47.5
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 1.4e-21 107.8 142 45.1
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 6.9e-21 105.5 164 42.1
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 6.9e-21 105.5 164 42.1
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 3.4e-20 103.2 241 35.3
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 7.6e-20 102.1 97 63.9
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 9.9e-20 101.7 109 50.5
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 1.7e-19 100.9 308 30.2
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 1.7e-19 100.9 121 47.1
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.2e-19 100.5 324 27.5
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 2.9e-19 100.1 122 45.1
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 4.2e-18 96.3 241 44.4
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.0e-16 91.7 365 27.7
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 1.0e-16 91.7 291 28.5
BraA09t41558Z Brassica rapa HOM05D065654 ORTHO05D032288 4.8e-14 82.8 223 35.0
A09p61960 Brassica napus HOM05D065654 ORTHO05D032288 6.2e-14 82.4 244 34.0
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 6.9e-13 79.0 86 47.7
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.5e-12 77.8 159 33.3
BcaB02g06539 Brassica carinata HOM05D003707 ORTHO05D004309 5.8e-12 75.9 68 67.6
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.3e-11 74.7 117 37.6
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 4.9e-11 72.8 194 30.9
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 1.4e-10 71.2 101 45.5
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 3.2e-10 70.1 90 40.0
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 6.0e-09 65.9 59 52.5
Mapoly0003s0015 Marchantia polymorpha HOM05D019185 ORTHO05D030113 1.3e-08 64.7 86 45.3
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 1.3e-08 64.7 112 41.1
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 2.3e-08 63.9 252 25.8
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 3.0e-08 63.5 105 36.2
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 3.9e-08 63.2 42 73.8
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 6.7e-08 62.4 112 39.3
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 5.6e-07 59.3 190 30.5
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 4.8e-06 56.2 49 57.1


User provided reference genes

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