Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G26230 Arabidopsis lyrata HOM05D007070 ORTHO05D008892 2.2e-103 379.0 197 100.0
AT1G14345 Arabidopsis thaliana HOM05D007070 ORTHO05D008892 8.0e-98 360.5 197 95.4
Carub.0001s1403 Capsella rubella HOM05D007070 ORTHO05D008892 6.4e-95 350.9 197 92.4
CARHR014780 Cardamine hirsuta HOM05D007070 ORTHO05D008892 7.8e-93 344.0 198 92.4
Thhalv10008846m.g Eutrema salsugineum HOM05D007070 ORTHO05D008892 8.0e-90 334.0 194 91.2
Sp1g12710 Schrenkiella parvula HOM05D007070 ORTHO05D008892 7.5e-88 327.4 194 89.2
BcaB02g06484 Brassica carinata HOM05D007070 ORTHO05D008892 8.6e-84 313.9 196 86.2
C05p12140 Brassica napus HOM05D007070 ORTHO05D008892 1.1e-81 307.0 196 83.2
BolC5t29966H Brassica oleracea HOM05D007070 ORTHO05D008892 5.8e-80 301.2 197 82.7
A06p10330 Brassica napus HOM05D007070 ORTHO05D008892 9.9e-80 300.4 196 83.2
BraA06t24215Z Brassica rapa HOM05D007070 ORTHO05D008892 9.9e-80 300.4 196 83.2
BcaC05g25332 Brassica carinata HOM05D007070 ORTHO05D008892 3.0e-68 262.3 199 75.4
MD13G1074900 Malus domestica HOM05D007070 ORTHO05D008892 4.8e-66 255.0 171 76.6
Duzib251G0126 Durio zibethinus HOM05D007070 ORTHO05D008892 6.2e-66 254.6 206 69.4
TWI75G1629 Tripterygium wilfordii HOM05D007070 ORTHO05D008892 5.3e-65 251.5 189 69.3
Ciclev10032797m.g Citrus clementina HOM05D007070 ORTHO05D008892 2.6e-64 249.2 199 67.3
CsaV3_5G032500 Cucumis sativus L. HOM05D007070 ORTHO05D008892 4.4e-64 248.4 171 72.5
Thecc.02G352500 Theobroma cacao HOM05D007070 ORTHO05D008892 4.4e-64 248.4 207 65.2
Gorai.013G083500 Gossypium raimondii HOM05D007070 ORTHO05D008892 7.6e-64 247.7 205 66.8
Aa31LG1G700 Aethionema arabicum HOM05D007070 ORTHO05D008892 9.9e-64 247.3 176 73.3
Cpa.g.sc183.28 Carica papaya HOM05D007070 ORTHO05D008892 9.9e-64 247.3 193 67.9
Sed0007814 Sechium edule HOM05D007070 ORTHO05D008892 9.9e-64 247.3 196 64.8
COL.COLO4_22972 Corchorus olitorius HOM05D007070 ORTHO05D008892 1.3e-63 246.9 208 65.9
RcHm_v2.0_Chr4g0440151 Rosa chinensis HOM05D007070 ORTHO05D008892 1.3e-63 246.9 175 73.7
MELO3C012078.2 Cucumis melo HOM05D007070 ORTHO05D008892 1.7e-63 246.5 198 66.7
Lj3P1040T26 Lonicera japonica HOM05D007070 ORTHO05D008892 2.9e-63 245.7 197 67.0
CSS0037166 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 3.8e-63 245.4 192 70.3
CSS0050316 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 3.8e-63 245.4 192 70.3
Atru.chr11.1834 Acer truncatum HOM05D007070 ORTHO05D008892 4.9e-63 245.0 193 66.8
arahy.Tifrunner.gnm1.ann1.H49BTR Arachis hypogaea HOM05D007070 ORTHO05D008892 6.4e-63 244.6 197 68.0
Haze_12036 Corylus avellana HOM05D007070 ORTHO05D008892 6.4e-63 244.6 199 66.8
Gohir.A13G072600 Gossypium hirsutum HOM05D007070 ORTHO05D008892 6.4e-63 244.6 205 66.8
Gohir.D13G072700 Gossypium hirsutum HOM05D007070 ORTHO05D008892 6.4e-63 244.6 205 66.3
Ah.02g131260 Amaranthus hybridus HOM05D007070 ORTHO05D008892 8.4e-63 244.2 166 73.5
Dinv34174 Davidia involucrata HOM05D007070 ORTHO05D008892 1.1e-62 243.8 155 76.8
PGR119G1526 Punica granatum HOM05D007070 ORTHO05D008892 2.4e-62 242.7 168 74.4
FAN07G2888 Fragaria x ananassa HOM05D007070 ORTHO05D008892 4.2e-62 241.9 143 83.9
Manes.05G098800 Manihot esculenta HOM05D007070 ORTHO05D008892 5.4e-62 241.5 188 68.6
Migut.L01320 Erythranthe guttata HOM05D007070 ORTHO05D008892 7.1e-62 241.1 165 73.3
FAN17G0782 Fragaria x ananassa HOM05D007070 ORTHO05D008892 7.1e-62 241.1 164 75.6
Potri.010G093300 Populus trichocarpa HOM05D007070 ORTHO05D008892 9.3e-62 240.7 202 65.3
arahy.Tifrunner.gnm1.ann1.P1GF9J Arachis hypogaea HOM05D007070 ORTHO05D008892 1.2e-61 240.4 197 66.0
FAN22G1781 Fragaria x ananassa HOM05D007070 ORTHO05D008892 1.6e-61 240.0 136 85.3
Prupe.1G271300 Prunus persica HOM05D007070 ORTHO05D008892 2.7e-61 239.2 180 70.0
SGA_v2.0_scaffold302G47841 Striga asiatica HOM05D007070 ORTHO05D008892 3.5e-61 238.8 194 66.0
Cc11_g13320 Coffea canephora HOM05D007070 ORTHO05D008892 4.6e-61 238.4 194 67.0
QL03p064901 Quercus lobata HOM05D007070 ORTHO05D008892 4.6e-61 238.4 161 75.2
FvH4_4g31650 Fragaria vesca HOM05D007070 ORTHO05D008892 7.8e-61 237.7 140 82.9
FAN12G3127 Fragaria x ananassa HOM05D007070 ORTHO05D008892 1.0e-60 237.3 128 89.1
TAR622G0001 Trochodendron aralioides HOM05D007070 ORTHO05D008892 3.0e-60 235.7 199 64.8
Duzib268G0688 Durio zibethinus HOM05D007070 ORTHO05D008892 3.9e-60 235.3 179 67.6
Sabra10G0065800 Salix brachista HOM05D007070 ORTHO05D008892 6.6e-60 234.6 201 63.7
Actinidia31196 Actinidia chinensis HOM05D007070 ORTHO05D008892 8.7e-60 234.2 175 71.4
AUR62005745 Chenopodium quinoa HOM05D007070 ORTHO05D008892 1.1e-59 233.8 197 63.5
MSTRG.13406 Avicennia marina HOM05D007070 ORTHO05D008892 2.5e-59 232.6 197 62.4
Lalb_Chr10g0098121 Lupinus albus HOM05D007070 ORTHO05D008892 2.5e-59 232.6 193 64.8
Rhsim12G0131600 Rhododendron simsii HOM05D007070 ORTHO05D008892 2.5e-59 232.6 174 67.8
ClCG05G024460 Citrullus lanatus HOM05D007070 ORTHO05D008892 3.3e-59 232.3 171 69.0
Glyma.02G019200 Glycine max HOM05D007070 ORTHO05D008892 3.3e-59 232.3 190 65.3
Hma1.2p1_0598F.1_g186810 Hydrangea macrophylla HOM05D007070 ORTHO05D008892 4.3e-59 231.9 192 64.6
DCAR_007140 Daucus carota HOM05D007070 ORTHO05D008892 5.6e-59 231.5 203 64.5
Nitab4.5_0012600g0010 Nicotiana tabacum HOM05D007070 ORTHO05D008892 5.6e-59 231.5 191 67.0
Nitab4.5_0000141g0310 Nicotiana tabacum HOM05D007070 ORTHO05D008892 9.6e-59 230.7 194 65.5
SalBow2G0737 Salvia bowleyana HOM05D007070 ORTHO05D008892 9.6e-59 230.7 168 67.9
SalBow2G1571 Salvia bowleyana HOM05D007070 ORTHO05D008892 9.6e-59 230.7 168 67.9
TAR374G1105 Trochodendron aralioides HOM05D007070 ORTHO05D008892 1.6e-58 229.9 199 63.3
RhsimUnG0241900 Rhododendron simsii HOM05D007070 ORTHO05D008892 2.1e-58 229.6 165 69.1
Eucgr.G02521 Eucalyptus grandis HOM05D007070 ORTHO05D008892 2.8e-58 229.2 127 85.8
Sc04g0008310 Simmondsia chinensis HOM05D007070 ORTHO05D008892 2.8e-58 229.2 192 65.6
THA.LOC104805942 Tarenaya hassleriana HOM05D007070 ORTHO05D008892 2.8e-58 229.2 121 91.7
CiPaw.05G138000 Carya illinoinensis HOM05D007070 ORTHO05D008892 3.6e-58 228.8 203 64.0
CAN.G375.28 Capsicum annuum HOM05D007070 ORTHO05D008892 4.8e-58 228.4 159 76.1
VMungo1215G0639 Vigna mungo HOM05D007070 ORTHO05D008892 4.8e-58 228.4 166 71.1
CDE05G3062 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 6.2e-58 228.0 150 76.0
Glyma.01G044500 Glycine max HOM05D007070 ORTHO05D008892 1.8e-57 226.5 194 62.9
PSO591G0158 Papaver somniferum HOM05D007070 ORTHO05D008892 4.0e-57 225.3 196 64.3
CANSAT56G2723 Cannabis sativa HOM05D007070 ORTHO05D008892 5.3e-57 224.9 157 72.6
PSO832G2327 Papaver somniferum HOM05D007070 ORTHO05D008892 5.3e-57 224.9 196 64.3
Medtr5g038970 Medicago truncatula HOM05D007070 ORTHO05D008892 6.9e-57 224.6 196 62.8
Lj2g0006172 Lotus japonicus HOM05D007070 ORTHO05D008892 9.0e-57 224.2 128 84.4
Phvul.002G088700 Phaseolus vulgaris HOM05D007070 ORTHO05D008892 9.0e-57 224.2 200 63.0
Aqoxy3G03327 Aquilegia oxysepala HOM05D007070 ORTHO05D008892 3.4e-56 222.2 200 63.0
Psat2g122360 Pisum sativum HOM05D007070 ORTHO05D008892 3.4e-56 222.2 129 84.5
Sopen01g006270 Solanum pennellii HOM05D007070 ORTHO05D008892 3.4e-56 222.2 167 71.9
Lsat_1_v5_gn_8_52140 Lactuca sativa HOM05D007070 ORTHO05D008892 1.3e-55 220.3 191 63.4
Solyc01g010640.3 Solanum lycopersicum HOM05D007070 ORTHO05D008892 1.3e-55 220.3 197 64.0
PGSC0003DMG400000874 Solanum tuberosum HOM05D007070 ORTHO05D008892 2.2e-55 219.5 197 64.0
Ca_04760_v3 Cicer arietinum L. HOM05D007070 ORTHO05D008892 3.8e-55 218.8 198 61.6
ECA236G0127 Erigeron canadensis HOM05D007070 ORTHO05D008892 3.8e-55 218.8 178 64.0
MBI05_g00391_MAGBIO Magnolia biondii HOM05D007070 ORTHO05D008892 1.4e-54 216.9 204 61.3
HanXRQChr08g0209191 Helianthus annuus HOM05D007070 ORTHO05D008892 1.9e-54 216.5 188 63.3
Peaxi162Scf00026g00288 Petunia axillaris HOM05D007070 ORTHO05D008892 2.1e-53 213.0 192 63.5
TPR.G36542 Trifolium pratense HOM05D007070 ORTHO05D008892 1.8e-52 209.9 116 83.6
ATR0564G356 Amborella trichopoda HOM05D007070 ORTHO05D008892 2.3e-52 209.5 203 58.6
CDE05G3277 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 1.6e-50 203.4 136 72.8
MSTRG.684 Avicennia marina HOM05D007070 ORTHO05D008892 9.0e-49 197.6 120 80.8
HPP92_018585 Vanilla planifolia HOM05D007070 ORTHO05D008892 1.3e-47 193.7 179 55.3
HPP92_018595 Vanilla planifolia HOM05D007070 ORTHO05D008892 6.5e-47 191.4 152 59.2
Zm00001eb402240 Zea mays HOM05D007070 ORTHO05D008892 2.5e-46 189.5 113 77.9
Os03g0170500 Oryza sativa ssp. japonica HOM05D007070 ORTHO05D008892 4.2e-46 188.7 113 79.6
AagrBONN_evm.TU.Sc2ySwM_362.2904 Anthoceros agrestis HOM05D007070 ORTHO05D008892 7.9e-45 184.5 197 50.3
Mapoly0002s0258 Marchantia polymorpha HOM05D007070 ORTHO05D008892 1.3e-44 183.7 142 66.2
unitig_699.g19919 Utricularia gibba HOM05D007070 ORTHO05D008892 1.3e-44 183.7 139 69.1
SEGI_28311 Sequoiadendron giganteum HOM05D007070 ORTHO05D008892 5.1e-44 181.8 111 76.6
SMO329G0045 Selaginella moellendorffii HOM05D007070 ORTHO05D008892 2.5e-43 179.5 126 66.7
AUR62028813 Chenopodium quinoa HOM05D007070 ORTHO05D008892 1.6e-37 160.2 195 50.8
CBR_g47945 Chara braunii HOM05D007070 ORTHO05D008892 2.7e-37 159.5 126 55.6
Sc04g0008340 Simmondsia chinensis HOM05D007070 ORTHO05D008892 1.3e-36 157.1 192 50.0
Cre08.g358540 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 5.0e-23 112.1 127 39.4
MCO16G462 Micromonas commoda HOM05D007070 ORTHO05D008892 1.1e-19 100.9 131 41.2
PRCOL_00004582 Prasinoderma coloniale HOM05D007070 ORTHO05D008892 4.1e-17 92.4 106 45.3
Atru.chr2.2148 Acer truncatum HOM05D007070 ORTHO05D008892 9.1e-17 91.3 54 75.9
Cre07.g321300 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 2.5e-14 83.2 128 28.9


User provided reference genes

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